Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008796

Physical Location & Seq

Genomic Coordinates Forward (+)

13986972 .. 13989877

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCACGCCAAGTCGGACTCGGAGGTGACGATGAGCGTGGAGCAGTCGACTCCTCCGCGGTCGCCGTCGCGGCGGCCCATCTACTACGTCCAAAGCCCGTCCAACCACGACGCCGAGAAGATGTCGTACGGCTCAAGCCCAATGGGCTCCCCCGGCCACCCTGCTTACTACCACTGCTCCCCCATCCACCACTCTCGCGAGTCCTCCACCTCCCGCTACTCCGCCTCCCTCAAAAACCCCCGAAACTCCGCCTGGAAGCGCCTCCACCGCCCCGACGCCGACTCCGACACCGACCCCGACGACCAAAACGACACCGTCTCCCCCGGCCGCAACGTCAGGCTCTACCTCTGCTTTCTGCTCTTGTTCGTCTTCCTCTTCACCCTCTTCTCCCTCATCCTCTGGGGCGCCAGCAAGTCCTACAAGCCCCACGTCCTCGTCAAGAATATTGTGTTCGAGAGCTTCAACATACAGGCGGGGGTGGACAACTCGGGGCTGGCGACGGACATGTTGTCGCTGAACTCGACGGTCAGGATTCACTACAGGAACCCCGGGACATTCTTCGGCGTCCACGTCACGTCCACTCCTCTCGAGCTCCACTATTACCAGCTCAAGGTCGCCTCCGGTCAGATTGAAAAGTTTTACCAAGCAAGGAAGACTCATCGGACAATATTGACAGTGGTGCGAGGGTCTCAAGTGTCTCTCTATGGTGGAATTTCAGCTCTTGATGTTAGAGGCAATCACGAGAAGGTGGCAGTGCCGCTGAATCTGACATTCGTTGTGCGTTCCAGAGCCTACATTTTGGGAAAACTAGTGAAGTCCAAGTTTTATAGGAGAATTAGATGCTCTGTCACTCTGAGGGGAAGCAATCTAGGCAAGCATTCTAATTTGACGGAATCTTGTGTCTATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

304

Amino Acids

34.13

Weight (kDa)

9.77

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41990
fragaria_vesca	FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020
malus_domestica	MD05G1129000.v1.1 MD10G1132300.v1.1
prunus_persica	Prupe.8G173100_v2.0.a1 Prupe.8G173100_v2.0.a1
pyrus_communis	pycom05g12560 pycom10g11350
rosa_chinensis	RchiOBHm_Chr6g0279601
rosa_laevigata	RLG00000013134
rosa_multiflora	Rmu_sc0004010.1_g000004 Rmu_sc0004649.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188800
rosa_rugosa	Rorug06G0126400
rosa_samantha	Rh6AG234600 Rh6BG239100 Rh6CG241100 Rh6DG232600
rosa_wichuraiana	Rw6G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	3 cut(s)	58, 70, 198
AcoI	YGGCCR	2 cut(s)	154, 325
AcsI	RAATTY	1 cut(s)	711
AcyI	GRCGYC	4 cut(s)	111, 276, 405, 564
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	610
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	2 cut(s)	463, 632
AhdI	GACNNNNNGTC	1 cut(s)	508
AhlI	ACTAGT	1 cut(s)	808
AjiI	CACGTC	3 cut(s)	430, 571, 576
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	4 cut(s)	459, 592, 607, 719
AluI	AGCT	4 cut(s)	459, 592, 607, 719
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	3 cut(s)	322, 693, 702
Ama87I	CYCGRG	3 cut(s)	487, 548, 587
AoxI	GGCC	3 cut(s)	74, 154, 325
ApoI	RAATTY	1 cut(s)	711
AspLEI	GCGC	2 cut(s)	261, 407
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	4 cut(s)	153, 324, 549, 550
AsuHPI	GGTGA	2 cut(s)	37, 370
AvaI	CYCGRG	3 cut(s)	487, 548, 587
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	149, 594
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BauI	CACGAG	1 cut(s)	740
BbsI	GAAGAC	2 cut(s)	361, 659
Bbv12I	GWGCWC	1 cut(s)	594
BccI	CCATC	2 cut(s)	86, 191
BceAI	ACGGC	2 cut(s)	49, 145
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	4 cut(s)	153, 324, 549, 550
BcoDI	GTCTC	3 cut(s)	322, 693, 702
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	2 cut(s)	809, 869
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	2 cut(s)	262, 408
BglI	GCCNNNNNGGC	2 cut(s)	70, 144
BisI	GCNGC	4 cut(s)	71, 74, 328, 758
BlsI	GCNGC	4 cut(s)	72, 75, 329, 759
Bme1390I	CCNGG	5 cut(s)	153, 253, 324, 549, 550
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmeT110I	CYCGRG	3 cut(s)	487, 548, 587
BmgBI	CACGTC	3 cut(s)	430, 571, 576
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	148, 406, 545
BmrFI	CCNGG	5 cut(s)	153, 253, 324, 549, 550
BmsI	GCATC	1 cut(s)	830
BpiI	GAAGAC	2 cut(s)	361, 659
BpuEI	CTTGAG	3 cut(s)	118, 593, 675
BpuMI	CCSGG	4 cut(s)	153, 324, 549, 550
BsaHI	GRCGYC	4 cut(s)	111, 276, 405, 564
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	5 cut(s)	56, 151, 322, 547, 548
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	5 cut(s)	56, 151, 322, 547, 548
BseGI	GGATG	2 cut(s)	183, 393
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMII	CTCAG	1 cut(s)	845
BseRI	GAGGAG	2 cut(s)	42, 573
BseX3I	CGGCCG	1 cut(s)	325
Bsh1236I	CGCG	3 cut(s)	58, 70, 198
Bsh1285I	CGRYCG	2 cut(s)	62, 328
BshFI	GGCC	3 cut(s)	76, 156, 327
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	62, 328
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	3 cut(s)	487, 548, 587
BsiSI	CCGG	4 cut(s)	153, 324, 549, 621
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmAI	GTCTC	3 cut(s)	322, 693, 702
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	76, 156, 327
Bso31I	GGTCTC	1 cut(s)	693
BsoBI	CYCGRG	3 cut(s)	487, 548, 587
Bsp1286I	GDGCHC	2 cut(s)	149, 594
Bsp68I	TCGCGA	1 cut(s)	198
BspANI	GGCC	3 cut(s)	76, 156, 327
BspCNI	CTCAG	1 cut(s)	846
BspFNI	CGCG	3 cut(s)	58, 70, 198
BspLI	GGNNCC	3 cut(s)	148, 406, 545
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	693
BssECI	CCNNGG	5 cut(s)	56, 151, 322, 547, 548
BssNI	GRCGYC	4 cut(s)	111, 276, 405, 564
BssSI	CACGAG	1 cut(s)	740
Bst2BI	CACGAG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	316, 526, 676
Bst6I	CTCTTC	2 cut(s)	380, 389
BstACI	GRCGYC	4 cut(s)	111, 276, 405, 564
BstC8I	GCNNGC	4 cut(s)	6, 409, 495, 875
BstDEI	CTNAG	1 cut(s)	854
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	183, 393
BstFNI	CGCG	3 cut(s)	58, 70, 198
BstH2I	RGCGCY	2 cut(s)	262, 408
BstHHI	GCGC	2 cut(s)	261, 407
BstMAI	GTCTC	3 cut(s)	322, 693, 702
BstMCI	CGRYCG	2 cut(s)	62, 328
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 144, 153, 267, 870
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	5 cut(s)	151, 251, 322, 547, 548
BstSFI	CTRYAG	1 cut(s)	538
BstUI	CGCG	3 cut(s)	58, 70, 198
BstV2I	GAAGAC	2 cut(s)	361, 659
BstZI	CGGCCG	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	76, 156, 327
BtgI	CCRYGG	1 cut(s)	56
BtrI	CACGTC	3 cut(s)	430, 571, 576
BtsCI	GGATG	2 cut(s)	183, 393
BtsI	GCAGTG	2 cut(s)	172, 759
BtsIMutI	CAGTG	4 cut(s)	172, 681, 759, 907
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	4 cut(s)	6, 409, 495, 875
CfoI	GCGC	2 cut(s)	261, 407
Cfr13I	GGNCC	1 cut(s)	75
Cfr42I	CCGCGG	1 cut(s)	59
Cfr9I	CCCGGG	1 cut(s)	548
CseI	GACGC	3 cut(s)	119, 284, 553
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	854
DinI	GGCGCC	1 cut(s)	406
DriI	GACNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	2 cut(s)	154, 325
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	380, 389
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	2 cut(s)	380, 389
EciI	GGCGGA	2 cut(s)	211, 238
Ecl136II	GAGCTC	1 cut(s)	592
EclXI	CGGCCG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	149, 594
Eco31I	GGTCTC	1 cut(s)	693
Eco52I	CGGCCG	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	592
Eco88I	CYCGRG	3 cut(s)	487, 548, 587
EcoICRI	GAGCTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	251
EcoT38I	GRGCYC	2 cut(s)	149, 594
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	508
FaiI	YATR	4 cut(s)	467, 506, 705, 828
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	1 cut(s)	504
FauI	CCCGC	2 cut(s)	221, 466
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	71, 74, 328, 758
FokI	GGATG	2 cut(s)	170, 380
FriOI	GRGCYC	2 cut(s)	149, 594
Fsp4HI	GCNGC	4 cut(s)	71, 74, 328, 758
FspBI	CTAG	2 cut(s)	809, 869
GlaI	GCGC	2 cut(s)	260, 406
GluI	GCNGC	4 cut(s)	71, 74, 328, 758
HaeII	RGCGCY	2 cut(s)	262, 408
HaeIII	GGCC	3 cut(s)	76, 156, 327
HapII	CCGG	4 cut(s)	153, 324, 549, 621
HgaI	GACGC	3 cut(s)	119, 284, 553
HhaI	GCGC	2 cut(s)	261, 407
Hin1I	GRCGYC	4 cut(s)	111, 276, 405, 564
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	259, 405
HinP1I	GCGC	2 cut(s)	259, 405
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	8 cut(s)	17, 49, 200, 281, 532, 655, 763, 893
HpaII	CCGG	4 cut(s)	153, 324, 549, 621
HphI	GGTGA	2 cut(s)	37, 370
Hpy166II	GTNNAC	4 cut(s)	48, 481, 568, 579
Hpy188I	TCNGA	7 cut(s)	16, 22, 286, 627, 663, 768, 855
Hpy188III	TCNNGA	8 cut(s)	197, 439, 454, 529, 587, 722, 740, 786
Hpy8I	GTNNAC	4 cut(s)	48, 481, 568, 579
Hpy99I	CGWCG	6 cut(s)	70, 113, 278, 302, 502, 526
HpyAV	CCTTC	1 cut(s)	739
HpyCH4III	ACNGT	3 cut(s)	316, 526, 676
HpyCH4IV	ACGT	5 cut(s)	87, 333, 429, 570, 575
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 144, 153, 267, 870
HpyF3I	CTNAG	1 cut(s)	854
HpySE526I	ACGT	5 cut(s)	87, 333, 429, 570, 575
Hsp92I	GRCGYC	4 cut(s)	111, 276, 405, 564
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	259, 405
KasI	GGCGCC	1 cut(s)	404
KspI	CCGCGG	1 cut(s)	59
LmnI	GCTCC	4 cut(s)	40, 152, 182, 597
LweI	GCATC	1 cut(s)	830
MaeI	CTAG	2 cut(s)	809, 869
MaeII	ACGT	5 cut(s)	87, 333, 429, 570, 575
MaeIII	GTNAC	3 cut(s)	25, 571, 847
MboII	GAAGA	6 cut(s)	130, 361, 367, 376, 550, 664
MhlI	GDGCHC	2 cut(s)	149, 594
MluCI	AATT	3 cut(s)	711, 834, 883
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	5 cut(s)	11, 43, 209, 275, 649
MmeI	TCCRAC	2 cut(s)	126, 309
MspA1I	CMGCKG	2 cut(s)	58, 760
MspI	CCGG	4 cut(s)	153, 324, 549, 621
MspR9I	CCNGG	5 cut(s)	153, 253, 324, 549, 550
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	3 cut(s)	58, 70, 198
MwoI	GCNNNNNNNGC	5 cut(s)	70, 144, 153, 267, 870
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	4 cut(s)	153, 324, 549, 550
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	3 cut(s)	148, 406, 545
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	3 cut(s)	25, 571, 847
NruI	TCGCGA	1 cut(s)	198
NspI	RCATGY	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	587
PciI	ACATGT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	6 cut(s)	26, 282, 306, 494, 518, 567
PctI	GAATGC	1 cut(s)	877
PfeI	GAWTC	3 cut(s)	532, 763, 893
Pfl23II	CGTACG	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	72, 75, 329, 759
PleI	GAGTC	5 cut(s)	11, 43, 208, 275, 649
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	5 cut(s)	11, 43, 208, 275, 649
PscI	ACATGT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	148, 406, 545
PspPI	GGNCC	1 cut(s)	75
PsyI	GACNNNGTC	1 cut(s)	314
RruI	TCGCGA	1 cut(s)	198
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	594
SacII	CCGCGG	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	46
SatI	GCNGC	4 cut(s)	71, 74, 328, 758
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	5 cut(s)	11, 43, 209, 275, 649
ScrFI	CCNGG	5 cut(s)	153, 253, 324, 549, 550
SduI	GDGCHC	2 cut(s)	149, 594
SfaNI	GCATC	1 cut(s)	830
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	587
Sfr303I	CCGCGG	1 cut(s)	59
SgrBI	CCGCGG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	587
SmaI	CCCGGG	1 cut(s)	550
SmlI	CTYRAG	4 cut(s)	133, 587, 608, 690
SmoI	CTYRAG	4 cut(s)	133, 587, 608, 690
SpeI	ACTAGT	1 cut(s)	808
Sse9I	AATT	3 cut(s)	711, 834, 883
SspDI	GGCGCC	1 cut(s)	404
SspI	AATATT	2 cut(s)	445, 669
SspMI	CTAG	2 cut(s)	809, 869
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	5 cut(s)	151, 251, 322, 547, 548
TaaI	ACNGT	3 cut(s)	316, 526, 676
TaiI	ACGT	5 cut(s)	90, 336, 432, 573, 578
TaqI	TCGA	4 cut(s)	47, 453, 521, 588
TasI	AATT	3 cut(s)	711, 834, 883
TauI	GCSGC	4 cut(s)	73, 76, 330, 760
TfiI	GAWTC	3 cut(s)	532, 763, 893
TscAI	CASTG	3 cut(s)	179, 681, 759
TseFI	GTSAC	3 cut(s)	25, 571, 847
Tsp45I	GTSAC	3 cut(s)	25, 571, 847
TspGWI	ACGGA	2 cut(s)	515, 905
TspMI	CCCGGG	1 cut(s)	548
TspRI	CASTG	3 cut(s)	179, 681, 759
Tth111I	GACNNNGTC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	711
XceI	RCATGY	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	587
XmaI	CCCGGG	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	809, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.