Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008796

Physical Location & Seq

Genomic Coordinates Forward (+)

44515914 .. 44518668

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG239100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCACGCCAAGTCCGACTCCGAGGTGACCAGCGTGGAGCAGTCCACTCCTCCACGGTCGCCGCGGCGGCCCATCTACTACGTCCAAAGCCCGTCCAACCACGACGTCGAGAAGATGTCGTACGGCTCAAGCCCAATGGGCTCTCCCGGCCACCCTTACTACCACTGCTCCCCCATCCACCACTCCCGCGAGTCCTCCACCTCCCGCTTCTCCGCCTCCCTCAAGAACCCCCGCAACCTCTCCGCCTGGAAGCGCCTCCACCGCCCCGACGACCACGGCGACGACTCCGACGAAGATGACCAGAACGACGCCGCGCCCTCCCCCGGCCGCAACGTCAGGCTCTACCTCTGCTTCGCGCTCTTGTTCTTCGTCCTCTTCACCCTCTTCTCCCTCATCCTCTGGGGCGCCAGCAAGTCCTACAAGCCCCAGGTCGTCGTCAAGAATATTGTGTTCGAGAGCTTCAACATACAGGCCGGGGTGGACAACTCGGGGGTGGCGACGGAGATGCTGTCGTTGAATTCAACCGTCAGGATTCACTACAGGAATCCGGGGACATTCTTCGGCGTCCACGTCACGTCCACTCCTCTCGAGCTCCACTATTTCCAGCTCAAGGTCGCCTCCGGTCAGGTAAACCGTGCCACAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

24.04

Weight (kDa)

8.53

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41990
fragaria_vesca	FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020 FvH4_2g16020
malus_domestica	MD05G1129000.v1.1 MD10G1132300.v1.1
prunus_persica	Prupe.8G173100_v2.0.a1 Prupe.8G173100_v2.0.a1
pyrus_communis	pycom05g12560 pycom10g11350
rosa_chinensis	RchiOBHm_Chr6g0279601
rosa_laevigata	RLG00000013134
rosa_multiflora	Rmu_sc0004010.1_g000004 Rmu_sc0004649.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188800
rosa_rugosa	Rorug06G0126400
rosa_samantha	Rh6AG234600 Rh6BG239100 Rh6CG241100 Rh6DG232600
rosa_wichuraiana	Rw6G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	4 cut(s)	64, 189, 314, 356
AcoI	YGGCCR	2 cut(s)	148, 325
AcsI	RAATTY	1 cut(s)	517
AcyI	GRCGYC	4 cut(s)	105, 309, 405, 564
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	323, 610
AgsI	TTSAA	3 cut(s)	463, 517, 522
AjiI	CACGTC	2 cut(s)	571, 576
AjnI	CCWGG	2 cut(s)	245, 426
AluBI	AGCT	3 cut(s)	459, 592, 607
AluI	AGCT	3 cut(s)	459, 592, 607
Alw21I	GWGCWC	1 cut(s)	594
Ama87I	CYCGRG	2 cut(s)	487, 587
AoxI	GGCC	4 cut(s)	68, 148, 325, 471
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	4 cut(s)	255, 316, 358, 407
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	4 cut(s)	147, 324, 475, 549
AsuHPI	GGTGA	2 cut(s)	37, 370
AvaI	CYCGRG	2 cut(s)	487, 587
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	143, 594
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
Bbv12I	GWGCWC	1 cut(s)	594
BccI	CCATC	2 cut(s)	80, 182
BceAI	ACGGC	2 cut(s)	139, 292
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	2 cut(s)	247, 428
BcnI	CCSGG	4 cut(s)	147, 324, 475, 549
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	2 cut(s)	256, 408
BglI	GCCNNNNNGGC	2 cut(s)	67, 138
BisI	GCNGC	5 cut(s)	62, 65, 68, 312, 328
BlsI	GCNGC	5 cut(s)	63, 66, 69, 313, 329
Bme1390I	CCNGG	6 cut(s)	147, 247, 324, 428, 475, 549
BmeT110I	CYCGRG	2 cut(s)	487, 587
BmgBI	CACGTC	2 cut(s)	571, 576
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	6 cut(s)	147, 247, 324, 428, 475, 549
BmsI	GCATC	1 cut(s)	495
BpuEI	CTTGAG	3 cut(s)	112, 206, 593
BpuMI	CCSGG	4 cut(s)	147, 324, 475, 549
BsaHI	GRCGYC	4 cut(s)	105, 309, 405, 564
BsaJI	CCNNGG	8 cut(s)	21, 53, 62, 274, 322, 426, 474, 548
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 182, 494, 524, 565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 610
BseBI	CCWGG	2 cut(s)	247, 428
BseDI	CCNNGG	8 cut(s)	21, 53, 62, 274, 322, 426, 474, 548
BseGI	GGATG	2 cut(s)	174, 393
BseLI	CCNNNNNNNGG	2 cut(s)	323, 610
BseRI	GAGGAG	2 cut(s)	39, 573
BseX3I	CGGCCG	1 cut(s)	325
Bsh1236I	CGCG	4 cut(s)	64, 189, 314, 356
Bsh1285I	CGRYCG	2 cut(s)	59, 328
BshFI	GGCC	4 cut(s)	70, 150, 327, 473
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	59, 328
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	2 cut(s)	487, 587
BsiSI	CCGG	5 cut(s)	147, 324, 474, 548, 621
BsiWI	CGTACG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	323, 610
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	4 cut(s)	70, 150, 327, 473
BsoBI	CYCGRG	2 cut(s)	487, 587
Bsp1286I	GDGCHC	2 cut(s)	143, 594
BspANI	GGCC	4 cut(s)	70, 150, 327, 473
BspFNI	CGCG	4 cut(s)	64, 189, 314, 356
BspLI	GGNNCC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	404
BssECI	CCNNGG	8 cut(s)	21, 53, 62, 274, 322, 426, 474, 548
BssNI	GRCGYC	4 cut(s)	105, 309, 405, 564
Bst2UI	CCWGG	2 cut(s)	247, 428
Bst4CI	ACNGT	3 cut(s)	57, 526, 635
Bst6I	CTCTTC	2 cut(s)	380, 389
BstACI	GRCGYC	4 cut(s)	105, 309, 405, 564
BstC8I	GCNNGC	2 cut(s)	6, 409
BstDSI	CCRYGG	3 cut(s)	53, 62, 274
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	174, 393
BstFNI	CGCG	4 cut(s)	64, 189, 314, 356
BstH2I	RGCGCY	2 cut(s)	256, 408
BstHHI	GCGC	4 cut(s)	255, 316, 358, 407
BstMCI	CGRYCG	2 cut(s)	59, 328
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 138, 147, 261
BstNI	CCWGG	2 cut(s)	247, 428
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	6 cut(s)	145, 245, 322, 426, 473, 547
BstSFI	CTRYAG	1 cut(s)	538
BstUI	CGCG	4 cut(s)	64, 189, 314, 356
BstZI	CGGCCG	1 cut(s)	325
BsuRI	GGCC	4 cut(s)	70, 150, 327, 473
BtgI	CCRYGG	3 cut(s)	53, 62, 274
BtrI	CACGTC	2 cut(s)	571, 576
BtsCI	GGATG	2 cut(s)	174, 393
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	6, 409
CfoI	GCGC	4 cut(s)	255, 316, 358, 407
Cfr13I	GGNCC	1 cut(s)	69
Cfr42I	CCGCGG	1 cut(s)	65
CseI	GACGC	2 cut(s)	317, 553
Csp6I	GTAC	1 cut(s)	121
CviQI	GTAC	1 cut(s)	121
DinI	GGCGCC	1 cut(s)	406
EaeI	YGGCCR	2 cut(s)	148, 325
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	380, 389
EarI	CTCTTC	2 cut(s)	380, 389
EciI	GGCGGA	2 cut(s)	202, 232
Ecl136II	GAGCTC	1 cut(s)	592
EclXI	CGGCCG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	143, 594
Eco52I	CGGCCG	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	592
Eco88I	CYCGRG	2 cut(s)	487, 587
Eco91I	GGTNACC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	2 cut(s)	245, 426
EcoT38I	GRGCYC	2 cut(s)	143, 594
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
FaiI	YATR	1 cut(s)	467
FaqI	GGGAC	1 cut(s)	565
FauI	CCCGC	3 cut(s)	194, 212, 239
Fnu4HI	GCNGC	5 cut(s)	62, 65, 68, 312, 328
FokI	GGATG	2 cut(s)	161, 380
FriOI	GRGCYC	2 cut(s)	143, 594
Fsp4HI	GCNGC	5 cut(s)	62, 65, 68, 312, 328
GlaI	GCGC	4 cut(s)	254, 315, 357, 406
GluI	GCNGC	5 cut(s)	62, 65, 68, 312, 328
HaeII	RGCGCY	2 cut(s)	256, 408
HaeIII	GGCC	4 cut(s)	70, 150, 327, 473
HapII	CCGG	5 cut(s)	147, 324, 474, 548, 621
HgaI	GACGC	2 cut(s)	317, 553
HhaI	GCGC	4 cut(s)	255, 316, 358, 407
Hin1I	GRCGYC	4 cut(s)	105, 309, 405, 564
Hin6I	GCGC	4 cut(s)	253, 314, 356, 405
HinP1I	GCGC	4 cut(s)	253, 314, 356, 405
HinfI	GANTC	5 cut(s)	17, 191, 284, 532, 544
HpaII	CCGG	5 cut(s)	147, 324, 474, 548, 621
HphI	GGTGA	2 cut(s)	37, 370
Hpy166II	GTNNAC	5 cut(s)	45, 481, 568, 579, 631
Hpy188I	TCNGA	3 cut(s)	16, 22, 289
Hpy188III	TCNNGA	6 cut(s)	109, 223, 439, 454, 529, 587
Hpy8I	GTNNAC	5 cut(s)	45, 481, 568, 579, 631
Hpy99I	CGWCG	8 cut(s)	107, 110, 272, 284, 293, 311, 437, 502
HpyCH4III	ACNGT	3 cut(s)	57, 526, 635
HpyCH4IV	ACGT	5 cut(s)	81, 105, 333, 570, 575
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 138, 147, 261
HpySE526I	ACGT	5 cut(s)	81, 105, 333, 570, 575
Hsp92I	GRCGYC	4 cut(s)	105, 309, 405, 564
HspAI	GCGC	4 cut(s)	253, 314, 356, 405
KasI	GGCGCC	1 cut(s)	404
KspI	CCGCGG	1 cut(s)	65
LmnI	GCTCC	3 cut(s)	37, 173, 597
LweI	GCATC	1 cut(s)	495
MaeII	ACGT	5 cut(s)	81, 105, 333, 570, 575
MaeIII	GTNAC	2 cut(s)	25, 571
MboII	GAAGA	6 cut(s)	124, 305, 358, 367, 376, 550
MhlI	GDGCHC	2 cut(s)	143, 594
MluCI	AATT	1 cut(s)	517
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	3 cut(s)	11, 200, 278
MmeI	TCCRAC	3 cut(s)	39, 120, 312
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	5 cut(s)	147, 324, 474, 548, 621
MspR9I	CCNGG	6 cut(s)	147, 247, 324, 428, 475, 549
MvaI	CCWGG	2 cut(s)	247, 428
MvnI	CGCG	4 cut(s)	64, 189, 314, 356
MwoI	GCNNNNNNNGC	4 cut(s)	67, 138, 147, 261
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	4 cut(s)	147, 324, 475, 549
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	25, 571
PaeR7I	CTCGAG	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	5 cut(s)	12, 276, 288, 494, 567
PfeI	GAWTC	2 cut(s)	532, 544
Pfl23II	CGTACG	1 cut(s)	120
PkrI	GCNGC	5 cut(s)	63, 66, 69, 313, 329
PleI	GAGTC	3 cut(s)	11, 199, 278
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	3 cut(s)	11, 199, 278
Psp124BI	GAGCTC	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	245, 426
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	2 cut(s)	245, 426
PspLI	CGTACG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	69
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	594
SacII	CCGCGG	1 cut(s)	65
SatI	GCNGC	5 cut(s)	62, 65, 68, 312, 328
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	3 cut(s)	11, 200, 278
ScrFI	CCNGG	6 cut(s)	147, 247, 324, 428, 475, 549
SduI	GDGCHC	2 cut(s)	143, 594
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	587
Sfr303I	CCGCGG	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	587
SmlI	CTYRAG	4 cut(s)	127, 221, 587, 608
SmoI	CTYRAG	4 cut(s)	127, 221, 587, 608
Sse9I	AATT	1 cut(s)	517
SspDI	GGCGCC	1 cut(s)	404
SspI	AATATT	1 cut(s)	445
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	6 cut(s)	145, 245, 322, 426, 473, 547
TaaI	ACNGT	3 cut(s)	57, 526, 635
TaiI	ACGT	5 cut(s)	84, 108, 336, 573, 578
TaqI	TCGA	3 cut(s)	108, 453, 588
TasI	AATT	1 cut(s)	517
TauI	GCSGC	5 cut(s)	64, 67, 70, 314, 330
TfiI	GAWTC	2 cut(s)	532, 544
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	25, 571
Tsp45I	GTSAC	2 cut(s)	25, 571
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	587
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.