Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004649.1

Orthogroup ID

OG0008796

Physical Location & Seq

Genomic Coordinates Reverse (-)

21114 .. 23054

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004649.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgcacgccaagtccgactccgaggtgaccagcgtggagcagtcgactcctccgcggtcgccgcggcggcccatctactacgtccaaagcccgtccaaccacgacgtcgagaagatgtcgtacggctcaagcccaatgggctctcccgggcacccttactaccactgctcccccatccaccactcccgcgagtcctccacctcccgcttctccgcctccctcaagaacccccgcaacctctccgcctggaagcgcctccaccgccccgacgaccacggcgacgactccgacgaagatgaccagaacgacgccgcgccctcccccggccgcaacgtcaggctctacctctgcttcgcgctcttgttcttcgtcctcttcaccctcttctccctcatcctctggggcgccagcaagtcctacaagccccaggtcgtcgtcaagaatattgtgttcgagagcttcaacatacaggcgggggtggacaactcgggggtggcgacggacatgctgtcgttgaattcaacggtcaggattcactacaggaatccgggaacattcttcggcgtccacgtcacgtccactcctctcgagctccactatttccagctcaaggtcgcctccggtcagataaaaaagttctcccaagcaaggaagactcatcggacaatatcgacagtggtgctagggtctcaagtggctctctacggtggaatttcagttcttgatgttagagggaatcacgagaaggtggcagtgccgctgaatctgacattcgttgtgcgttccagagcctacattttgggaaaactagtgaagtccaagttttataagagaattagatgctctgtcactctgaggggcagcaatctaggcaagcgttctaatttgacagaatcttgcgtctatcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

303

Amino Acids

33.93

Weight (kDa)

9.79

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41990
fragaria_vesca	FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020
malus_domestica	MD05G1129000.v1.1 MD10G1132300.v1.1
prunus_persica	Prupe.8G173100_v2.0.a1 Prupe.8G173100_v2.0.a1
pyrus_communis	pycom05g12560 pycom10g11350
rosa_chinensis	RchiOBHm_Chr6g0279601
rosa_laevigata	RLG00000013134
rosa_multiflora	Rmu_sc0004010.1_g000004 Rmu_sc0004649.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188800
rosa_rugosa	Rorug06G0126400
rosa_samantha	Rh6AG234600 Rh6BG239100 Rh6CG241100 Rh6DG232600
rosa_wichuraiana	Rw6G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AatII	GACGTC	1 cut(s)	108
AccB1I	GGYRCC	2 cut(s)	150, 404
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	5 cut(s)	55, 64, 189, 314, 356
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	517, 711
AcyI	GRCGYC	4 cut(s)	105, 309, 405, 564
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	323, 610, 648
AgsI	TTSAA	3 cut(s)	463, 517, 522
AhdI	GACNNNNNGTC	1 cut(s)	508
AhlI	ACTAGT	1 cut(s)	808
AjiI	CACGTC	2 cut(s)	571, 576
AjnI	CCWGG	2 cut(s)	245, 426
AloI	GAACNNNNNNTCC	2 cut(s)	702, 734
AluBI	AGCT	3 cut(s)	459, 592, 607
AluI	AGCT	3 cut(s)	459, 592, 607
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	1 cut(s)	693
Ama87I	CYCGRG	3 cut(s)	146, 487, 587
AoxI	GGCC	2 cut(s)	68, 325
ApeKI	GCWGC	1 cut(s)	861
ApoI	RAATTY	2 cut(s)	517, 711
AspLEI	GCGC	4 cut(s)	255, 316, 358, 407
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	4 cut(s)	147, 148, 324, 549
AsuHPI	GGTGA	2 cut(s)	37, 370
AvaI	CYCGRG	3 cut(s)	146, 487, 587
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	2 cut(s)	150, 404
BanII	GRGCYC	2 cut(s)	143, 594
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BauI	CACGAG	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	873
BccI	CCATC	2 cut(s)	80, 182
BceAI	ACGGC	2 cut(s)	139, 292
BcgI	CGANNNNNNTGC	4 cut(s)	487, 521, 661, 695
BciT130I	CCWGG	2 cut(s)	247, 428
BcnI	CCSGG	4 cut(s)	147, 148, 324, 549
BcoDI	GTCTC	1 cut(s)	693
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	3 cut(s)	683, 809, 869
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	2 cut(s)	256, 408
BglI	GCCNNNNNGGC	2 cut(s)	67, 138
BisI	GCNGC	7 cut(s)	62, 65, 68, 312, 328, 758, 862
BlsI	GCNGC	7 cut(s)	63, 66, 69, 313, 329, 759, 863
Bme1390I	CCNGG	6 cut(s)	147, 148, 247, 324, 428, 549
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmeT110I	CYCGRG	3 cut(s)	146, 487, 587
BmgBI	CACGTC	2 cut(s)	571, 576
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	152, 406
BmrFI	CCNGG	6 cut(s)	147, 148, 247, 324, 428, 549
BmsI	GCATC	1 cut(s)	830
BpiI	GAAGAC	1 cut(s)	659
BpuEI	CTTGAG	4 cut(s)	112, 206, 593, 675
BpuMI	CCSGG	4 cut(s)	147, 148, 324, 549
BsaHI	GRCGYC	4 cut(s)	105, 309, 405, 564
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	7 cut(s)	21, 53, 62, 146, 274, 322, 426
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 565, 595
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 610, 648
BseBI	CCWGG	2 cut(s)	247, 428
BseDI	CCNNGG	7 cut(s)	21, 53, 62, 146, 274, 322, 426
BseGI	GGATG	2 cut(s)	174, 393
BseLI	CCNNNNNNNGG	3 cut(s)	323, 610, 648
BseMII	CTCAG	1 cut(s)	845
BseRI	GAGGAG	2 cut(s)	39, 573
BseSI	GKGCMC	1 cut(s)	153
BseX3I	CGGCCG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	873
Bsh1236I	CGCG	5 cut(s)	55, 64, 189, 314, 356
Bsh1285I	CGRYCG	2 cut(s)	59, 328
BshFI	GGCC	2 cut(s)	70, 327
BshNI	GGYRCC	2 cut(s)	150, 404
BsiEI	CGRYCG	2 cut(s)	59, 328
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	3 cut(s)	146, 487, 587
BsiSI	CCGG	4 cut(s)	147, 324, 548, 621
BsiWI	CGTACG	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	323, 610, 648
BsmAI	GTCTC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	70, 327
Bso31I	GGTCTC	1 cut(s)	693
BsoBI	CYCGRG	3 cut(s)	146, 487, 587
Bsp1286I	GDGCHC	3 cut(s)	143, 153, 594
BspANI	GGCC	2 cut(s)	70, 327
BspCNI	CTCAG	1 cut(s)	846
BspFNI	CGCG	5 cut(s)	55, 64, 189, 314, 356
BspLI	GGNNCC	2 cut(s)	152, 406
BspT107I	GGYRCC	2 cut(s)	150, 404
BspTNI	GGTCTC	1 cut(s)	693
BssECI	CCNNGG	7 cut(s)	21, 53, 62, 146, 274, 322, 426
BssNI	GRCGYC	4 cut(s)	105, 309, 405, 564
BssSI	CACGAG	1 cut(s)	740
Bst2BI	CACGAG	1 cut(s)	740
Bst2UI	CCWGG	2 cut(s)	247, 428
Bst4CI	ACNGT	3 cut(s)	526, 676, 707
Bst6I	CTCTTC	2 cut(s)	380, 389
BstACI	GRCGYC	4 cut(s)	105, 309, 405, 564
BstC8I	GCNNGC	3 cut(s)	6, 409, 875
BstDEI	CTNAG	1 cut(s)	854
BstDSI	CCRYGG	3 cut(s)	53, 62, 274
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	174, 393
BstFNI	CGCG	5 cut(s)	55, 64, 189, 314, 356
BstH2I	RGCGCY	2 cut(s)	256, 408
BstHHI	GCGC	4 cut(s)	255, 316, 358, 407
BstMAI	GTCTC	1 cut(s)	693
BstMCI	CGRYCG	2 cut(s)	59, 328
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 67, 138, 261, 870
BstNI	CCWGG	2 cut(s)	247, 428
BstNSI	RCATGY	1 cut(s)	508
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	6 cut(s)	145, 146, 245, 322, 426, 547
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	5 cut(s)	55, 64, 189, 314, 356
BstV1I	GCAGC	1 cut(s)	873
BstV2I	GAAGAC	1 cut(s)	659
BstZI	CGGCCG	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	70, 327
BtgI	CCRYGG	3 cut(s)	53, 62, 274
BtrI	CACGTC	2 cut(s)	571, 576
BtsCI	GGATG	2 cut(s)	174, 393
BtsI	GCAGTG	2 cut(s)	163, 759
BtsIMutI	CAGTG	4 cut(s)	163, 681, 759, 907
Cac8I	GCNNGC	3 cut(s)	6, 409, 875
CfoI	GCGC	4 cut(s)	255, 316, 358, 407
Cfr13I	GGNCC	1 cut(s)	69
Cfr42I	CCGCGG	2 cut(s)	56, 65
Cfr9I	CCCGGG	1 cut(s)	146
CseI	GACGC	3 cut(s)	317, 553, 889
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	854
DinI	GGCGCC	1 cut(s)	406
DriI	GACNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	325
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	380, 389
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	2 cut(s)	380, 389
EciI	GGCGGA	2 cut(s)	202, 232
Ecl136II	GAGCTC	1 cut(s)	592
EclXI	CGGCCG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	143, 594
Eco31I	GGTCTC	1 cut(s)	693
Eco52I	CGGCCG	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	592
Eco88I	CYCGRG	3 cut(s)	146, 487, 587
Eco91I	GGTNACC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	2 cut(s)	245, 426
EcoT38I	GRGCYC	2 cut(s)	143, 594
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
FaeI	CATG	1 cut(s)	508
FaiI	YATR	3 cut(s)	467, 506, 828
FatI	CATG	1 cut(s)	504
FauI	CCCGC	4 cut(s)	194, 212, 239, 466
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	7 cut(s)	62, 65, 68, 312, 328, 758, 862
FokI	GGATG	2 cut(s)	161, 380
FriOI	GRGCYC	2 cut(s)	143, 594
Fsp4HI	GCNGC	7 cut(s)	62, 65, 68, 312, 328, 758, 862
FspBI	CTAG	3 cut(s)	683, 809, 869
GlaI	GCGC	4 cut(s)	254, 315, 357, 406
GluI	GCNGC	7 cut(s)	62, 65, 68, 312, 328, 758, 862
HaeII	RGCGCY	2 cut(s)	256, 408
HaeIII	GGCC	2 cut(s)	70, 327
HapII	CCGG	4 cut(s)	147, 324, 548, 621
HgaI	GACGC	3 cut(s)	317, 553, 889
HhaI	GCGC	4 cut(s)	255, 316, 358, 407
Hin1I	GRCGYC	4 cut(s)	105, 309, 405, 564
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	4 cut(s)	253, 314, 356, 405
HinP1I	GCGC	4 cut(s)	253, 314, 356, 405
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HpaII	CCGG	4 cut(s)	147, 324, 548, 621
HphI	GGTGA	2 cut(s)	37, 370
Hpy166II	GTNNAC	4 cut(s)	45, 481, 568, 579
Hpy188I	TCNGA	7 cut(s)	16, 22, 289, 627, 663, 768, 855
Hpy188III	TCNNGA	9 cut(s)	109, 223, 439, 454, 529, 587, 722, 740, 786
Hpy8I	GTNNAC	4 cut(s)	45, 481, 568, 579
Hpy99I	CGWCG	8 cut(s)	107, 110, 272, 284, 293, 311, 437, 502
HpyAV	CCTTC	1 cut(s)	739
HpyCH4III	ACNGT	3 cut(s)	526, 676, 707
HpyCH4IV	ACGT	5 cut(s)	81, 105, 333, 570, 575
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 67, 138, 261, 870
HpyF3I	CTNAG	1 cut(s)	854
HpySE526I	ACGT	5 cut(s)	81, 105, 333, 570, 575
Hsp92I	GRCGYC	4 cut(s)	105, 309, 405, 564
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	4 cut(s)	253, 314, 356, 405
KasI	GGCGCC	1 cut(s)	404
KspI	CCGCGG	2 cut(s)	56, 65
LmnI	GCTCC	3 cut(s)	37, 173, 597
Lsp1109I	GCAGC	1 cut(s)	873
LweI	GCATC	1 cut(s)	830
MaeI	CTAG	3 cut(s)	683, 809, 869
MaeII	ACGT	5 cut(s)	81, 105, 333, 570, 575
MaeIII	GTNAC	3 cut(s)	25, 571, 847
MboII	GAAGA	7 cut(s)	124, 305, 358, 367, 376, 550, 664
MhlI	GDGCHC	3 cut(s)	143, 153, 594
MluCI	AATT	4 cut(s)	517, 711, 834, 883
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	5 cut(s)	11, 40, 200, 278, 649
MmeI	TCCRAC	3 cut(s)	39, 120, 312
MspA1I	CMGCKG	3 cut(s)	55, 64, 760
MspI	CCGG	4 cut(s)	147, 324, 548, 621
MspR9I	CCNGG	6 cut(s)	147, 148, 247, 324, 428, 549
MvaI	CCWGG	2 cut(s)	247, 428
MvnI	CGCG	5 cut(s)	55, 64, 189, 314, 356
MwoI	GCNNNNNNNGC	5 cut(s)	61, 67, 138, 261, 870
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	4 cut(s)	147, 148, 324, 549
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	2 cut(s)	152, 406
NmuCI	GTSAC	3 cut(s)	25, 571, 847
NspI	RCATGY	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	5 cut(s)	12, 276, 288, 494, 567
PfeI	GAWTC	5 cut(s)	532, 544, 736, 763, 893
Pfl23II	CGTACG	1 cut(s)	120
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	7 cut(s)	63, 66, 69, 313, 329, 759, 863
PleI	GAGTC	5 cut(s)	11, 40, 199, 278, 649
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	5 cut(s)	11, 40, 199, 278, 649
PsiI	TTATAA	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	245, 426
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	2 cut(s)	245, 426
PspLI	CGTACG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	152, 406
PspPI	GGNCC	1 cut(s)	69
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	594
SacII	CCGCGG	2 cut(s)	56, 65
SalI	GTCGAC	1 cut(s)	43
SatI	GCNGC	7 cut(s)	62, 65, 68, 312, 328, 758, 862
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	5 cut(s)	11, 40, 200, 278, 649
ScrFI	CCNGG	6 cut(s)	147, 148, 247, 324, 428, 549
SduI	GDGCHC	3 cut(s)	143, 153, 594
SfaNI	GCATC	1 cut(s)	830
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	587
Sfr303I	CCGCGG	2 cut(s)	56, 65
SgrBI	CCGCGG	2 cut(s)	56, 65
SlaI	CTCGAG	1 cut(s)	587
SmaI	CCCGGG	1 cut(s)	148
SmlI	CTYRAG	5 cut(s)	127, 221, 587, 608, 690
SmoI	CTYRAG	5 cut(s)	127, 221, 587, 608, 690
SpeI	ACTAGT	1 cut(s)	808
Sse9I	AATT	4 cut(s)	517, 711, 834, 883
SspDI	GGCGCC	1 cut(s)	404
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	3 cut(s)	683, 809, 869
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	6 cut(s)	145, 146, 245, 322, 426, 547
TaaI	ACNGT	3 cut(s)	526, 676, 707
TaiI	ACGT	5 cut(s)	84, 108, 336, 573, 578
TaqI	TCGA	5 cut(s)	44, 108, 453, 588, 671
TasI	AATT	4 cut(s)	517, 711, 834, 883
TauI	GCSGC	6 cut(s)	64, 67, 70, 314, 330, 760
TfiI	GAWTC	5 cut(s)	532, 544, 736, 763, 893
TscAI	CASTG	3 cut(s)	170, 681, 759
TseFI	GTSAC	3 cut(s)	25, 571, 847
TseI	GCWGC	1 cut(s)	861
Tsp45I	GTSAC	3 cut(s)	25, 571, 847
TspGWI	ACGGA	1 cut(s)	515
TspMI	CCCGGG	1 cut(s)	146
TspRI	CASTG	3 cut(s)	170, 681, 759
XapI	RAATTY	2 cut(s)	517, 711
XceI	RCATGY	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	587
XmaI	CCCGGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	44
XspI	CTAG	3 cut(s)	683, 809, 869
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.