Prupe.8G173100_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0008796
Physical Location & Seq
Forward (+)
17635436 .. 17638171
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G173100.2

Sequence Viewer

Length: 933 bp
ATGCACGCGAAGTCGGATTCGGAGGTGACGAGCGTGGAGCAGTCCACGCCTCCGCGATCGCCGCGCAGGCCGATTTACTACGTGCAGAGCCCGTCGAACCACGACGTGGAGAAGATGTCGTACGGCTCGAGTCCGGCCGGGTCGCCTGGGCACCACTTCTACCACTGCTCGCCCATCCACCACTCGCGCGAGTCCTCCACATCGCGCTTCTCAGCCTCTCTCAAGAACCCCCGCAGCCTCTCCGCCTGGCGGAAGCTGCAGCGCGGCGAGGAAGTCGAAGAATCCGACGACGACGACGACGAAAATGACACCGGTTTCTGGAAAGGAGGCCCCGGCCGCAGCGTCAGGTTGTACTTCTGCTTCGCGCTGCTGTTCGTTGTACTCTTCACGGCGTTCTCGCTGATCCTGTGGGGCGCCAGCAAGGCTTATGAGCCGCAGGTCATCGTCAAGAGTATTGTGTTCGAGAGTTTTGACATACAAGCGGGGAGCGACAGGACGGGGGTGCCGACGGATATGCTGTCGTTGAATTCGACGGTCAGGATTCATTACAGAAATCCGGCGACATTCTTTGGCGTTCACGTCACGTCGACGCCGCTGGAGCTTCACTACTACCAGCTCAAAGTGGCGTCCGGACAGCAGATTGAAAACTTTTACCAAGCAAGGAAGACGCATCGGACAATAAGGACAGTGGTGCTAGGGTCCCAAGTGGCTCTTTATGGTGGAGTTTCAGTTGTTCAAGATGTTAGCGAAAATCTCCGGAGACAGAGAGTGGCCGTGCCGCTGAATCTGACGTTCGTTGTGAGGTCAAGAGCCTACATTCTGGGAAAACTAGTGAAGTCCAAGTTTTATGAGAGAATCAGATGCTCTGTCACTCTTAGAGGAAGCAATCTAGGCAAGCACTCTAATTTGACAAATTCTTGTGTCTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

311

Amino Acids

34.92

Weight (kDa)

9.37

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 427
AccB1I GGYRCC 3 cut(s) 150, 413, 502
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 1 cut(s) 587
AccII CGCG 8 cut(s) 8, 55, 64, 187, 189, 205, 264, 365
AccIII TCCGGA 2 cut(s) 629, 756
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 3 cut(s) 135, 334, 771
AcsI RAATTY 2 cut(s) 526, 913
AcyI GRCGYC 3 cut(s) 414, 590, 626
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 3 cut(s) 122, 353, 381
AfiI CCNNNNNNNGG 3 cut(s) 106, 249, 318
AgeI ACCGGT 1 cut(s) 311
AgsI TTSAA 3 cut(s) 526, 644, 737
AhlI ACTAGT 1 cut(s) 829
AjiI CACGTC 3 cut(s) 106, 580, 585
AjnI CCWGG 2 cut(s) 145, 245
AluBI AGCT 3 cut(s) 256, 601, 616
AluI AGCT 3 cut(s) 256, 601, 616
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 1 cut(s) 397
Ama87I CYCGRG 1 cut(s) 127
Aor13HI TCCGGA 2 cut(s) 629, 756
AoxI GGCC 5 cut(s) 68, 135, 328, 334, 771
ApeKI GCWGC 5 cut(s) 234, 256, 259, 339, 367
ApoI RAATTY 2 cut(s) 526, 913
AsiGI ACCGGT 1 cut(s) 311
AsiSI GCGATCGC 1 cut(s) 59
AspLEI GCGC 6 cut(s) 66, 189, 207, 264, 367, 416
AspS9I GGNCC 2 cut(s) 329, 699
AsuC2I CCSGG 2 cut(s) 139, 333
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 1 cut(s) 699
BaeGI GKGCMC 1 cut(s) 153
BanI GGYRCC 3 cut(s) 150, 413, 502
BanII GRGCYC 1 cut(s) 92
BarI GAAGNNNNNNTAC 4 cut(s) 104, 136, 344, 376
BbsI GAAGAC 1 cut(s) 671
BbvI GCAGC 5 cut(s) 243, 246, 271, 351, 354
BccI CCATC 1 cut(s) 182
BceAI ACGGC 3 cut(s) 139, 405, 758
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 2 cut(s) 147, 247
BcnI CCSGG 2 cut(s) 139, 333
BcoDI GTCTC 1 cut(s) 754
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 3 cut(s) 695, 830, 890
BfmI CTRYAG 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 427
BglI GCCNNNNNGGC 2 cut(s) 67, 422
Bme1390I CCNGG 4 cut(s) 139, 147, 247, 333
Bme18I GGWCC 1 cut(s) 699
BmeT110I CYCGRG 1 cut(s) 127
BmgBI CACGTC 3 cut(s) 106, 580, 585
BmgT120I GGNCC 2 cut(s) 329, 699
BmiI GGNNCC 6 cut(s) 152, 331, 415, 504, 700, 701
BmrFI CCNGG 4 cut(s) 139, 147, 247, 333
BmsI GCATC 2 cut(s) 679, 851
BpiI GAAGAC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 2 cut(s) 139, 333
BsaAI YACGTR 1 cut(s) 82
BsaHI GRCGYC 3 cut(s) 414, 590, 626
BsaJI CCNNGG 2 cut(s) 146, 331
BsaWI WCCGGW 3 cut(s) 311, 629, 756
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 714, 744
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 249, 318
Bse118I RCCGGY 1 cut(s) 311
BseAI TCCGGA 2 cut(s) 629, 756
BseBI CCWGG 2 cut(s) 147, 247
BseDI CCNNGG 2 cut(s) 146, 331
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 106, 249, 318
BseMII CTCAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 153
BseX3I CGGCCG 2 cut(s) 135, 334
BseXI GCAGC 5 cut(s) 243, 246, 271, 351, 354
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 8 cut(s) 8, 55, 64, 187, 189, 205, 264, 365
Bsh1285I CGRYCG 3 cut(s) 59, 138, 337
BshFI GGCC 5 cut(s) 70, 137, 330, 336, 773
BshNI GGYRCC 3 cut(s) 150, 413, 502
BshTI ACCGGT 1 cut(s) 311
BsiEI CGRYCG 3 cut(s) 59, 138, 337
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 7 cut(s) 134, 138, 312, 333, 557, 630, 757
BsiWI CGTACG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 3 cut(s) 106, 249, 318
BsmAI GTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 5 cut(s) 70, 137, 330, 336, 773
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 92, 153
Bsp13I TCCGGA 2 cut(s) 629, 756
Bsp143I GATC 2 cut(s) 56, 402
BspANI GGCC 5 cut(s) 70, 137, 330, 336, 773
BspCNI CTCAG 1 cut(s) 224
BspEI TCCGGA 2 cut(s) 629, 756
BspFNI CGCG 8 cut(s) 8, 55, 64, 187, 189, 205, 264, 365
BspLI GGNNCC 6 cut(s) 152, 331, 415, 504, 700, 701
BspMAI CTGCAG 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 3 cut(s) 150, 413, 502
BsrFI RCCGGY 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 146, 331
BssMI GATC 2 cut(s) 56, 402
BssNI GRCGYC 3 cut(s) 414, 590, 626
Bst2UI CCWGG 2 cut(s) 147, 247
Bst4CI ACNGT 2 cut(s) 535, 688
Bst6I CTCTTC 1 cut(s) 389
BstACI GRCGYC 3 cut(s) 414, 590, 626
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 5 cut(s) 6, 68, 170, 418, 896
BstDEI CTNAG 2 cut(s) 211, 875
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 8 cut(s) 8, 55, 64, 187, 189, 205, 264, 365
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 6 cut(s) 66, 189, 207, 264, 367, 416
BstKTI GATC 2 cut(s) 59, 405
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 2 cut(s) 56, 402
BstMCI CGRYCG 3 cut(s) 59, 138, 337
BstMWI GCNNNNNNNGC 8 cut(s) 46, 61, 67, 256, 336, 422, 598, 891
BstNI CCWGG 2 cut(s) 147, 247
BstSCI CCNGG 4 cut(s) 137, 145, 245, 331
BstSFI CTRYAG 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 8 cut(s) 8, 55, 64, 187, 189, 205, 264, 365
BstV1I GCAGC 5 cut(s) 243, 246, 271, 351, 354
BstV2I GAAGAC 1 cut(s) 671
BstZI CGGCCG 2 cut(s) 135, 334
BsuRI GGCC 5 cut(s) 70, 137, 330, 336, 773
BtgZI GCGATG 1 cut(s) 186
BtrI CACGTC 3 cut(s) 106, 580, 585
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 163, 693
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 5 cut(s) 6, 68, 170, 418, 896
CfoI GCGC 6 cut(s) 66, 189, 207, 264, 367, 416
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 329, 699
CseI GACGC 4 cut(s) 331, 598, 615, 676
Csp6I GTAC 3 cut(s) 121, 352, 380
CspAI ACCGGT 1 cut(s) 311
CviQI GTAC 3 cut(s) 121, 352, 380
DdeI CTNAG 2 cut(s) 211, 875
DinI GGCGCC 1 cut(s) 415
DpnI GATC 2 cut(s) 58, 404
DpnII GATC 2 cut(s) 56, 402
DraIII CACNNNGTG 1 cut(s) 106
EaeI YGGCCR 3 cut(s) 135, 334, 771
EagI CGGCCG 2 cut(s) 135, 334
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EciI GGCGGA 2 cut(s) 232, 265
EclXI CGGCCG 2 cut(s) 135, 334
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 699
Eco52I CGGCCG 2 cut(s) 135, 334
Eco88I CYCGRG 1 cut(s) 127
EcoO109I RGGNCCY 2 cut(s) 329, 699
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 145, 245
EcoT38I GRGCYC 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
FaiI YATR 6 cut(s) 429, 476, 515, 717, 849, 927
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 685
FauI CCCGC 2 cut(s) 239, 475
FblI GTMKAC 1 cut(s) 587
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 92
FspBI CTAG 3 cut(s) 695, 830, 890
GlaI GCGC 6 cut(s) 65, 188, 206, 263, 366, 415
GsuI CTGGAG 1 cut(s) 617
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 5 cut(s) 70, 137, 330, 336, 773
HapII CCGG 7 cut(s) 134, 138, 312, 333, 557, 630, 757
HgaI GACGC 4 cut(s) 331, 598, 615, 676
HhaI GCGC 6 cut(s) 66, 189, 207, 264, 367, 416
Hin1I GRCGYC 3 cut(s) 414, 590, 626
Hin6I GCGC 6 cut(s) 64, 187, 205, 262, 365, 414
HinP1I GCGC 6 cut(s) 64, 187, 205, 262, 365, 414
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HinfI GANTC 7 cut(s) 17, 130, 191, 281, 541, 784, 855
HpaII CCGG 7 cut(s) 134, 138, 312, 333, 557, 630, 757
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 45, 577, 588
Hpy188I TCNGA 6 cut(s) 16, 22, 286, 675, 789, 860
Hpy188III TCNNGA 9 cut(s) 223, 319, 448, 463, 538, 630, 737, 757, 807
Hpy8I GTNNAC 3 cut(s) 45, 577, 588
HpyCH4III ACNGT 2 cut(s) 535, 688
HpyCH4IV ACGT 5 cut(s) 81, 105, 579, 584, 791
HpyCH4V TGCA 3 cut(s) 4, 85, 259
HpyF10VI GCNNNNNNNGC 8 cut(s) 46, 61, 67, 256, 336, 422, 598, 891
HpyF3I CTNAG 2 cut(s) 211, 875
HpySE526I ACGT 5 cut(s) 81, 105, 579, 584, 791
Hsp92I GRCGYC 3 cut(s) 414, 590, 626
HspAI GCGC 6 cut(s) 64, 187, 205, 262, 365, 414
KasI GGCGCC 1 cut(s) 413
KflI GGGWCCC 1 cut(s) 699
Kpn2I TCCGGA 2 cut(s) 629, 756
Kzo9I GATC 2 cut(s) 56, 402
LmnI GCTCC 3 cut(s) 37, 486, 598
Lsp1109I GCAGC 5 cut(s) 243, 246, 271, 351, 354
LweI GCATC 2 cut(s) 679, 851
MaeI CTAG 3 cut(s) 695, 830, 890
MaeII ACGT 5 cut(s) 81, 105, 579, 584, 791
MaeIII GTNAC 3 cut(s) 25, 580, 868
MalI GATC 2 cut(s) 58, 404
MboI GATC 2 cut(s) 56, 402
MboII GAAGA 4 cut(s) 124, 290, 376, 676
MhlI GDGCHC 2 cut(s) 92, 153
MluCI AATT 3 cut(s) 526, 904, 913
Mly113I GGCGCC 1 cut(s) 414
MlyI GAGTC 2 cut(s) 139, 200
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 9 cut(s) 16, 60, 205, 226, 248, 262, 320, 795, 872
MroI TCCGGA 2 cut(s) 629, 756
MspA1I CMGCKG 2 cut(s) 595, 781
MspI CCGG 7 cut(s) 134, 138, 312, 333, 557, 630, 757
MspR9I CCNGG 4 cut(s) 139, 147, 247, 333
MvaI CCWGG 2 cut(s) 147, 247
MvnI CGCG 8 cut(s) 8, 55, 64, 187, 189, 205, 264, 365
MwoI GCNNNNNNNGC 8 cut(s) 46, 61, 67, 256, 336, 422, 598, 891
NarI GGCGCC 1 cut(s) 414
NciI CCSGG 2 cut(s) 139, 333
NdeII GATC 2 cut(s) 56, 402
NlaIV GGNNCC 6 cut(s) 152, 331, 415, 504, 700, 701
NmuCI GTSAC 3 cut(s) 25, 580, 868
PaeR7I CTCGAG 1 cut(s) 127
PcsI WCGNNNNNNNCGW 7 cut(s) 26, 125, 282, 294, 297, 503, 527
PfeI GAWTC 5 cut(s) 17, 281, 541, 784, 855
Pfl23II CGTACG 1 cut(s) 120
PflMI CCANNNNNTGG 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 311
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 2 cut(s) 138, 199
PluTI GGCGCC 1 cut(s) 417
PpsI GAGTC 2 cut(s) 138, 199
Ppu21I YACGTR 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 699
Psp5II RGGWCCY 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 145, 245
PspGI CCWGG 2 cut(s) 145, 245
PspLI CGTACG 1 cut(s) 120
PspN4I GGNNCC 6 cut(s) 152, 331, 415, 504, 700, 701
PspPI GGNCC 2 cut(s) 329, 699
PspPPI RGGWCCY 1 cut(s) 699
PspXI VCTCGAGB 1 cut(s) 127
PstI CTGCAG 1 cut(s) 261
PvuI CGATCG 1 cut(s) 59
RgaI GCGATCGC 1 cut(s) 59
RsaI GTAC 3 cut(s) 122, 353, 381
RsaNI GTAC 3 cut(s) 121, 352, 380
SalI GTCGAC 1 cut(s) 586
Sau3AI GATC 2 cut(s) 56, 402
Sau96I GGNCC 2 cut(s) 329, 699
SchI GAGTC 2 cut(s) 139, 200
ScrFI CCNGG 4 cut(s) 139, 147, 247, 333
SduI GDGCHC 2 cut(s) 92, 153
SfaAI GCGATCGC 1 cut(s) 59
SfaNI GCATC 2 cut(s) 679, 851
SfcI CTRYAG 1 cut(s) 257
SfoI GGCGCC 1 cut(s) 415
Sfr274I CTCGAG 1 cut(s) 127
SgfI GCGATCGC 1 cut(s) 59
SgrDI CGTCGACG 1 cut(s) 586
SinI GGWCC 1 cut(s) 699
SlaI CTCGAG 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 127, 221
SmoI CTYRAG 2 cut(s) 127, 221
SpeI ACTAGT 1 cut(s) 829
Sse9I AATT 3 cut(s) 526, 904, 913
SspDI GGCGCC 1 cut(s) 413
SspMI CTAG 3 cut(s) 695, 830, 890
StyD4I CCNGG 4 cut(s) 137, 145, 245, 331
TaaI ACNGT 2 cut(s) 535, 688
TaiI ACGT 5 cut(s) 84, 108, 582, 587, 794
TaqI TCGA 6 cut(s) 95, 128, 276, 462, 530, 587
TasI AATT 3 cut(s) 526, 904, 913
TatI WGTACW 2 cut(s) 351, 379
TauI GCSGC 6 cut(s) 64, 267, 339, 436, 595, 781
TfiI GAWTC 5 cut(s) 17, 281, 541, 784, 855
TscAI CASTG 2 cut(s) 170, 693
TseFI GTSAC 3 cut(s) 25, 580, 868
TseI GCWGC 5 cut(s) 234, 256, 259, 339, 367
Tsp45I GTSAC 3 cut(s) 25, 580, 868
TspDTI ATGAA 1 cut(s) 533
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 2 cut(s) 170, 693
Van91I CCANNNNNTGG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 699
XapI RAATTY 2 cut(s) 526, 913
XhoI CTCGAG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 587
XspI CTAG 3 cut(s) 695, 830, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.