Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005404

Physical Location & Seq

Genomic Coordinates Forward (+)

9348163 .. 9356768

Gene Structure 8606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G054800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGGCCACCGACCCAAACATGAGTAGCTGGACCGATCTGCTCCACTCCTCCACCAAGCTTCTCGAACAAGCCGCTCCTTCCGCGCAGTTCCCTCCTCTACAGAGAAATTTGGATCAGTTAGAAACATTATCGAAGAAACTCAAGGCGAAAACTTTACGAACTGAGACTCCTCAACAATCCATTGCTGCCACGAGGCTTCTTGCACGTGAGGGACTAAATGCGGAGCAGCTTGCACGTGACCTTAAGTCCTTTGAATTGAAGACAACATTTGAAGATGTTTTTCCGTCTGAAGCTACAACTGTCGAAGAGTATCTGCAGCAGGTCCATCAAATGACAATGGTCTCAGCTCTTCAAGAAGCTCAGAAGGATAACCTTAGAAGTTTTAATGATTACATGTTAAAAGTTTTGGAGGAGGATTGGCAGAAAGAAAAACGTGATTTCCTTCAAAGCCTAAGTCAGATTTCAACGTTACCCAGGACTAACACGACCTATACTAGCAGCGCTGGTAGTCGTTCTGGTCAAATAGCGTCCATAACTTCTAGCCCTCAAGTTTCATCTACTCCATCTAGTATGGAGCTTGTACCTTTAGCTAGCAAGCCCATCCCTGAGAAGAAAACATCTGTCTATGCAGAAGTTGTTAAAAATCTGAATAATGCAAGGCAGCGTGGATTACCGTTTAAACCTGCTTCAGCTTTCAAGGGTGCTTATGAGAGTTTAGGCCTTGATGCATCTGGTGGAAAATCAGTTAACATGCAGAAGATATGGCACCTTCTTCAGACATTAATGGGCGAAGATATAACCAGACAACGGGGTGCTTCAAAACGGATGTCATTAGTTATTGGGGCAAGGCGCCACCTGGAATGGGGGCATGAAAAGTACGTCATGGATACAATCCAAAGTCATCCTGCGCAGGCAGCCCTCGGAGGAGTTGTTGGAAATTTACAAAGAATTCGTGCCTTTCTTCGGATTCGTTTAAGAGATTATGGAGTTCTAGATTTTGATGCAGGTGATGCTCGTAGGCAGCCTCCTGTTGATACCACTTGGCAGCAGATCTACTTTTGCTTGAGAACTGGGTGTTATGATGAAGCAAGAGCTGTTGCTCTGTCATCTCGCACGTCAAACCAGTTTGCTCCTCTGCTTACTGAGTGGATTAATACTGGAGGTATGGTGCCTGCGGAGATTGCAGCTGCTGCATCAGAAGAATGTGAAAAAATGTTAAGAACGGGTGATCGTGTGGGCCGAGCTGCATATGACAAGAAAAAGTTGTTACTATATGCTCTCATATCTGGTTCTCGTAGGCAAATCGACCGCCTACTAAGAGATCTACCAACTCTTTTTAACACCATAGAGGATTTCTTGTGGTTCAAATTGTCAGCTGTAAGAGACTGCCCTGGTGGAGCTGCACCCATTGTCATGAATGAGAGCTTGGTACCATACACTTTGGATGATTTGCAGATTTACTTGAACAAATTTGACCCCTCATACTATACAAAAAATGGAAAGGACCCTCTGGTGTACCCATATGTTTTGCTTTTAAGCATTCAGTTGATACCAGGTGTGGTATACTTGTCCAAGGAAACTGGAGATGAAGGATATAACATTGATGCTGCCCACATATCAATTGTGCTAGCAGACCATGGGGTCCTTTCTGAAGGAGCTGGGGCTGGACAGAAAATGGGCGTGATGGATGCTTACGCAGAGGCATCTAGCATAATCAGGCAGTATGGGTCTGTGTATTTACGTCTTGGTAATCTTCAGATGGCATTAGAATATTATGCACAAGCTGCTGCTGCAGTCGGTGGTGGGCAGTTGTCATGGTCTGGAAGAGGTAATGTGGATCAACAAAGGCAGAGAAATTTGATGCTGAAGCAGCTCCTTACAGAACTGTTGTTACGGGATGGGGGCATCTATCTTTTACTTGGTTCAAGAGGTGCCGGAGAAGAAGGTGAATTGGGGCGATTTTTGACTGATGTAAAAGAGAGACAACAATTTCTGCTTGAAGCTGCTCACCAATGTCAGGAAGCTGGATTGTATGAAAAGTCTATAGAAATTCAGAAACGAATAGGGGCATTCTCGATGGCATTGGATACGATTAACAAGTGCCTTTCTGAAGCTATTTGTGCCCTCTCACGTGGTAGATTGGATGGTGAGAGTCGAACTGCTGGTCTCATTCACTCTGGAAATGAGATCTTGGAGATGCACAAATATTATCCTGAAATCAGTCCTCAAGAGAGGGAAAGTGTTTCAGAGCAGCATATTGTGTTAAGACAACTTGAGGCCGTACTGTCAATCCATAAATTGGCAAGAGGAGGCCATTATGCTGATGCTTTGAGGGAGGTTGCCAGACTTCCATTTCTTCCATTAGATCCTCGGACACCAGATGCTACCACTGATGTGTTCCAGAATTTATCTCCTCATGTCCAAGCCTGTGTTCCGGACCTCCTGAAGGTTGCGCTCACTTGTCTGGACAACATGGTGGATTCTGATGGATCGCTTCGCGCCTTGAGGGCTAAGATTGCTAGCTTCATTGCAAATAATTCCAGTAGGAATTGGCCTCGCGATTTGTATGAGAAAGTTGCCCGGAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

864

Amino Acids

95.92

Weight (kDa)

6.96

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41620 AT3G57350
fragaria_vesca	FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390
malus_domestica	MD00G1107400.v1.1 MD12G1080600.v1.1 MD14G1076700.v1.1
prunus_persica	Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1
pyrus_communis	pycom12g06710 pycom14g06500
rosa_chinensis	RchiOBHm_Chr3g0483381
rosa_laevigata	RLG00000023288
rosa_multiflora	Rmu_sc0006349.1_g000012
rosa_roxburghii	Rroxscaffold_6G00398400
rosa_rugosa	Rorug03G0205600
rosa_samantha	Rh3AG254000 Rh3CG288100 Rh3DG283900
rosa_wichuraiana	Rw0G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	995
AasI	GACNNNNNNGTC	1 cut(s)	1640
Acc16I	TGCGCA	1 cut(s)	909
Acc36I	ACCTGC	3 cut(s)	310, 691, 995
Acc65I	GGTACC	1 cut(s)	1429
AccB1I	GGYRCC	5 cut(s)	765, 849, 1168, 1429, 1931
AccB7I	CCANNNNNTGG	1 cut(s)	2299
AccBSI	CCGCTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	1563
AccII	CGCG	3 cut(s)	83, 2499, 2559
AccIII	TCCGGA	1 cut(s)	2434
AciI	CCGC	5 cut(s)	72, 81, 221, 1175, 1309
AclI	AACGTT	1 cut(s)	467
AclWI	GGATC	4 cut(s)	120, 1845, 2360, 2497
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	7 cut(s)	106, 937, 948, 1469, 1855, 2049, 2404
AcuI	CTGAAG	8 cut(s)	309, 672, 758, 1671, 1739, 1886, 2130, 2465
AcvI	CACGTG	3 cut(s)	206, 236, 2132
AcyI	GRCGYC	1 cut(s)	850
AfaI	GTAC	5 cut(s)	582, 878, 1431, 1517, 2283
AfeI	AGCGCT	1 cut(s)	502
AfiI	CCNNNNNNNGG	6 cut(s)	807, 862, 963, 2017, 2299, 2446
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	393
AhdI	GACNNNNNGTC	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	1116
AjnI	CCWGG	4 cut(s)	473, 855, 1390, 1552
AjuI	GAANNNNNNNTTGG	4 cut(s)	1409, 1441, 2415, 2447
AleI	CACNNNNGTG	1 cut(s)	2393
AloI	GAACNNNNNNTCC	2 cut(s)	151, 183
Alw26I	GTCTC	5 cut(s)	158, 346, 1377, 1975, 2171
AlwI	GGATC	4 cut(s)	120, 1845, 2360, 2497
AlwNI	CAGNNNCTG	1 cut(s)	1190
Aor13HI	TCCGGA	1 cut(s)	2434
Aor51HI	AGCGCT	1 cut(s)	502
AoxI	GGCC	6 cut(s)	3, 718, 1237, 2277, 2311, 2552
ApoI	RAATTY	7 cut(s)	106, 937, 948, 1469, 1855, 2049, 2404
ArsI	GACNNNNNNTTYG	6 cut(s)	439, 471, 812, 844, 2149, 2181
AseI	ATTAAT	2 cut(s)	782, 1152
Asp718I	GGTACC	1 cut(s)	1429
AspLEI	GCGC	6 cut(s)	85, 503, 852, 910, 2455, 2501
AspS9I	GGNCC	6 cut(s)	30, 322, 1237, 1504, 1642, 2437
AsuC2I	CCSGG	1 cut(s)	2581
AsuHPI	GGTGA	5 cut(s)	1019, 1238, 1958, 2000, 2159
AsuNHI	GCTAGC	3 cut(s)	590, 1627, 2519
AvaII	GGWCC	5 cut(s)	30, 322, 1504, 1642, 2437
BaeGI	GKGCMC	1 cut(s)	2125
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	5 cut(s)	765, 849, 1168, 1429, 1931
BauI	CACGAG	1 cut(s)	190
BbrPI	CACGTG	3 cut(s)	206, 236, 2132
BbsI	GAAGAC	1 cut(s)	266
BccI	CCATC	9 cut(s)	333, 571, 608, 1678, 1753, 1892, 2071, 2138, 2480
BceAI	ACGGC	1 cut(s)	2264
BciT130I	CCWGG	4 cut(s)	475, 857, 1392, 1554
BciVI	GTATCC	2 cut(s)	880, 2080
BcnI	CCSGG	1 cut(s)	2581
BcoDI	GTCTC	5 cut(s)	158, 346, 1377, 1975, 2171
BfaI	CTAG	8 cut(s)	495, 540, 567, 591, 992, 1628, 1707, 2520
BfmI	CTRYAG	4 cut(s)	98, 314, 1791, 2043
BfoI	RGCGCY	2 cut(s)	504, 853
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	3 cut(s)	310, 691, 995
BfuI	GTATCC	2 cut(s)	880, 2080
BglI	GCCNNNNNGGC	1 cut(s)	2507
BglII	AGATCT	3 cut(s)	1050, 1321, 2187
Bme1390I	CCNGG	5 cut(s)	475, 857, 1392, 1554, 2581
Bme18I	GGWCC	5 cut(s)	30, 322, 1504, 1642, 2437
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	1116
BmgT120I	GGNCC	6 cut(s)	30, 322, 1237, 1504, 1642, 2437
BmiI	GGNNCC	7 cut(s)	767, 851, 1170, 1431, 1506, 1643, 1933
BmrFI	CCNGG	5 cut(s)	475, 857, 1392, 1554, 2581
BmrI	ACTGGG	1 cut(s)	1080
BmtI	GCTAGC	3 cut(s)	594, 1631, 2523
BmuI	ACTGGG	1 cut(s)	1080
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	266
BpmI	CTGGAG	2 cut(s)	1179, 1602
BpuEI	CTTGAG	6 cut(s)	125, 531, 1084, 2211, 2294, 2524
BpuMI	CCSGG	1 cut(s)	2581
BsaAI	YACGTR	3 cut(s)	206, 236, 2132
BsaHI	GRCGYC	1 cut(s)	850
BsaI	GGTCTC	2 cut(s)	346, 2171
BsaJI	CCNNGG	6 cut(s)	473, 919, 1390, 1572, 1636, 2369
BsaWI	WCCGGW	1 cut(s)	2434
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 181, 915, 945, 1152, 1182
Bsc4I	CCNNNNNNNGG	6 cut(s)	807, 862, 963, 2017, 2299, 2446
Bse1I	ACTGG	5 cut(s)	1075, 1123, 1162, 1585, 2541
Bse3DI	GCAATG	2 cut(s)	180, 2526
BseAI	TCCGGA	1 cut(s)	2434
BseBI	CCWGG	4 cut(s)	475, 857, 1392, 1554
BseDI	CCNNGG	6 cut(s)	473, 919, 1390, 1572, 1636, 2369
BseGI	GGATG	7 cut(s)	600, 831, 901, 1450, 1693, 1903, 2149
BseLI	CCNNNNNNNGG	6 cut(s)	807, 862, 963, 2017, 2299, 2446
BseMI	GCAATG	2 cut(s)	180, 2526
BseMII	CTCAG	5 cut(s)	153, 357, 374, 597, 1134
BseNI	ACTGG	5 cut(s)	1075, 1123, 1162, 1585, 2541
BseRI	GAGGAG	8 cut(s)	37, 84, 159, 425, 939, 1122, 2322, 2403
BseSI	GKGCMC	1 cut(s)	2125
BseYI	CCCAGC	1 cut(s)	1658
BsgI	GTGCAG	1 cut(s)	1386
Bsh1236I	CGCG	3 cut(s)	83, 2499, 2559
Bsh1285I	CGRYCG	1 cut(s)	1309
BshFI	GGCC	6 cut(s)	5, 720, 1239, 2279, 2313, 2554
BshNI	GGYRCC	5 cut(s)	765, 849, 1168, 1429, 1931
BsiEI	CGRYCG	1 cut(s)	1309
BsiSI	CCGG	3 cut(s)	1935, 2435, 2581
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	6 cut(s)	807, 862, 963, 2017, 2299, 2446
BsmAI	GTCTC	5 cut(s)	158, 346, 1377, 1975, 2171
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	2 cut(s)	1539, 2069
BsnI	GGCC	6 cut(s)	5, 720, 1239, 2279, 2313, 2554
Bso31I	GGTCTC	2 cut(s)	346, 2171
Bsp1286I	GDGCHC	1 cut(s)	2125
Bsp13I	TCCGGA	1 cut(s)	2434
Bsp143I	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
Bsp19I	CCATGG	1 cut(s)	1636
Bsp68I	TCGCGA	1 cut(s)	2559
BspACI	CCGC	5 cut(s)	72, 81, 221, 1175, 1309
BspANI	GGCC	6 cut(s)	5, 720, 1239, 2279, 2313, 2554
BspCNI	CTCAG	5 cut(s)	154, 356, 373, 598, 1135
BspEI	TCCGGA	1 cut(s)	2434
BspFNI	CGCG	3 cut(s)	83, 2499, 2559
BspHI	TCATGA	1 cut(s)	1413
BspLI	GGNNCC	7 cut(s)	767, 851, 1170, 1431, 1506, 1643, 1933
BspMAI	CTGCAG	2 cut(s)	318, 1795
BspMI	ACCTGC	3 cut(s)	310, 691, 995
BspOI	GCTAGC	3 cut(s)	594, 1631, 2523
BspPI	GGATC	4 cut(s)	120, 1845, 2360, 2497
BspQI	GCTCTTC	1 cut(s)	354
BspT107I	GGYRCC	5 cut(s)	765, 849, 1168, 1429, 1931
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	2 cut(s)	346, 2171
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	180, 2526
BsrI	ACTGG	5 cut(s)	1075, 1123, 1162, 1585, 2541
BssECI	CCNNGG	6 cut(s)	473, 919, 1390, 1572, 1636, 2369
BssMI	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
BssNAI	GTATAC	1 cut(s)	1564
BssNI	GRCGYC	1 cut(s)	850
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	1572, 1636
Bst1107I	GTATAC	1 cut(s)	1564
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	4 cut(s)	475, 857, 1392, 1554
Bst4CI	ACNGT	4 cut(s)	301, 675, 1887, 2286
Bst6I	CTCTTC	3 cut(s)	300, 354, 1819
BstACI	GRCGYC	1 cut(s)	850
BstAFI	CTTAAG	1 cut(s)	242
BstAPI	GCANNNNNTGC	3 cut(s)	1010, 1190, 1784
BstBAI	YACGTR	3 cut(s)	206, 236, 2132
BstC8I	GCNNGC	7 cut(s)	231, 592, 596, 912, 1173, 1629, 2521
BstDEI	CTNAG	9 cut(s)	162, 343, 360, 374, 452, 606, 1143, 1316, 2511
BstDSI	CCRYGG	1 cut(s)	1636
BstENI	CCTNNNNNAGG	1 cut(s)	2444
BstF5I	GGATG	7 cut(s)	600, 831, 901, 1450, 1693, 1903, 2149
BstFNI	CGCG	3 cut(s)	83, 2499, 2559
BstH2I	RGCGCY	2 cut(s)	504, 853
BstHHI	GCGC	6 cut(s)	85, 503, 852, 910, 2455, 2501
BstKTI	GATC	9 cut(s)	37, 115, 1053, 1231, 1324, 1840, 2190, 2368, 2492
BstMAI	GTCTC	5 cut(s)	158, 346, 1377, 1975, 2171
BstMBI	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
BstMCI	CGRYCG	1 cut(s)	1309
BstNI	CCWGG	4 cut(s)	475, 857, 1392, 1554
BstNSI	RCATGY	2 cut(s)	397, 754
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	5 cut(s)	473, 855, 1390, 1552, 2579
BstSFI	CTRYAG	4 cut(s)	98, 314, 1791, 2043
BstSLI	GKGCMC	1 cut(s)	2125
BstUI	CGCG	3 cut(s)	83, 2499, 2559
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	4 cut(s)	1050, 1321, 2187, 2365
BstYI	RGATCY	4 cut(s)	1050, 1321, 2187, 2365
BstZ17I	GTATAC	1 cut(s)	1564
BsuI	GTATCC	2 cut(s)	880, 2080
BsuRI	GGCC	6 cut(s)	5, 720, 1239, 2279, 2313, 2554
BtgI	CCRYGG	1 cut(s)	1636
BtrI	CACGTC	1 cut(s)	1116
BtsCI	GGATG	7 cut(s)	600, 831, 901, 1450, 1693, 1903, 2149
BtsIMutI	CAGTG	1 cut(s)	2388
BtuMI	TCGCGA	1 cut(s)	2559
BveI	ACCTGC	3 cut(s)	310, 691, 995
Cac8I	GCNNGC	7 cut(s)	231, 592, 596, 912, 1173, 1629, 2521
CaiI	CAGNNNCTG	1 cut(s)	1190
CciI	TCATGA	1 cut(s)	1413
CfoI	GCGC	6 cut(s)	85, 503, 852, 910, 2455, 2501
Cfr13I	GGNCC	6 cut(s)	30, 322, 1237, 1504, 1642, 2437
CseI	GACGC	1 cut(s)	516
CsiI	ACCWGGT	1 cut(s)	1552
Csp6I	GTAC	5 cut(s)	581, 877, 1430, 1516, 2282
CviQI	GTAC	5 cut(s)	581, 877, 1430, 1516, 2282
DdeI	CTNAG	9 cut(s)	162, 343, 360, 374, 452, 606, 1143, 1316, 2511
DinI	GGCGCC	1 cut(s)	851
DpnI	GATC	9 cut(s)	36, 114, 1052, 1230, 1323, 1839, 2189, 2367, 2491
DpnII	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
DraI	TTTAAA	1 cut(s)	679
DrdI	GACNNNNNNGTC	1 cut(s)	1640
DriI	GACNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	1640
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	300, 354, 1819
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	3 cut(s)	300, 354, 1819
Eco130I	CCWWGG	2 cut(s)	1572, 1636
Eco147I	AGGCCT	1 cut(s)	720
Eco31I	GGTCTC	2 cut(s)	346, 2171
Eco47I	GGWCC	5 cut(s)	30, 322, 1504, 1642, 2437
Eco47III	AGCGCT	1 cut(s)	502
Eco57I	CTGAAG	8 cut(s)	309, 672, 758, 1671, 1739, 1886, 2130, 2465
Eco72I	CACGTG	3 cut(s)	206, 236, 2132
EcoNI	CCTNNNNNAGG	1 cut(s)	2444
EcoO109I	RGGNCCY	2 cut(s)	1504, 1642
EcoRI	GAATTC	1 cut(s)	948
EcoRII	CCWGG	4 cut(s)	473, 855, 1390, 1552
EcoT14I	CCWWGG	2 cut(s)	1572, 1636
EcoT22I	ATGCAT	1 cut(s)	730
EgeI	GGCGCC	1 cut(s)	851
EheI	GGCGCC	1 cut(s)	851
ErhI	CCWWGG	2 cut(s)	1572, 1636
FaqI	GGGAC	1 cut(s)	225
FauNDI	CATATG	2 cut(s)	1249, 1522
FblI	GTMKAC	1 cut(s)	1563
FokI	GGATG	7 cut(s)	587, 838, 888, 1457, 1700, 1910, 2156
FspBI	CTAG	8 cut(s)	495, 540, 567, 591, 992, 1628, 1707, 2520
FspI	TGCGCA	1 cut(s)	909
GlaI	GCGC	6 cut(s)	84, 502, 851, 909, 2454, 2500
GsaI	CCCAGC	1 cut(s)	1662
GsuI	CTGGAG	2 cut(s)	1179, 1602
HaeII	RGCGCY	2 cut(s)	504, 853
HaeIII	GGCC	6 cut(s)	5, 720, 1239, 2279, 2313, 2554
HapII	CCGG	3 cut(s)	1935, 2435, 2581
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	6 cut(s)	85, 503, 852, 910, 2455, 2501
Hin1I	GRCGYC	1 cut(s)	850
Hin6I	GCGC	6 cut(s)	83, 501, 850, 908, 2453, 2499
HinP1I	GCGC	6 cut(s)	83, 501, 850, 908, 2453, 2499
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	4 cut(s)	166, 967, 2152, 2480
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	3 cut(s)	1935, 2435, 2581
HphI	GGTGA	5 cut(s)	1019, 1238, 1958, 2000, 2159
Hpy166II	GTNNAC	3 cut(s)	748, 1516, 1564
Hpy8I	GTNNAC	3 cut(s)	748, 1516, 1564
HpyAV	CCTTC	8 cut(s)	87, 358, 452, 779, 1583, 1646, 1937, 2440
HpyCH4III	ACNGT	4 cut(s)	301, 675, 1887, 2286
HpyCH4IV	ACGT	8 cut(s)	205, 235, 433, 467, 879, 1115, 1741, 2131
HpyF3I	CTNAG	9 cut(s)	162, 343, 360, 374, 452, 606, 1143, 1316, 2511
HpySE526I	ACGT	8 cut(s)	205, 235, 433, 467, 879, 1115, 1741, 2131
Hsp92I	GRCGYC	1 cut(s)	850
HspAI	GCGC	6 cut(s)	83, 501, 850, 908, 2453, 2499
KasI	GGCGCC	1 cut(s)	849
Kpn2I	TCCGGA	1 cut(s)	2434
KpnI	GGTACC	1 cut(s)	1433
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	9 cut(s)	45, 79, 223, 574, 1135, 1397, 1655, 1878, 2583
MabI	ACCWGGT	1 cut(s)	1552
MaeI	CTAG	8 cut(s)	495, 540, 567, 591, 992, 1628, 1707, 2520
MaeII	ACGT	8 cut(s)	205, 235, 433, 467, 879, 1115, 1741, 2131
MaeIII	GTNAC	4 cut(s)	236, 468, 1266, 1890
MalI	GATC	9 cut(s)	36, 114, 1052, 1230, 1323, 1839, 2189, 2367, 2491
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
MfeI	CAATTG	1 cut(s)	1620
MflI	RGATCY	4 cut(s)	1050, 1321, 2187, 2365
MhlI	GDGCHC	1 cut(s)	2125
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	850
MlyI	GAGTC	2 cut(s)	160, 2161
MmeI	TCCRAC	1 cut(s)	913
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	730
MroI	TCCGGA	1 cut(s)	2434
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	1412, 2393
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	1187, 1376
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	3 cut(s)	1935, 2435, 2581
MspR9I	CCNGG	5 cut(s)	475, 857, 1392, 1554, 2581
MssI	GTTTAAAC	1 cut(s)	679
MunI	CAATTG	1 cut(s)	1620
Mva1269I	GAATGC	2 cut(s)	1539, 2069
MvaI	CCWGG	4 cut(s)	475, 857, 1392, 1554
MvnI	CGCG	3 cut(s)	83, 2499, 2559
NarI	GGCGCC	1 cut(s)	850
NciI	CCSGG	1 cut(s)	2581
NcoI	CCATGG	1 cut(s)	1636
NdeI	CATATG	2 cut(s)	1249, 1522
NdeII	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
NheI	GCTAGC	3 cut(s)	590, 1627, 2519
NlaIV	GGNNCC	7 cut(s)	767, 851, 1170, 1431, 1506, 1643, 1933
NmeAIII	GCCGAG	1 cut(s)	1265
NmuCI	GTSAC	1 cut(s)	236
NruI	TCGCGA	1 cut(s)	2559
NsbI	TGCGCA	1 cut(s)	909
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	2 cut(s)	397, 754
OliI	CACNNNNGTG	1 cut(s)	2393
PagI	TCATGA	1 cut(s)	1413
PaqCI	CACCTGC	1 cut(s)	995
PceI	AGGCCT	1 cut(s)	720
PciI	ACATGT	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	1237
PctI	GAATGC	2 cut(s)	1539, 2069
PfeI	GAWTC	2 cut(s)	967, 2480
PflMI	CCANNNNNTGG	1 cut(s)	2299
PleI	GAGTC	2 cut(s)	160, 2160
PluTI	GGCGCC	1 cut(s)	853
PmaCI	CACGTG	3 cut(s)	206, 236, 2132
PmeI	GTTTAAAC	1 cut(s)	679
PmlI	CACGTG	3 cut(s)	206, 236, 2132
PpsI	GAGTC	2 cut(s)	160, 2160
Ppu21I	YACGTR	3 cut(s)	206, 236, 2132
PpuMI	RGGWCCY	2 cut(s)	1504, 1642
PscI	ACATGT	1 cut(s)	393
PshAI	GACNNNNGTC	1 cut(s)	338
PshBI	ATTAAT	2 cut(s)	782, 1152
Psp1406I	AACGTT	1 cut(s)	467
Psp5II	RGGWCCY	2 cut(s)	1504, 1642
Psp6I	CCWGG	4 cut(s)	473, 855, 1390, 1552
PspCI	CACGTG	3 cut(s)	206, 236, 2132
PspFI	CCCAGC	1 cut(s)	1658
PspGI	CCWGG	4 cut(s)	473, 855, 1390, 1552
PspN4I	GGNNCC	7 cut(s)	767, 851, 1170, 1431, 1506, 1643, 1933
PspPI	GGNCC	6 cut(s)	30, 322, 1237, 1504, 1642, 2437
PspPPI	RGGWCCY	2 cut(s)	1504, 1642
PsrI	GAACNNNNNNTAC	2 cut(s)	1875, 1907
PstI	CTGCAG	2 cut(s)	318, 1795
PstNI	CAGNNNCTG	1 cut(s)	1190
PsuI	RGATCY	4 cut(s)	1050, 1321, 2187, 2365
PvuII	CAGCTG	2 cut(s)	1187, 1376
RruI	TCGCGA	1 cut(s)	2559
RsaI	GTAC	5 cut(s)	582, 878, 1431, 1517, 2283
RsaNI	GTAC	5 cut(s)	581, 877, 1430, 1516, 2282
RseI	CAYNNNNRTG	2 cut(s)	1412, 2393
SapI	GCTCTTC	1 cut(s)	354
Sau3AI	GATC	9 cut(s)	34, 112, 1050, 1228, 1321, 1837, 2187, 2365, 2489
Sau96I	GGNCC	6 cut(s)	30, 322, 1237, 1504, 1642, 2437
SchI	GAGTC	2 cut(s)	160, 2161
ScrFI	CCNGG	5 cut(s)	475, 857, 1392, 1554, 2581
SduI	GDGCHC	1 cut(s)	2125
SexAI	ACCWGGT	1 cut(s)	1552
SfcI	CTRYAG	4 cut(s)	98, 314, 1791, 2043
SfoI	GGCGCC	1 cut(s)	851
SinI	GGWCC	5 cut(s)	30, 322, 1504, 1642, 2437
SmiMI	CAYNNNNRTG	2 cut(s)	1412, 2393
SmlI	CTYRAG	7 cut(s)	140, 242, 546, 1063, 2226, 2273, 2503
SmoI	CTYRAG	7 cut(s)	140, 242, 546, 1063, 2226, 2273, 2503
SseBI	AGGCCT	1 cut(s)	720
SsiI	CCGC	5 cut(s)	72, 81, 221, 1175, 1309
SspDI	GGCGCC	1 cut(s)	849
SspI	AATATT	2 cut(s)	1772, 2207
SspMI	CTAG	8 cut(s)	495, 540, 567, 591, 992, 1628, 1707, 2520
StuI	AGGCCT	1 cut(s)	720
StyD4I	CCNGG	5 cut(s)	473, 855, 1390, 1552, 2579
StyI	CCWWGG	2 cut(s)	1572, 1636
TaaI	ACNGT	4 cut(s)	301, 675, 1887, 2286
TaiI	ACGT	8 cut(s)	208, 238, 436, 470, 882, 1118, 1744, 2134
TaqI	TCGA	6 cut(s)	63, 131, 303, 1305, 2075, 2155
TaqII	GACCGA	1 cut(s)	47
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	967, 2480
TscAI	CASTG	1 cut(s)	2395
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	7 cut(s)	543, 885, 1098, 1430, 1602, 2049, 2515
TspGWI	ACGGA	2 cut(s)	273, 838
TspRI	CASTG	1 cut(s)	2395
Van91I	CCANNNNNTGG	1 cut(s)	2299
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	5 cut(s)	30, 322, 1504, 1642, 2437
VspI	ATTAAT	2 cut(s)	782, 1152
XagI	CCTNNNNNAGG	1 cut(s)	2444
XapI	RAATTY	7 cut(s)	106, 937, 948, 1469, 1855, 2049, 2404
XbaI	TCTAGA	1 cut(s)	991
XceI	RCATGY	2 cut(s)	397, 754
XmiI	GTMKAC	1 cut(s)	1563
XspI	CTAG	8 cut(s)	495, 540, 567, 591, 992, 1628, 1707, 2520
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.