dna polymerase delta small
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42120 AT2G42120 |
| fragaria_vesca | FvH4_6g22330 FvH4_6g22330 |
| malus_domestica | MD12G1057200.v1.1 MD14G1057800.v1.1 |
| prunus_persica | Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1 |
| pyrus_communis | pycom14g04690 |
| rosa_chinensis | RchiOBHm_Chr3g0479691 |
| rosa_multiflora | Rmu_sc0003755.1_g000006 Rmu_sc0031395.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00402060 |
| rosa_rugosa | Rorug03G0177400 Rorug03G0177500 Rorug03G0177600 |
| rosa_samantha | Rh3AG228200 Rh3BG261400 Rh3CG258500 Rh3DG254700 |
| rosa_wichuraiana | Rw3G020420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 912 |
| AarI | CACCTGC | 1 cut(s) | 415 |
| Acc36I | ACCTGC | 2 cut(s) | 415, 1145 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 736 |
| AccBSI | CCGCTC | 1 cut(s) | 517 |
| AccI | GTMKAC | 1 cut(s) | 1149 |
| AciI | CCGC | 6 cut(s) | 311, 396, 517, 712, 1142, 1262 |
| AclWI | GGATC | 3 cut(s) | 349, 839, 907 |
| AcoI | YGGCCR | 1 cut(s) | 727 |
| AcsI | RAATTY | 3 cut(s) | 21, 467, 704 |
| AcuI | CTGAAG | 1 cut(s) | 904 |
| AfaI | GTAC | 4 cut(s) | 92, 486, 931, 1010 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 736 |
| AgeI | ACCGGT | 1 cut(s) | 1247 |
| AgsI | TTSAA | 4 cut(s) | 212, 250, 704, 1133 |
| AjnI | CCWGG | 2 cut(s) | 832, 895 |
| Alw26I | GTCTC | 3 cut(s) | 1054, 1110, 1238 |
| AlwI | GGATC | 3 cut(s) | 349, 839, 907 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 877 |
| AoxI | GGCC | 5 cut(s) | 518, 562, 655, 727, 738 |
| ApeKI | GCWGC | 5 cut(s) | 55, 662, 806, 871, 1207 |
| ApoI | RAATTY | 3 cut(s) | 21, 467, 704 |
| AseI | ATTAAT | 1 cut(s) | 723 |
| AsiGI | ACCGGT | 1 cut(s) | 1247 |
| AspS9I | GGNCC | 1 cut(s) | 562 |
| AsuHPI | GGTGA | 5 cut(s) | 396, 476, 897, 1099, 1276 |
| BalI | TGGCCA | 1 cut(s) | 729 |
| BanII | GRGCYC | 1 cut(s) | 771 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 74, 106, 483, 515 |
| BbsI | GAAGAC | 2 cut(s) | 122, 369 |
| BbvCI | CCTCAGC | 2 cut(s) | 867, 1052 |
| BbvI | GCAGC | 5 cut(s) | 42, 674, 793, 883, 1219 |
| BccI | CCATC | 1 cut(s) | 779 |
| BciT130I | CCWGG | 2 cut(s) | 834, 897 |
| BcoDI | GTCTC | 3 cut(s) | 1054, 1110, 1238 |
| BfaI | CTAG | 1 cut(s) | 488 |
| BfmI | CTRYAG | 4 cut(s) | 56, 530, 596, 807 |
| BfuAI | ACCTGC | 2 cut(s) | 415, 1145 |
| BisI | GCNGC | 6 cut(s) | 56, 518, 663, 807, 872, 1208 |
| BlsI | GCNGC | 6 cut(s) | 57, 519, 664, 808, 873, 1209 |
| BmcAI | AGTACT | 1 cut(s) | 1010 |
| Bme1390I | CCNGG | 2 cut(s) | 834, 897 |
| BmgT120I | GGNCC | 1 cut(s) | 562 |
| BmiI | GGNNCC | 2 cut(s) | 241, 394 |
| BmrFI | CCNGG | 2 cut(s) | 834, 897 |
| BmrI | ACTGGG | 1 cut(s) | 636 |
| BmsI | GCATC | 2 cut(s) | 346, 640 |
| BmuI | ACTGGG | 1 cut(s) | 636 |
| BpiI | GAAGAC | 2 cut(s) | 122, 369 |
| Bpu10I | CCTNAGC | 2 cut(s) | 867, 1052 |
| Bsa29I | ATCGAT | 2 cut(s) | 525, 993 |
| BsaBI | GATNNNNATC | 1 cut(s) | 348 |
| BsaI | GGTCTC | 2 cut(s) | 1110, 1238 |
| BsaJI | CCNNGG | 2 cut(s) | 895, 1000 |
| BsaWI | WCCGGW | 2 cut(s) | 1215, 1247 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 804, 834 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 736 |
| Bse118I | RCCGGY | 1 cut(s) | 1247 |
| Bse1I | ACTGG | 1 cut(s) | 631 |
| Bse3DI | GCAATG | 1 cut(s) | 860 |
| Bse8I | GATNNNNATC | 1 cut(s) | 348 |
| BseBI | CCWGG | 2 cut(s) | 834, 897 |
| BseCI | ATCGAT | 2 cut(s) | 525, 993 |
| BseDI | CCNNGG | 2 cut(s) | 895, 1000 |
| BseGI | GGATG | 3 cut(s) | 67, 337, 487 |
| BseJI | GATNNNNATC | 1 cut(s) | 348 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 736 |
| BseMI | GCAATG | 1 cut(s) | 860 |
| BseMII | CTCAG | 5 cut(s) | 521, 881, 1026, 1043, 1322 |
| BseNI | ACTGG | 1 cut(s) | 631 |
| BseRI | GAGGAG | 1 cut(s) | 659 |
| BseXI | GCAGC | 5 cut(s) | 42, 674, 793, 883, 1219 |
| BsgI | GTGCAG | 1 cut(s) | 1062 |
| BshFI | GGCC | 5 cut(s) | 520, 564, 657, 729, 740 |
| BshTI | ACCGGT | 1 cut(s) | 1247 |
| BshVI | ATCGAT | 2 cut(s) | 525, 993 |
| BsiSI | CCGG | 2 cut(s) | 1216, 1248 |
| BslFI | GGGAC | 1 cut(s) | 219 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 736 |
| BsmAI | GTCTC | 3 cut(s) | 1054, 1110, 1238 |
| BsmFI | GGGAC | 1 cut(s) | 219 |
| BsmI | GAATGC | 2 cut(s) | 230, 1227 |
| BsnI | GGCC | 5 cut(s) | 520, 564, 657, 729, 740 |
| Bso31I | GGTCTC | 2 cut(s) | 1110, 1238 |
| Bsp1286I | GDGCHC | 1 cut(s) | 771 |
| Bsp1407I | TGTACA | 2 cut(s) | 90, 929 |
| Bsp143I | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| BspACI | CCGC | 6 cut(s) | 311, 396, 517, 712, 1142, 1262 |
| BspANI | GGCC | 5 cut(s) | 520, 564, 657, 729, 740 |
| BspCNI | CTCAG | 5 cut(s) | 520, 880, 1025, 1044, 1321 |
| BspDI | ATCGAT | 2 cut(s) | 525, 993 |
| BspHI | TCATGA | 1 cut(s) | 138 |
| BspLI | GGNNCC | 2 cut(s) | 241, 394 |
| BspMAI | CTGCAG | 3 cut(s) | 60, 600, 811 |
| BspMI | ACCTGC | 2 cut(s) | 415, 1145 |
| BspPI | GGATC | 3 cut(s) | 349, 839, 907 |
| BspTNI | GGTCTC | 2 cut(s) | 1110, 1238 |
| BsrBI | CCGCTC | 1 cut(s) | 517 |
| BsrDI | GCAATG | 1 cut(s) | 860 |
| BsrFI | RCCGGY | 1 cut(s) | 1247 |
| BsrGI | TGTACA | 2 cut(s) | 90, 929 |
| BsrI | ACTGG | 1 cut(s) | 631 |
| BssAI | RCCGGY | 1 cut(s) | 1247 |
| BssECI | CCNNGG | 2 cut(s) | 895, 1000 |
| BssMI | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| BssT1I | CCWWGG | 1 cut(s) | 1000 |
| Bst2UI | CCWGG | 2 cut(s) | 834, 897 |
| Bst4CI | ACNGT | 3 cut(s) | 110, 762, 1184 |
| BstAUI | TGTACA | 2 cut(s) | 90, 929 |
| BstC8I | GCNNGC | 3 cut(s) | 387, 1028, 1142 |
| BstDEI | CTNAG | 8 cut(s) | 507, 867, 1012, 1020, 1052, 1233, 1271, 1308 |
| BstF5I | GGATG | 3 cut(s) | 67, 337, 487 |
| BstKTI | GATC | 7 cut(s) | 357, 529, 751, 847, 902, 926, 1224 |
| BstMAI | GTCTC | 3 cut(s) | 1054, 1110, 1238 |
| BstMBI | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 395, 604, 857, 871, 1076 |
| BstNI | CCWGG | 2 cut(s) | 834, 897 |
| BstNSI | RCATGY | 1 cut(s) | 1148 |
| BstSCI | CCNGG | 2 cut(s) | 832, 895 |
| BstSFI | CTRYAG | 4 cut(s) | 56, 530, 596, 807 |
| BstV1I | GCAGC | 5 cut(s) | 42, 674, 793, 883, 1219 |
| BstV2I | GAAGAC | 2 cut(s) | 122, 369 |
| BstX2I | RGATCY | 1 cut(s) | 899 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 899 |
| Bsu15I | ATCGAT | 2 cut(s) | 525, 993 |
| BsuRI | GGCC | 5 cut(s) | 520, 564, 657, 729, 740 |
| BsuTUI | ATCGAT | 2 cut(s) | 525, 993 |
| BtsCI | GGATG | 3 cut(s) | 67, 337, 487 |
| BtsI | GCAGTG | 1 cut(s) | 437 |
| BtsIMutI | CAGTG | 2 cut(s) | 437, 758 |
| BveI | ACCTGC | 2 cut(s) | 415, 1145 |
| Cac8I | GCNNGC | 3 cut(s) | 387, 1028, 1142 |
| CaiI | CAGNNNCTG | 1 cut(s) | 877 |
| CciI | TCATGA | 1 cut(s) | 138 |
| Cfr10I | RCCGGY | 1 cut(s) | 1247 |
| Cfr13I | GGNCC | 1 cut(s) | 562 |
| ClaI | ATCGAT | 2 cut(s) | 525, 993 |
| Csp6I | GTAC | 4 cut(s) | 91, 485, 930, 1009 |
| CspAI | ACCGGT | 1 cut(s) | 1247 |
| CviAII | CATG | 8 cut(s) | 139, 256, 443, 677, 790, 829, 927, 1145 |
| CviQI | GTAC | 4 cut(s) | 91, 485, 930, 1009 |
| DdeI | CTNAG | 8 cut(s) | 507, 867, 1012, 1020, 1052, 1233, 1271, 1308 |
| DpnI | GATC | 7 cut(s) | 356, 528, 750, 846, 901, 925, 1223 |
| DpnII | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| EaeI | YGGCCR | 1 cut(s) | 727 |
| Eco130I | CCWWGG | 1 cut(s) | 1000 |
| Eco147I | AGGCCT | 1 cut(s) | 657 |
| Eco24I | GRGCYC | 1 cut(s) | 771 |
| Eco31I | GGTCTC | 2 cut(s) | 1110, 1238 |
| Eco32I | GATATC | 2 cut(s) | 787, 826 |
| Eco57I | CTGAAG | 1 cut(s) | 904 |
| EcoRI | GAATTC | 1 cut(s) | 467 |
| EcoRII | CCWGG | 2 cut(s) | 832, 895 |
| EcoRV | GATATC | 2 cut(s) | 787, 826 |
| EcoT14I | CCWWGG | 1 cut(s) | 1000 |
| EcoT22I | ATGCAT | 2 cut(s) | 230, 339 |
| EcoT38I | GRGCYC | 1 cut(s) | 771 |
| ErhI | CCWWGG | 1 cut(s) | 1000 |
| FaeI | CATG | 8 cut(s) | 142, 259, 446, 680, 793, 832, 930, 1148 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1194, 1226 |
| FaqI | GGGAC | 1 cut(s) | 219 |
| FatI | CATG | 8 cut(s) | 138, 255, 442, 676, 789, 828, 926, 1144 |
| FauI | CCCGC | 2 cut(s) | 719, 1149 |
| FblI | GTMKAC | 1 cut(s) | 1149 |
| Fnu4HI | GCNGC | 6 cut(s) | 56, 518, 663, 807, 872, 1208 |
| FokI | GGATG | 3 cut(s) | 74, 324, 494 |
| FriOI | GRGCYC | 1 cut(s) | 771 |
| Fsp4HI | GCNGC | 6 cut(s) | 56, 518, 663, 807, 872, 1208 |
| FspBI | CTAG | 1 cut(s) | 488 |
| GluI | GCNGC | 6 cut(s) | 56, 518, 663, 807, 872, 1208 |
| HaeIII | GGCC | 5 cut(s) | 520, 564, 657, 729, 740 |
| HapII | CCGG | 2 cut(s) | 1216, 1248 |
| Hin1II | CATG | 8 cut(s) | 142, 259, 446, 680, 793, 832, 930, 1148 |
| HincII | GTYRAC | 1 cut(s) | 616 |
| HindII | GTYRAC | 1 cut(s) | 616 |
| HindIII | AAGCTT | 4 cut(s) | 260, 383, 1028, 1297 |
| HinfI | GANTC | 3 cut(s) | 11, 69, 1162 |
| HpaII | CCGG | 2 cut(s) | 1216, 1248 |
| HphI | GGTGA | 5 cut(s) | 396, 476, 897, 1099, 1276 |
| Hpy166II | GTNNAC | 4 cut(s) | 500, 616, 1150, 1267 |
| Hpy188III | TCNNGA | 9 cut(s) | 26, 73, 139, 278, 341, 1126, 1159, 1166, 1280 |
| Hpy8I | GTNNAC | 4 cut(s) | 500, 616, 1150, 1267 |
| Hpy99I | CGWCG | 1 cut(s) | 1160 |
| HpyAV | CCTTC | 4 cut(s) | 76, 442, 928, 1196 |
| HpyCH4III | ACNGT | 3 cut(s) | 110, 762, 1184 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 395, 604, 857, 871, 1076 |
| HpyF3I | CTNAG | 8 cut(s) | 507, 867, 1012, 1020, 1052, 1233, 1271, 1308 |
| Hsp92II | CATG | 8 cut(s) | 142, 259, 446, 680, 793, 832, 930, 1148 |
| Kzo9I | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| LmnI | GCTCC | 1 cut(s) | 169 |
| Lsp1109I | GCAGC | 5 cut(s) | 42, 674, 793, 883, 1219 |
| LweI | GCATC | 2 cut(s) | 346, 640 |
| MaeI | CTAG | 1 cut(s) | 488 |
| MaeIII | GTNAC | 3 cut(s) | 304, 418, 1286 |
| MalI | GATC | 7 cut(s) | 356, 528, 750, 846, 901, 925, 1223 |
| MbiI | CCGCTC | 1 cut(s) | 517 |
| MboI | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| MboII | GAAGA | 4 cut(s) | 122, 374, 548, 894 |
| MflI | RGATCY | 1 cut(s) | 899 |
| MhlI | GDGCHC | 1 cut(s) | 771 |
| MlsI | TGGCCA | 1 cut(s) | 729 |
| MluCI | AATT | 6 cut(s) | 21, 49, 231, 467, 684, 704 |
| MluNI | TGGCCA | 1 cut(s) | 729 |
| MlyI | GAGTC | 1 cut(s) | 5 |
| Mox20I | TGGCCA | 1 cut(s) | 729 |
| Mph1103I | ATGCAT | 2 cut(s) | 230, 339 |
| MscI | TGGCCA | 1 cut(s) | 729 |
| MseI | TTAA | 6 cut(s) | 264, 318, 381, 723, 794, 1295 |
| MslI | CAYNNNNRTG | 2 cut(s) | 233, 342 |
| Msp20I | TGGCCA | 1 cut(s) | 729 |
| MspI | CCGG | 2 cut(s) | 1216, 1248 |
| MspR9I | CCNGG | 2 cut(s) | 834, 897 |
| Mva1269I | GAATGC | 2 cut(s) | 230, 1227 |
| MvaI | CCWGG | 2 cut(s) | 834, 897 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 395, 604, 857, 871, 1076 |
| NdeII | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| NlaIII | CATG | 8 cut(s) | 142, 259, 446, 680, 793, 832, 930, 1148 |
| NlaIV | GGNNCC | 2 cut(s) | 241, 394 |
| NmuCI | GTSAC | 2 cut(s) | 418, 1286 |
| NsiI | ATGCAT | 2 cut(s) | 230, 339 |
| NspI | RCATGY | 1 cut(s) | 1148 |
| PagI | TCATGA | 1 cut(s) | 138 |
| PaqCI | CACCTGC | 1 cut(s) | 415 |
| PceI | AGGCCT | 1 cut(s) | 657 |
| PctI | GAATGC | 2 cut(s) | 230, 1227 |
| PfeI | GAWTC | 2 cut(s) | 69, 1162 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 736 |
| PinAI | ACCGGT | 1 cut(s) | 1247 |
| PkrI | GCNGC | 6 cut(s) | 57, 519, 664, 808, 873, 1209 |
| PleI | GAGTC | 1 cut(s) | 5 |
| PpsI | GAGTC | 1 cut(s) | 5 |
| PshBI | ATTAAT | 1 cut(s) | 723 |
| PsiI | TTATAA | 1 cut(s) | 912 |
| Psp6I | CCWGG | 2 cut(s) | 832, 895 |
| PspGI | CCWGG | 2 cut(s) | 832, 895 |
| PspN4I | GGNNCC | 2 cut(s) | 241, 394 |
| PspPI | GGNCC | 1 cut(s) | 562 |
| PstI | CTGCAG | 3 cut(s) | 60, 600, 811 |
| PstNI | CAGNNNCTG | 1 cut(s) | 877 |
| PsuI | RGATCY | 1 cut(s) | 899 |
| RsaI | GTAC | 4 cut(s) | 92, 486, 931, 1010 |
| RsaNI | GTAC | 4 cut(s) | 91, 485, 930, 1009 |
| RseI | CAYNNNNRTG | 2 cut(s) | 233, 342 |
| SaqAI | TTAA | 6 cut(s) | 264, 318, 381, 723, 794, 1295 |
| SatI | GCNGC | 6 cut(s) | 56, 518, 663, 807, 872, 1208 |
| Sau3AI | GATC | 7 cut(s) | 354, 526, 748, 844, 899, 923, 1221 |
| Sau96I | GGNCC | 1 cut(s) | 562 |
| ScaI | AGTACT | 1 cut(s) | 1010 |
| SchI | GAGTC | 1 cut(s) | 5 |
| ScrFI | CCNGG | 2 cut(s) | 834, 897 |
| SduI | GDGCHC | 1 cut(s) | 771 |
| SfaNI | GCATC | 2 cut(s) | 346, 640 |
| SfcI | CTRYAG | 4 cut(s) | 56, 530, 596, 807 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 233, 342 |
| Sse9I | AATT | 6 cut(s) | 21, 49, 231, 467, 684, 704 |
| SseBI | AGGCCT | 1 cut(s) | 657 |
| SsiI | CCGC | 6 cut(s) | 311, 396, 517, 712, 1142, 1262 |
| SspI | AATATT | 1 cut(s) | 287 |
| SspMI | CTAG | 1 cut(s) | 488 |
| StuI | AGGCCT | 1 cut(s) | 657 |
| StyD4I | CCNGG | 2 cut(s) | 832, 895 |
| StyI | CCWWGG | 1 cut(s) | 1000 |
| TaaI | ACNGT | 3 cut(s) | 110, 762, 1184 |
| TaqI | TCGA | 9 cut(s) | 9, 72, 279, 360, 525, 743, 755, 954, 993 |
| TasI | AATT | 6 cut(s) | 21, 49, 231, 467, 684, 704 |
| TatI | WGTACW | 4 cut(s) | 90, 484, 929, 1008 |
| TauI | GCSGC | 1 cut(s) | 520 |
| TfiI | GAWTC | 2 cut(s) | 69, 1162 |
| Tru1I | TTAA | 6 cut(s) | 264, 318, 381, 723, 794, 1295 |
| Tru9I | TTAA | 6 cut(s) | 264, 318, 381, 723, 794, 1295 |
| TscAI | CASTG | 2 cut(s) | 444, 765 |
| TseFI | GTSAC | 2 cut(s) | 418, 1286 |
| TseI | GCWGC | 5 cut(s) | 55, 662, 806, 871, 1207 |
| Tsp45I | GTSAC | 2 cut(s) | 418, 1286 |
| TspDTI | ATGAA | 4 cut(s) | 122, 272, 297, 665 |
| TspRI | CASTG | 2 cut(s) | 444, 765 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 736 |
| VspI | ATTAAT | 1 cut(s) | 723 |
| XapI | RAATTY | 3 cut(s) | 21, 467, 704 |
| XceI | RCATGY | 1 cut(s) | 1148 |
| XmiI | GTMKAC | 1 cut(s) | 1149 |
| XspI | CTAG | 1 cut(s) | 488 |
| ZrmI | AGTACT | 1 cut(s) | 1010 |
| Zsp2I | ATGCAT | 2 cut(s) | 230, 339 |