Rroxscaffold_7G00188800

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008796
Physical Location & Seq
Reverse (-)
28544289 .. 28546711
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188800.1

Sequence Viewer

Length: 915 bp
ATGCACGCCAAGTCCGACTCCGAGGTGACCAGCGTGGAGCAGTCCACTCCTCCGCGGTCGCCGCGGCGGCCCATCTACTACGTCCAAAGCCCGTCCAACCACGACGTCGAGAAGATGTCGTACGGCTCAAGCCCAATGGGCTCTCCCGGCCACCCTTACTACCACTGCTCCCCCATCCACCACTCCCGCGAGTCCTCCACCTCCCGCTTCTCCGCCTCCCTCAAGAACCCCCGCAACCTCTCCGCCTGGAAGCGCCTCCACCGCCCCGACGACCGCGGCGACGACTCCGACGAAGATGACCAGAACGACGCCGCGCCCTCCCCCGGCCGCAACGTCAGGCTCTACCTCTGCTTCGCGCTCTTGTTCTTCGTCCTCTTCACCCTCTTCTCCCTCATCCTCTGGGGCGCCAGCAAGTCCTACAAGCCCCAGGTCGTCGTCAAGAATATTGTGTTCGAGAGCTTCAACATACAGGCGGGGGTGGACAACTCCGGGGTGGCGACGGACATGCTGTCGTTGAATTCAACGGTCAGGATTCACTACAGGAATCCCGGGACATTCTTCGGCGTCCACGTCACGTCCACTCCTCTCGAGCTCCACTATTTCCAGCTCAAGGTCGCCTCCGGTCAGATAAAAAGGTTCTACCAAGCAAGGAAGACTCATCGGACAATATCGACAGTGGTGCTAGGGTCTCAAGTGGCTCTCTACGGTGGAATTTCTGTTCTTGATGTTAGTAGAGGGAATCACGAGAAGGTGGCAGTGCCACTGAATCTGACATTCGTTGTGCGTTCCAGAGCCTACATTTTGGGAAAACTAGTGAAGTCCAAGTTTTATAAGAGAATTAGATGCTCTGTCACTCTGAGGGGCAGCAATCTAGGCAAGCGTTCTAATTTGACGGAATCTTGCGTCTATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

304

Amino Acids

34.14

Weight (kDa)

9.84

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AatII GACGTC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 404
AccII CGCG 6 cut(s) 55, 64, 189, 276, 314, 356
AcoI YGGCCR 2 cut(s) 148, 325
AcsI RAATTY 2 cut(s) 517, 711
AcyI GRCGYC 4 cut(s) 105, 309, 405, 564
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 323, 610
AgsI TTSAA 3 cut(s) 463, 517, 522
AhdI GACNNNNNGTC 1 cut(s) 508
AhlI ACTAGT 1 cut(s) 811
AjiI CACGTC 2 cut(s) 571, 576
AjnI CCWGG 2 cut(s) 245, 426
AloI GAACNNNNNNTCC 2 cut(s) 702, 734
AluBI AGCT 3 cut(s) 459, 592, 607
AluI AGCT 3 cut(s) 459, 592, 607
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 1 cut(s) 693
Ama87I CYCGRG 2 cut(s) 548, 587
AoxI GGCC 3 cut(s) 68, 148, 325
ApeKI GCWGC 1 cut(s) 864
ApoI RAATTY 2 cut(s) 517, 711
AspLEI GCGC 4 cut(s) 255, 316, 358, 407
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 5 cut(s) 147, 324, 490, 549, 550
AsuHPI GGTGA 2 cut(s) 37, 370
AvaI CYCGRG 2 cut(s) 548, 587
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 2 cut(s) 143, 594
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BauI CACGAG 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 876
BccI CCATC 2 cut(s) 80, 182
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 4 cut(s) 487, 521, 661, 695
BciT130I CCWGG 2 cut(s) 247, 428
BcnI CCSGG 5 cut(s) 147, 324, 490, 549, 550
BcoDI GTCTC 1 cut(s) 693
BcuI ACTAGT 1 cut(s) 811
BfaI CTAG 3 cut(s) 683, 812, 872
BfmI CTRYAG 1 cut(s) 538
BfoI RGCGCY 2 cut(s) 256, 408
BglI GCCNNNNNGGC 2 cut(s) 67, 138
BisI GCNGC 7 cut(s) 62, 65, 68, 277, 312, 328, 865
BlsI GCNGC 7 cut(s) 63, 66, 69, 278, 313, 329, 866
Bme1390I CCNGG 7 cut(s) 147, 247, 324, 428, 490, 549, 550
BmeRI GACNNNNNGTC 1 cut(s) 508
BmeT110I CYCGRG 2 cut(s) 548, 587
BmgBI CACGTC 2 cut(s) 571, 576
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 7 cut(s) 147, 247, 324, 428, 490, 549, 550
BmsI GCATC 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 659
BpuEI CTTGAG 4 cut(s) 112, 206, 593, 675
BpuMI CCSGG 5 cut(s) 147, 324, 490, 549, 550
BsaHI GRCGYC 4 cut(s) 105, 309, 405, 564
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 8 cut(s) 21, 53, 62, 274, 322, 426, 489, 548
BsaWI WCCGGW 1 cut(s) 620
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 565, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 610
BseBI CCWGG 2 cut(s) 247, 428
BseDI CCNNGG 8 cut(s) 21, 53, 62, 274, 322, 426, 489, 548
BseGI GGATG 2 cut(s) 174, 393
BseLI CCNNNNNNNGG 2 cut(s) 323, 610
BseMII CTCAG 1 cut(s) 848
BseRI GAGGAG 2 cut(s) 39, 573
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 876
Bsh1236I CGCG 6 cut(s) 55, 64, 189, 276, 314, 356
Bsh1285I CGRYCG 3 cut(s) 59, 274, 328
BshFI GGCC 3 cut(s) 70, 150, 327
BshNI GGYRCC 1 cut(s) 404
BsiEI CGRYCG 3 cut(s) 59, 274, 328
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 2 cut(s) 548, 587
BsiSI CCGG 5 cut(s) 147, 324, 489, 549, 621
BsiWI CGTACG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 323, 610
BsmAI GTCTC 1 cut(s) 693
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 3 cut(s) 70, 150, 327
Bso31I GGTCTC 1 cut(s) 693
BsoBI CYCGRG 2 cut(s) 548, 587
Bsp1286I GDGCHC 2 cut(s) 143, 594
BspANI GGCC 3 cut(s) 70, 150, 327
BspCNI CTCAG 1 cut(s) 849
BspFNI CGCG 6 cut(s) 55, 64, 189, 276, 314, 356
BspLI GGNNCC 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 693
BssECI CCNNGG 8 cut(s) 21, 53, 62, 274, 322, 426, 489, 548
BssNI GRCGYC 4 cut(s) 105, 309, 405, 564
BssSI CACGAG 1 cut(s) 743
Bst2BI CACGAG 1 cut(s) 743
Bst2UI CCWGG 2 cut(s) 247, 428
Bst4CI ACNGT 3 cut(s) 526, 676, 707
Bst6I CTCTTC 2 cut(s) 380, 389
BstACI GRCGYC 4 cut(s) 105, 309, 405, 564
BstC8I GCNNGC 3 cut(s) 6, 409, 878
BstDEI CTNAG 1 cut(s) 857
BstDSI CCRYGG 3 cut(s) 53, 62, 274
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 174, 393
BstFNI CGCG 6 cut(s) 55, 64, 189, 276, 314, 356
BstH2I RGCGCY 2 cut(s) 256, 408
BstHHI GCGC 4 cut(s) 255, 316, 358, 407
BstMAI GTCTC 1 cut(s) 693
BstMCI CGRYCG 3 cut(s) 59, 274, 328
BstMWI GCNNNNNNNGC 6 cut(s) 61, 67, 138, 147, 261, 873
BstNI CCWGG 2 cut(s) 247, 428
BstNSI RCATGY 1 cut(s) 508
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 7 cut(s) 145, 245, 322, 426, 488, 547, 548
BstSFI CTRYAG 1 cut(s) 538
BstUI CGCG 6 cut(s) 55, 64, 189, 276, 314, 356
BstV1I GCAGC 1 cut(s) 876
BstV2I GAAGAC 1 cut(s) 659
BstZI CGGCCG 1 cut(s) 325
BsuRI GGCC 3 cut(s) 70, 150, 327
BtgI CCRYGG 3 cut(s) 53, 62, 274
BtrI CACGTC 2 cut(s) 571, 576
BtsCI GGATG 2 cut(s) 174, 393
BtsI GCAGTG 2 cut(s) 163, 762
BtsIMutI CAGTG 5 cut(s) 163, 681, 761, 762, 910
Cac8I GCNNGC 3 cut(s) 6, 409, 878
CfoI GCGC 4 cut(s) 255, 316, 358, 407
Cfr13I GGNCC 1 cut(s) 69
Cfr42I CCGCGG 3 cut(s) 56, 65, 277
Cfr9I CCCGGG 1 cut(s) 548
CseI GACGC 3 cut(s) 317, 553, 892
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 505
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 857
DinI GGCGCC 1 cut(s) 406
DriI GACNNNNNGTC 1 cut(s) 508
EaeI YGGCCR 2 cut(s) 148, 325
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 380, 389
Eam1105I GACNNNNNGTC 1 cut(s) 508
EarI CTCTTC 2 cut(s) 380, 389
EciI GGCGGA 2 cut(s) 202, 232
Ecl136II GAGCTC 1 cut(s) 592
EclXI CGGCCG 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 143, 594
Eco31I GGTCTC 1 cut(s) 693
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 592
Eco88I CYCGRG 2 cut(s) 548, 587
Eco91I GGTNACC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 592
EcoO65I GGTNACC 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 245, 426
EcoT38I GRGCYC 2 cut(s) 143, 594
EgeI GGCGCC 1 cut(s) 406
EheI GGCGCC 1 cut(s) 406
FaeI CATG 1 cut(s) 508
FaiI YATR 3 cut(s) 467, 506, 831
FaqI GGGAC 1 cut(s) 565
FatI CATG 1 cut(s) 504
FauI CCCGC 4 cut(s) 194, 212, 239, 466
Fnu4HI GCNGC 7 cut(s) 62, 65, 68, 277, 312, 328, 865
FokI GGATG 2 cut(s) 161, 380
FriOI GRGCYC 2 cut(s) 143, 594
Fsp4HI GCNGC 7 cut(s) 62, 65, 68, 277, 312, 328, 865
FspBI CTAG 3 cut(s) 683, 812, 872
GlaI GCGC 4 cut(s) 254, 315, 357, 406
GluI GCNGC 7 cut(s) 62, 65, 68, 277, 312, 328, 865
HaeII RGCGCY 2 cut(s) 256, 408
HaeIII GGCC 3 cut(s) 70, 150, 327
HapII CCGG 5 cut(s) 147, 324, 489, 549, 621
HgaI GACGC 3 cut(s) 317, 553, 892
HhaI GCGC 4 cut(s) 255, 316, 358, 407
Hin1I GRCGYC 4 cut(s) 105, 309, 405, 564
Hin1II CATG 1 cut(s) 508
Hin6I GCGC 4 cut(s) 253, 314, 356, 405
HinP1I GCGC 4 cut(s) 253, 314, 356, 405
HinfI GANTC 9 cut(s) 17, 191, 284, 532, 544, 655, 739, 766, 896
HpaII CCGG 5 cut(s) 147, 324, 489, 549, 621
HphI GGTGA 2 cut(s) 37, 370
Hpy166II GTNNAC 4 cut(s) 45, 481, 568, 579
Hpy188I TCNGA 7 cut(s) 16, 22, 289, 627, 663, 771, 858
Hpy188III TCNNGA 9 cut(s) 109, 223, 439, 454, 529, 587, 722, 743, 789
Hpy8I GTNNAC 4 cut(s) 45, 481, 568, 579
Hpy99I CGWCG 8 cut(s) 107, 110, 272, 284, 293, 311, 437, 502
HpyAV CCTTC 1 cut(s) 742
HpyCH4III ACNGT 3 cut(s) 526, 676, 707
HpyCH4IV ACGT 5 cut(s) 81, 105, 333, 570, 575
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 67, 138, 147, 261, 873
HpyF3I CTNAG 1 cut(s) 857
HpySE526I ACGT 5 cut(s) 81, 105, 333, 570, 575
Hsp92I GRCGYC 4 cut(s) 105, 309, 405, 564
Hsp92II CATG 1 cut(s) 508
HspAI GCGC 4 cut(s) 253, 314, 356, 405
KasI GGCGCC 1 cut(s) 404
KspI CCGCGG 3 cut(s) 56, 65, 277
LmnI GCTCC 3 cut(s) 37, 173, 597
Lsp1109I GCAGC 1 cut(s) 876
LweI GCATC 1 cut(s) 833
MaeI CTAG 3 cut(s) 683, 812, 872
MaeII ACGT 5 cut(s) 81, 105, 333, 570, 575
MaeIII GTNAC 3 cut(s) 25, 571, 850
MboII GAAGA 7 cut(s) 124, 305, 358, 367, 376, 550, 664
MhlI GDGCHC 2 cut(s) 143, 594
MluCI AATT 4 cut(s) 517, 711, 837, 886
Mly113I GGCGCC 1 cut(s) 405
MlyI GAGTC 4 cut(s) 11, 200, 278, 649
MmeI TCCRAC 3 cut(s) 39, 120, 312
MspA1I CMGCKG 3 cut(s) 55, 64, 276
MspI CCGG 5 cut(s) 147, 324, 489, 549, 621
MspR9I CCNGG 7 cut(s) 147, 247, 324, 428, 490, 549, 550
MvaI CCWGG 2 cut(s) 247, 428
MvnI CGCG 6 cut(s) 55, 64, 189, 276, 314, 356
MwoI GCNNNNNNNGC 6 cut(s) 61, 67, 138, 147, 261, 873
NarI GGCGCC 1 cut(s) 405
NciI CCSGG 5 cut(s) 147, 324, 490, 549, 550
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 25, 571, 850
NspI RCATGY 1 cut(s) 508
PaeR7I CTCGAG 1 cut(s) 587
PcsI WCGNNNNNNNCGW 4 cut(s) 12, 276, 288, 567
PfeI GAWTC 5 cut(s) 532, 544, 739, 766, 896
Pfl23II CGTACG 1 cut(s) 120
PkrI GCNGC 7 cut(s) 63, 66, 69, 278, 313, 329, 866
PleI GAGTC 4 cut(s) 11, 199, 278, 649
PluTI GGCGCC 1 cut(s) 408
PpsI GAGTC 4 cut(s) 11, 199, 278, 649
PsiI TTATAA 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 245, 426
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 245, 426
PspLI CGTACG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SacI GAGCTC 1 cut(s) 594
SacII CCGCGG 3 cut(s) 56, 65, 277
SatI GCNGC 7 cut(s) 62, 65, 68, 277, 312, 328, 865
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 4 cut(s) 11, 200, 278, 649
ScrFI CCNGG 7 cut(s) 147, 247, 324, 428, 490, 549, 550
SduI GDGCHC 2 cut(s) 143, 594
SfaNI GCATC 1 cut(s) 833
SfcI CTRYAG 1 cut(s) 538
SfoI GGCGCC 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 587
Sfr303I CCGCGG 3 cut(s) 56, 65, 277
SgrBI CCGCGG 3 cut(s) 56, 65, 277
SlaI CTCGAG 1 cut(s) 587
SmaI CCCGGG 1 cut(s) 550
SmlI CTYRAG 5 cut(s) 127, 221, 587, 608, 690
SmoI CTYRAG 5 cut(s) 127, 221, 587, 608, 690
SpeI ACTAGT 1 cut(s) 811
Sse9I AATT 4 cut(s) 517, 711, 837, 886
SspDI GGCGCC 1 cut(s) 404
SspI AATATT 1 cut(s) 445
SspMI CTAG 3 cut(s) 683, 812, 872
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 7 cut(s) 145, 245, 322, 426, 488, 547, 548
TaaI ACNGT 3 cut(s) 526, 676, 707
TaiI ACGT 5 cut(s) 84, 108, 336, 573, 578
TaqI TCGA 4 cut(s) 108, 453, 588, 671
TasI AATT 4 cut(s) 517, 711, 837, 886
TauI GCSGC 6 cut(s) 64, 67, 70, 279, 314, 330
TfiI GAWTC 5 cut(s) 532, 544, 739, 766, 896
TscAI CASTG 4 cut(s) 170, 681, 762, 768
TseFI GTSAC 3 cut(s) 25, 571, 850
TseI GCWGC 1 cut(s) 864
Tsp45I GTSAC 3 cut(s) 25, 571, 850
TspGWI ACGGA 2 cut(s) 515, 908
TspMI CCCGGG 1 cut(s) 548
TspRI CASTG 4 cut(s) 170, 681, 762, 768
XapI RAATTY 2 cut(s) 517, 711
XceI RCATGY 1 cut(s) 508
XhoI CTCGAG 1 cut(s) 587
XmaI CCCGGG 1 cut(s) 548
XspI CTAG 3 cut(s) 683, 812, 872
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.