Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008796

Physical Location & Seq

Genomic Coordinates Forward (+)

17527167 .. 17528937

Gene Structure 1771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCATGCGAAGACAGACTCGGAGGCAACAAGCATCGACGCAGCGGCTTTGTCTCCGCCGCGTTCAGCGATTAGACCTCTTTACTATGTACAGAGTCCATCAAACCATGACGTGGAGAAGATGTCATTTGGTTCTGGTTGCAGCCTAATGGGTTCACCTACACATCCACATTACTACCATTGCTCACCAATCCATCACTCCCGTGAGTCATCCACCTCTCGCTTCTCTGACCGTGCTCTCCTCTCTTACAAGTCCATCCGTGAACGTCGCCGATACATCAACGACGGAGACGACAAAACTGACGGCGGAGATGACGACGACCCGTTTCGGAATGTGCGACTCTACGTTTGGTTGCTCCTCTCCGTAATCTTCTTGTTCACAGTCTTCTCTCTTATACTCTGGGGTGCTAGCAAATCCTACCCTCCCAAAGTTACTGTAAAGGGGATGCTGGTGAGGGACTTGAACTTGCAGGCAGGGAACGATCTTAGCGGAGTGCCTACGGACATGTTGTCTCTTAATTCGACGGTCAGGATATATTACCGTAACCCATCAACTTTCTTTGCCGTCCACGTCACTGCTTCTCCTCTTCTCCTTCACTACTCCAACCTCCTACTATCCTCCGGTGAGATGAACAAGTTCACGGTTGGTAGAAATGGCGAAACGAACGTAGTGACGGTGGTGCAAGGCCATCAGATTCCCCTCTACGGTGGTGTTTCTTTCCATCTTGATACACTCTCCCTGCCGCTTAATCTCACTATCGTCCTCCATTCAAAAGCTTACATTTTGGGAAGACTCGTCACCTCCAAGTTCTATACAAGGATCATCTGCTCATTCACTCTCGACGCCAACCATCTCCCAAAATCCATCTCTCTTCTCCGCTCCTGTATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

297

Amino Acids

33.11

Weight (kDa)

9.1

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41990
fragaria_vesca	FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020
malus_domestica	MD05G1129000.v1.1 MD10G1132300.v1.1
prunus_persica	Prupe.8G173100_v2.0.a1 Prupe.8G173100_v2.0.a1
pyrus_communis	pycom05g12560 pycom10g11350
rosa_chinensis	RchiOBHm_Chr6g0279601
rosa_laevigata	RLG00000013134
rosa_multiflora	Rmu_sc0004010.1_g000004 Rmu_sc0004649.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188800
rosa_rugosa	Rorug06G0126400
rosa_samantha	Rh6AG234600 Rh6BG239100 Rh6CG241100 Rh6DG232600
rosa_wichuraiana	Rw6G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	879
AccII	CGCG	1 cut(s)	61
AciI	CCGC	7 cut(s)	44, 56, 59, 306, 489, 743, 877
AclWI	GGATC	1 cut(s)	827
AcyI	GRCGYC	1 cut(s)	843
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	112, 704
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	2 cut(s)	463, 771
AhdI	GACNNNNNGTC	1 cut(s)	508
AjiI	CACGTC	2 cut(s)	112, 571
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	776
AluI	AGCT	1 cut(s)	776
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	3 cut(s)	57, 282, 516
AlwI	GGATC	1 cut(s)	827
AoxI	GGCC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	41, 141
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
Asp700I	GAANNNNTTC	1 cut(s)	635
AsuHPI	GGTGA	5 cut(s)	147, 177, 463, 635, 790
AsuNHI	GCTAGC	1 cut(s)	407
BbsI	GAAGAC	3 cut(s)	17, 376, 796
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	53, 153
BccI	CCATC	8 cut(s)	106, 201, 263, 556, 696, 729, 858, 872
BceAI	ACGGC	2 cut(s)	319, 548
BcoDI	GTCTC	3 cut(s)	57, 282, 516
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	5 cut(s)	42, 45, 59, 142, 743
BlsI	GCNGC	5 cut(s)	43, 46, 60, 143, 744
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgBI	CACGTC	2 cut(s)	112, 571
BmsI	GCATC	2 cut(s)	42, 435
BmtI	GCTAGC	1 cut(s)	411
BpiI	GAAGAC	3 cut(s)	17, 376, 796
BsaHI	GRCGYC	1 cut(s)	843
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 704
Bse3DI	GCAATG	1 cut(s)	178
BseGI	GGATG	4 cut(s)	163, 209, 255, 450
BseLI	CCNNNNNNNGG	2 cut(s)	112, 704
BseMI	GCAATG	1 cut(s)	178
BseRI	GAGGAG	3 cut(s)	230, 347, 573
BseXI	GCAGC	2 cut(s)	53, 153
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	112, 704
BsmAI	GTCTC	3 cut(s)	57, 282, 516
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	481, 819
BspACI	CCGC	7 cut(s)	44, 56, 59, 306, 489, 743, 877
BspANI	GGCC	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	411
BspPI	GGATC	1 cut(s)	827
BsrBI	CCGCTC	1 cut(s)	879
BsrDI	GCAATG	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	88
BssMI	GATC	2 cut(s)	481, 819
BssNI	GRCGYC	1 cut(s)	843
Bst4CI	ACNGT	8 cut(s)	233, 382, 436, 526, 542, 643, 676, 707
Bst6I	CTCTTC	2 cut(s)	591, 876
BstACI	GRCGYC	1 cut(s)	843
BstAUI	TGTACA	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	6, 409, 471
BstDEI	CTNAG	1 cut(s)	485
BstF5I	GGATG	4 cut(s)	163, 209, 255, 450
BstFNI	CGCG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	484, 822
BstMAI	GTCTC	3 cut(s)	57, 282, 516
BstMBI	GATC	2 cut(s)	481, 819
BstNSI	RCATGY	2 cut(s)	8, 508
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	53, 153
BstV2I	GAAGAC	3 cut(s)	17, 376, 796
BsuRI	GGCC	1 cut(s)	687
BtrI	CACGTC	2 cut(s)	112, 571
BtsCI	GGATG	4 cut(s)	163, 209, 255, 450
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	3 cut(s)	6, 409, 471
CseI	GACGC	2 cut(s)	47, 851
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	5, 107, 505
CviJI	RGCY	4 cut(s)	47, 144, 687, 776
CviKI_1	RGCY	4 cut(s)	47, 144, 687, 776
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	2 cut(s)	483, 821
DpnII	GATC	2 cut(s)	481, 819
DriI	GACNNNNNGTC	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	591, 876
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	2 cut(s)	591, 876
EciI	GGCGGA	2 cut(s)	45, 321
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	3 cut(s)	8, 110, 508
FaiI	YATR	7 cut(s)	6, 87, 108, 395, 506, 535, 813
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	3 cut(s)	4, 106, 504
Fnu4HI	GCNGC	5 cut(s)	42, 45, 59, 142, 743
FokI	GGATG	4 cut(s)	150, 196, 242, 457
Fsp4HI	GCNGC	5 cut(s)	42, 45, 59, 142, 743
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	5 cut(s)	42, 45, 59, 142, 743
HaeIII	GGCC	1 cut(s)	687
HapII	CCGG	1 cut(s)	621
HgaI	GACGC	2 cut(s)	47, 851
Hin1I	GRCGYC	1 cut(s)	843
Hin1II	CATG	3 cut(s)	8, 110, 508
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	6 cut(s)	17, 94, 206, 339, 694, 792
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	5 cut(s)	147, 177, 463, 635, 790
Hpy166II	GTNNAC	5 cut(s)	155, 263, 378, 568, 639
Hpy188I	TCNGA	4 cut(s)	22, 229, 330, 693
Hpy188III	TCNNGA	3 cut(s)	529, 725, 839
Hpy8I	GTNNAC	5 cut(s)	155, 263, 378, 568, 639
Hpy99I	CGWCG	6 cut(s)	41, 270, 287, 320, 526, 845
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	8 cut(s)	233, 382, 436, 526, 542, 643, 676, 707
HpyCH4IV	ACGT	5 cut(s)	111, 265, 345, 570, 666
HpyCH4V	TGCA	4 cut(s)	4, 141, 469, 682
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	5 cut(s)	111, 265, 345, 570, 666
Hsp92I	GRCGYC	1 cut(s)	843
Hsp92II	CATG	3 cut(s)	8, 110, 508
Kzo9I	GATC	2 cut(s)	481, 819
LmnI	GCTCC	2 cut(s)	360, 884
LpnPI	CCDG	8 cut(s)	120, 385, 434, 455, 459, 514, 634, 752
Lsp1109I	GCAGC	2 cut(s)	53, 153
LweI	GCATC	2 cut(s)	42, 435
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	5 cut(s)	111, 265, 345, 570, 666
MaeIII	GTNAC	5 cut(s)	430, 542, 571, 670, 796
MalI	GATC	2 cut(s)	483, 821
MbiI	CCGCTC	1 cut(s)	879
MboI	GATC	2 cut(s)	481, 819
MboII	GAAGA	7 cut(s)	22, 130, 361, 376, 578, 801, 863
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	517
MlyI	GAGTC	5 cut(s)	11, 103, 215, 333, 786
MmeI	TCCRAC	1 cut(s)	627
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	3 cut(s)	516, 747, 892
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	61
NdeII	GATC	2 cut(s)	481, 819
NheI	GCTAGC	1 cut(s)	407
NlaIII	CATG	3 cut(s)	8, 110, 508
NmuCI	GTSAC	3 cut(s)	571, 670, 796
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 508
OliI	CACNNNNGTG	1 cut(s)	201
PaeI	GCATGC	1 cut(s)	8
PciI	ACATGT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 334
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	694
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	43, 46, 60, 143, 744
PleI	GAGTC	5 cut(s)	11, 102, 214, 333, 786
PpsI	GAGTC	5 cut(s)	11, 102, 214, 333, 786
PscI	ACATGT	1 cut(s)	504
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	516, 747, 892
SatI	GCNGC	5 cut(s)	42, 45, 59, 142, 743
Sau3AI	GATC	2 cut(s)	481, 819
SchI	GAGTC	5 cut(s)	11, 103, 215, 333, 786
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	2 cut(s)	42, 435
SmiMI	CAYNNNNRTG	1 cut(s)	201
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	7 cut(s)	44, 56, 59, 306, 489, 743, 877
SspMI	CTAG	1 cut(s)	408
TaaI	ACNGT	8 cut(s)	233, 382, 436, 526, 542, 643, 676, 707
TaiI	ACGT	5 cut(s)	114, 268, 348, 573, 669
TaqI	TCGA	3 cut(s)	36, 521, 840
TasI	AATT	1 cut(s)	517
TatI	WGTACW	1 cut(s)	88
TauI	GCSGC	3 cut(s)	47, 61, 745
TfiI	GAWTC	1 cut(s)	694
Tru1I	TTAA	3 cut(s)	516, 747, 892
Tru9I	TTAA	3 cut(s)	516, 747, 892
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	3 cut(s)	571, 670, 796
TseI	GCWGC	2 cut(s)	41, 141
Tsp45I	GTSAC	3 cut(s)	571, 670, 796
TspDTI	ATGAA	1 cut(s)	644
TspGWI	ACGGA	4 cut(s)	248, 300, 352, 515
TspRI	CASTG	1 cut(s)	580
Van91I	CCANNNNNTGG	1 cut(s)	112
XceI	RCATGY	2 cut(s)	8, 508
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.