Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005404

Physical Location & Seq

Genomic Coordinates Reverse (-)

22477004 .. 22478865

Gene Structure 1862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1107400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTGAAGAGTATCTGCAGCAGACATGCTTGTGTTTCGTTTTTGAATATTTGTCTTTGGGATACATTATATTTGCCTCCCCCTATAATTGAGACAAATTTATGTTTTGTCCATCAAATGGCAATGGTCTCAGCTCTTCAAGAAGCTCAGAAGGATAACCTTAGAAGTTTTAATGATTACATGTTAAAAGTTTTGGAGGAGGATTGGCAAAAGGAAAAACGTGATTTCCTTCAAAGCTTAAGCCAGATTTCGACGTTACCCAGGACCAACATGACTTATACTAGCAGCGGTGGTAGCCATTCTGGTCAAATAGCATCCATAACTTCTAGCCCTCAAGTTTCATCTTATCCATCTAGCATGGAGCTTGTACATTTAGAAAGCAAGCCCATCCGTGACAAGAAAGCCTCTGTCTATGCTGAAGTTGTAAAAAGTCTGAATAATGCAAGGCAGCGCGGATTACCGTATAAGGAATCTGAAATTATGAGCTCAAGTGAATTATTTCATGCTCCATTGTTTGATAAATGCCCAAGAGGCTGCTTCGAATTATTAAACTATAATGCAACTCAATATGCTGTCAACCTAACAGTTCTTATTATTCCAACTGCCAGAGTATGCATACTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

209

Amino Acids

23.52

Weight (kDa)

6.94

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41620 AT3G57350
fragaria_vesca	FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390 FvH4_6g24390
malus_domestica	MD00G1107400.v1.1 MD12G1080600.v1.1 MD14G1076700.v1.1
prunus_persica	Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1 Prupe.7G054800_v2.0.a1
pyrus_communis	pycom12g06710 pycom14g06500
rosa_chinensis	RchiOBHm_Chr3g0483381
rosa_laevigata	RLG00000023288
rosa_multiflora	Rmu_sc0006349.1_g000012
rosa_roxburghii	Rroxscaffold_6G00398400
rosa_rugosa	Rorug03G0205600
rosa_samantha	Rh3AG254000 Rh3CG288100 Rh3DG283900
rosa_wichuraiana	Rw0G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	288, 453
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	118
AflII	CTTAAG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	5 cut(s)	7, 46, 140, 233, 623
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	5 cut(s)	134, 146, 237, 364, 486
AluI	AGCT	5 cut(s)	134, 146, 237, 364, 486
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	2 cut(s)	86, 133
ApeKI	GCWGC	4 cut(s)	18, 285, 448, 534
ApoI	RAATTY	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	264
AsuII	TTCGAA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	4 cut(s)	30, 297, 460, 521
BccI	CCATC	3 cut(s)	120, 358, 395
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	86, 133
BfaI	CTAG	3 cut(s)	282, 327, 354
BfmI	CTRYAG	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	55
BglI	GCCNNNNNGGC	1 cut(s)	531
BisI	GCNGC	4 cut(s)	19, 286, 449, 535
BlsI	GCNGC	4 cut(s)	20, 287, 450, 536
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	2 cut(s)	318, 472
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	314, 387
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	144, 161
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	4 cut(s)	30, 297, 460, 521
Bsh1236I	CGCG	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	86, 133
Bso31I	GGTCTC	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp1407I	TGTACA	1 cut(s)	367
BspACI	CCGC	2 cut(s)	288, 453
BspCNI	CTCAG	2 cut(s)	143, 160
BspFNI	CGCG	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	540
BspTI	CTTAAG	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	462, 586
Bst6I	CTCTTC	2 cut(s)	2, 141
BstAFI	CTTAAG	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	367
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	130, 147, 161
BstF5I	GGATG	2 cut(s)	314, 387
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	453
BstMAI	GTCTC	2 cut(s)	86, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 531
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	2 cut(s)	29, 184
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	4 cut(s)	30, 297, 460, 521
BsuI	GTATCC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	314, 387
Cac8I	GCNNGC	1 cut(s)	383
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	5 cut(s)	26, 181, 271, 358, 503
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	130, 147, 161
Eam1104I	CTCTTC	2 cut(s)	2, 141
EarI	CTCTTC	2 cut(s)	2, 141
Ecl136II	GAGCTC	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	5 cut(s)	29, 184, 274, 361, 506
FatI	CATG	5 cut(s)	25, 180, 270, 357, 502
Fnu4HI	GCNGC	4 cut(s)	19, 286, 449, 535
FokI	GGATG	2 cut(s)	301, 374
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	4 cut(s)	19, 286, 449, 535
FspBI	CTAG	3 cut(s)	282, 327, 354
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	4 cut(s)	19, 286, 449, 535
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	5 cut(s)	29, 184, 274, 361, 506
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	150, 435, 475
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	145, 239
HpyCH4III	ACNGT	2 cut(s)	462, 586
HpyCH4IV	ACGT	2 cut(s)	220, 254
HpyCH4V	TGCA	4 cut(s)	18, 443, 560, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 531
HpyF3I	CTNAG	3 cut(s)	130, 147, 161
HpySE526I	ACGT	2 cut(s)	220, 254
Hsp92II	CATG	5 cut(s)	29, 184, 274, 361, 506
HspAI	GCGC	1 cut(s)	451
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	361, 511
LpnPI	CCDG	5 cut(s)	247, 257, 274, 288, 619
Lsp1109I	GCAGC	4 cut(s)	30, 297, 460, 521
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	3 cut(s)	282, 327, 354
MaeII	ACGT	2 cut(s)	220, 254
MaeIII	GTNAC	2 cut(s)	255, 392
MboII	GAAGA	2 cut(s)	19, 128
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	5 cut(s)	87, 97, 477, 494, 542
MmeI	TCCRAC	1 cut(s)	623
MnlI	CCTC	6 cut(s)	87, 190, 193, 342, 415, 524
Mph1103I	ATGCAT	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	4 cut(s)	171, 185, 239, 548
MslI	CAYNNNNRTG	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	294, 531
NlaIII	CATG	5 cut(s)	29, 184, 274, 361, 506
NmuCI	GTSAC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	617
NspI	RCATGY	2 cut(s)	29, 184
NspV	TTCGAA	1 cut(s)	540
PciI	ACATGT	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	470
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	20, 287, 450, 536
PscI	ACATGT	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	171, 185, 239, 548
SatI	GCNGC	4 cut(s)	19, 286, 449, 535
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	9 cut(s)	136, 148, 162, 223, 239, 257, 366, 488, 582
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	3 cut(s)	238, 333, 487
SmoI	CTYRAG	3 cut(s)	238, 333, 487
Sse9I	AATT	5 cut(s)	87, 97, 477, 494, 542
SsiI	CCGC	2 cut(s)	288, 453
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	3 cut(s)	282, 327, 354
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	462, 586
TaiI	ACGT	2 cut(s)	223, 257
TaqI	TCGA	2 cut(s)	251, 540
TasI	AATT	5 cut(s)	87, 97, 477, 494, 542
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	4 cut(s)	171, 185, 239, 548
Tru9I	TTAA	4 cut(s)	171, 185, 239, 548
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	4 cut(s)	18, 285, 448, 534
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	330, 491
TspGWI	ACGGA	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	2 cut(s)	29, 184
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	3 cut(s)	282, 327, 354
Zsp2I	ATGCAT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.