Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008796

Physical Location & Seq

Genomic Coordinates Reverse (-)

26664466 .. 26665768

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCACGCCAAGTCCGACTCCGAGGTGACCAGCGTGGAGCAGTCCACTCCTCCGCGGTCGCCGCGGCGACCCATCTACTACGTCCAAAGCCCGTCCAACCACGACGTCGAGAAGATGTCGTACGGCTCAAGCCCAATGGGCTCTCCCGGCCACCCTTACTACCACTGCTCCCCCATCCACCACTCCCGCGAGTCCTCCACCTCCCGCTTCTCCGCCTCCCTCAAGAACACCCGCAACCTCTCCGCCTGGAAGCGCCTCCACCGCCCCGACGACCACGGCGACGACTCAGACGAAGATGACCAGAACGACGCCGCGCCCTCCCCCGCCCGCAACGTCAGGCTCTACCTCTGCTTCGCGCTCTTGTTCTTCGTCCTCTTCACCCTCTTCTCCCTCATCCTCTGGGGCGCCAGCAAGTCCTACAAGCCCCAGGTCGTCGTCAAGAATATTGTGTTCGAGAGCTTCAACATACAGGCCGGGGTGGACAACTCGGGGGTGGCGACGGACATGCTGTCGTTGAATTCAACGGTCAGGATTCACTACAGGAATCCCGGGACATTCTTCGGCGTCCACGTCACGTCCACCCCTCTCGAGCTCCACTATTTCCAGCTCCAGGTCGCCTCCGGTCAGGTAAACCGTGCCACAGGGGGTAGTGTTGTCATTTCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

223

Amino Acids

24.7

Weight (kDa)

7.88

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41990
fragaria_vesca	FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020
malus_domestica	MD05G1129000.v1.1 MD10G1132300.v1.1
prunus_persica	Prupe.8G173100_v2.0.a1 Prupe.8G173100_v2.0.a1
pyrus_communis	pycom05g12560 pycom10g11350
rosa_chinensis	RchiOBHm_Chr6g0279601
rosa_laevigata	RLG00000013134
rosa_multiflora	Rmu_sc0004010.1_g000004 Rmu_sc0004649.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188800
rosa_rugosa	Rorug06G0126400
rosa_samantha	Rh6AG234600 Rh6BG239100 Rh6CG241100 Rh6DG232600
rosa_wichuraiana	Rw6G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	5 cut(s)	55, 64, 189, 314, 356
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	517
AcyI	GRCGYC	4 cut(s)	105, 309, 405, 564
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	610
AgsI	TTSAA	3 cut(s)	463, 517, 522
AhdI	GACNNNNNGTC	1 cut(s)	508
AjiI	CACGTC	2 cut(s)	571, 576
AjnI	CCWGG	3 cut(s)	245, 426, 609
AluBI	AGCT	3 cut(s)	459, 592, 607
AluI	AGCT	3 cut(s)	459, 592, 607
Alw21I	GWGCWC	1 cut(s)	594
Ama87I	CYCGRG	3 cut(s)	487, 548, 587
AoxI	GGCC	2 cut(s)	148, 471
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	4 cut(s)	255, 316, 358, 407
AsuC2I	CCSGG	4 cut(s)	147, 475, 549, 550
AsuHPI	GGTGA	2 cut(s)	37, 370
AvaI	CYCGRG	3 cut(s)	487, 548, 587
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	143, 594
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
Bbv12I	GWGCWC	1 cut(s)	594
BccI	CCATC	2 cut(s)	80, 182
BceAI	ACGGC	2 cut(s)	139, 292
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	3 cut(s)	247, 428, 611
BcnI	CCSGG	4 cut(s)	147, 475, 549, 550
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	2 cut(s)	256, 408
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	62, 65, 312
BlsI	GCNGC	3 cut(s)	63, 66, 313
Bme1390I	CCNGG	7 cut(s)	147, 247, 428, 475, 549, 550, 611
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmeT110I	CYCGRG	3 cut(s)	487, 548, 587
BmgBI	CACGTC	2 cut(s)	571, 576
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	7 cut(s)	147, 247, 428, 475, 549, 550, 611
BpmI	CTGGAG	1 cut(s)	593
BpuEI	CTTGAG	2 cut(s)	112, 206
BpuMI	CCSGG	4 cut(s)	147, 475, 549, 550
BsaHI	GRCGYC	4 cut(s)	105, 309, 405, 564
BsaJI	CCNNGG	7 cut(s)	21, 53, 62, 274, 426, 474, 548
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
BseBI	CCWGG	3 cut(s)	247, 428, 611
BseDI	CCNNGG	7 cut(s)	21, 53, 62, 274, 426, 474, 548
BseGI	GGATG	2 cut(s)	174, 393
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	39
Bsh1236I	CGCG	5 cut(s)	55, 64, 189, 314, 356
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	150, 473
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	3 cut(s)	487, 548, 587
BsiSI	CCGG	4 cut(s)	147, 474, 549, 621
BsiWI	CGTACG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	2 cut(s)	150, 473
BsoBI	CYCGRG	3 cut(s)	487, 548, 587
Bsp1286I	GDGCHC	2 cut(s)	143, 594
BspANI	GGCC	2 cut(s)	150, 473
BspCNI	CTCAG	1 cut(s)	299
BspFNI	CGCG	5 cut(s)	55, 64, 189, 314, 356
BspLI	GGNNCC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	404
BssECI	CCNNGG	7 cut(s)	21, 53, 62, 274, 426, 474, 548
BssNI	GRCGYC	4 cut(s)	105, 309, 405, 564
Bst2UI	CCWGG	3 cut(s)	247, 428, 611
Bst4CI	ACNGT	2 cut(s)	526, 635
Bst6I	CTCTTC	2 cut(s)	380, 389
BstACI	GRCGYC	4 cut(s)	105, 309, 405, 564
BstC8I	GCNNGC	3 cut(s)	6, 328, 409
BstDEI	CTNAG	1 cut(s)	286
BstDSI	CCRYGG	3 cut(s)	53, 62, 274
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	174, 393
BstFNI	CGCG	5 cut(s)	55, 64, 189, 314, 356
BstH2I	RGCGCY	2 cut(s)	256, 408
BstHHI	GCGC	4 cut(s)	255, 316, 358, 407
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 138, 147, 261
BstNI	CCWGG	3 cut(s)	247, 428, 611
BstNSI	RCATGY	1 cut(s)	508
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	7 cut(s)	145, 245, 426, 473, 547, 548, 609
BstSFI	CTRYAG	1 cut(s)	538
BstUI	CGCG	5 cut(s)	55, 64, 189, 314, 356
BsuRI	GGCC	2 cut(s)	150, 473
BtgI	CCRYGG	3 cut(s)	53, 62, 274
BtrI	CACGTC	2 cut(s)	571, 576
BtsCI	GGATG	2 cut(s)	174, 393
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	6, 328, 409
CfoI	GCGC	4 cut(s)	255, 316, 358, 407
Cfr42I	CCGCGG	2 cut(s)	56, 65
Cfr9I	CCCGGG	1 cut(s)	548
CseI	GACGC	2 cut(s)	317, 553
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	286
DinI	GGCGCC	1 cut(s)	406
DriI	GACNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	380, 389
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	2 cut(s)	380, 389
EciI	GGCGGA	2 cut(s)	202, 232
Ecl136II	GAGCTC	1 cut(s)	592
Eco24I	GRGCYC	2 cut(s)	143, 594
Eco53kI	GAGCTC	1 cut(s)	592
Eco88I	CYCGRG	3 cut(s)	487, 548, 587
Eco91I	GGTNACC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	3 cut(s)	245, 426, 609
EcoT38I	GRGCYC	2 cut(s)	143, 594
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
FaeI	CATG	1 cut(s)	508
FaiI	YATR	2 cut(s)	467, 506
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	1 cut(s)	504
FauI	CCCGC	5 cut(s)	194, 212, 239, 331, 335
Fnu4HI	GCNGC	3 cut(s)	62, 65, 312
FokI	GGATG	2 cut(s)	161, 380
FriOI	GRGCYC	2 cut(s)	143, 594
Fsp4HI	GCNGC	3 cut(s)	62, 65, 312
GlaI	GCGC	4 cut(s)	254, 315, 357, 406
GluI	GCNGC	3 cut(s)	62, 65, 312
GsuI	CTGGAG	1 cut(s)	593
HaeII	RGCGCY	2 cut(s)	256, 408
HaeIII	GGCC	2 cut(s)	150, 473
HapII	CCGG	4 cut(s)	147, 474, 549, 621
HgaI	GACGC	2 cut(s)	317, 553
HhaI	GCGC	4 cut(s)	255, 316, 358, 407
Hin1I	GRCGYC	4 cut(s)	105, 309, 405, 564
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	4 cut(s)	253, 314, 356, 405
HinP1I	GCGC	4 cut(s)	253, 314, 356, 405
HinfI	GANTC	5 cut(s)	17, 191, 284, 532, 544
HpaII	CCGG	4 cut(s)	147, 474, 549, 621
HphI	GGTGA	2 cut(s)	37, 370
Hpy166II	GTNNAC	5 cut(s)	45, 481, 568, 579, 631
Hpy188I	TCNGA	3 cut(s)	16, 22, 289
Hpy188III	TCNNGA	6 cut(s)	109, 223, 439, 454, 529, 587
Hpy8I	GTNNAC	5 cut(s)	45, 481, 568, 579, 631
Hpy99I	CGWCG	7 cut(s)	107, 110, 272, 284, 311, 437, 502
HpyCH4III	ACNGT	2 cut(s)	526, 635
HpyCH4IV	ACGT	5 cut(s)	81, 105, 333, 570, 575
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 138, 147, 261
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	5 cut(s)	81, 105, 333, 570, 575
Hsp92I	GRCGYC	4 cut(s)	105, 309, 405, 564
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	4 cut(s)	253, 314, 356, 405
KasI	GGCGCC	1 cut(s)	404
KspI	CCGCGG	2 cut(s)	56, 65
LmnI	GCTCC	4 cut(s)	37, 173, 597, 612
MaeII	ACGT	5 cut(s)	81, 105, 333, 570, 575
MaeIII	GTNAC	2 cut(s)	25, 571
MboII	GAAGA	6 cut(s)	124, 305, 358, 367, 376, 550
MhlI	GDGCHC	2 cut(s)	143, 594
MluCI	AATT	1 cut(s)	517
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	3 cut(s)	11, 200, 278
MmeI	TCCRAC	2 cut(s)	39, 120
MspA1I	CMGCKG	2 cut(s)	55, 64
MspI	CCGG	4 cut(s)	147, 474, 549, 621
MspR9I	CCNGG	7 cut(s)	147, 247, 428, 475, 549, 550, 611
MvaI	CCWGG	3 cut(s)	247, 428, 611
MvnI	CGCG	5 cut(s)	55, 64, 189, 314, 356
MwoI	GCNNNNNNNGC	4 cut(s)	61, 138, 147, 261
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	4 cut(s)	147, 475, 549, 550
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	25, 571
NspI	RCATGY	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	5 cut(s)	12, 276, 288, 494, 567
PfeI	GAWTC	2 cut(s)	532, 544
Pfl23II	CGTACG	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	63, 66, 313
PleI	GAGTC	3 cut(s)	11, 199, 278
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	3 cut(s)	11, 199, 278
Psp124BI	GAGCTC	1 cut(s)	594
Psp6I	CCWGG	3 cut(s)	245, 426, 609
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	3 cut(s)	245, 426, 609
PspLI	CGTACG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	406
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	594
SacII	CCGCGG	2 cut(s)	56, 65
SatI	GCNGC	3 cut(s)	62, 65, 312
SchI	GAGTC	3 cut(s)	11, 200, 278
ScrFI	CCNGG	7 cut(s)	147, 247, 428, 475, 549, 550, 611
SduI	GDGCHC	2 cut(s)	143, 594
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	587
Sfr303I	CCGCGG	2 cut(s)	56, 65
SgrBI	CCGCGG	2 cut(s)	56, 65
SlaI	CTCGAG	1 cut(s)	587
SmaI	CCCGGG	1 cut(s)	550
SmlI	CTYRAG	3 cut(s)	127, 221, 587
SmoI	CTYRAG	3 cut(s)	127, 221, 587
Sse9I	AATT	1 cut(s)	517
SspDI	GGCGCC	1 cut(s)	404
SspI	AATATT	1 cut(s)	445
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	7 cut(s)	145, 245, 426, 473, 547, 548, 609
TaaI	ACNGT	2 cut(s)	526, 635
TaiI	ACGT	5 cut(s)	84, 108, 336, 573, 578
TaqI	TCGA	3 cut(s)	108, 453, 588
TasI	AATT	1 cut(s)	517
TauI	GCSGC	3 cut(s)	64, 67, 314
TfiI	GAWTC	2 cut(s)	532, 544
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	25, 571
Tsp45I	GTSAC	2 cut(s)	25, 571
TspGWI	ACGGA	1 cut(s)	515
TspMI	CCCGGG	1 cut(s)	548
TspRI	CASTG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	587
XmaI	CCCGGG	1 cut(s)	548
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.