AT2G42120

dna polymerase delta small

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17563133 .. 17566237
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42120.1

Sequence Viewer

Length: 1326 bp
ATGGAAATCGACTCCGAGAAAATTCACGAAAGGAAGCAATCCGATTACAATTCGCTGCAGGATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGTCAGCAATACAGTCAGATTTACTTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCTCCTACTTGGAAATCTCATTTGCCTGTGTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCATAATTGTGGGAACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGGTCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTCGAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCCGCACTTTCACCTGCGATTTATGTGACAGGTGTTGTTGTTGCACTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAGGATGTACTAGAAGCTGGTTTACCACCTCAGATTGAGCGGCCTATCGATCTACAGGAAGATAAATATGTCGTGTTATTGTCGGGCCTTTGTATTGGAAGCAAATCGGCTAATCCCCTGCAGTTTCAGCTTCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTTGCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTTTTGAATTTCCCCGCAAACTCATTAATGGCCAGAACTTGGCCTCGAAAGATCAATCGACACTGTATGAGCCCATCAAAGAGCTTGATATCATGTTAAGCCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACGAATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGATCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATGTCGATAATATCAGATTTCTTGGAACTTCTGGTCAGAACATCGATGACCTTGGCAAGTACTCAGAGGCTAAGAGCAAGCTTGATTTTGTGGAAAGAACGCTGAGGTGGAGACATCTTGCCCCAACTGCACCTAATACACTCGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTGATTGAAACCTGCCCGCATGTCTACTTCGTCGGGAATCAAGATAAATATGACAACCGTTTGATAAAGGGGTCAGAAGGGCAGCTTGTCCGGTTGATCTGCATTCCTAAGTTCTGTGAGACCGGTATTGCTGTTGCGGTGAACCTAAGAAATCTGGAATGTCACACTTTAAGCTTTAGCACTCAGATAAACCAATCATAA

Protein Analysis

441

Amino Acids

49.54

Weight (kDa)

5.72

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_D_N PF18018 35 - 162 1.3e-41 DNA polymerase delta subunit OB-fold domain
DNA_pol_E_B PF04042 183 - 392 5.9e-57 DNA polymerase alpha/epsilon subunit B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
AarI CACCTGC 1 cut(s) 415
Acc36I ACCTGC 2 cut(s) 415, 1145
AccB7I CCANNNNNTGG 1 cut(s) 736
AccBSI CCGCTC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 1149
AciI CCGC 6 cut(s) 311, 396, 517, 712, 1142, 1262
AclWI GGATC 3 cut(s) 349, 839, 907
AcoI YGGCCR 1 cut(s) 727
AcsI RAATTY 3 cut(s) 21, 467, 704
AcuI CTGAAG 1 cut(s) 904
AfaI GTAC 4 cut(s) 92, 486, 931, 1010
AfiI CCNNNNNNNGG 1 cut(s) 736
AgeI ACCGGT 1 cut(s) 1247
AgsI TTSAA 4 cut(s) 212, 250, 704, 1133
AjnI CCWGG 2 cut(s) 832, 895
Alw26I GTCTC 3 cut(s) 1054, 1110, 1238
AlwI GGATC 3 cut(s) 349, 839, 907
AlwNI CAGNNNCTG 1 cut(s) 877
AoxI GGCC 5 cut(s) 518, 562, 655, 727, 738
ApeKI GCWGC 5 cut(s) 55, 662, 806, 871, 1207
ApoI RAATTY 3 cut(s) 21, 467, 704
AseI ATTAAT 1 cut(s) 723
AsiGI ACCGGT 1 cut(s) 1247
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 5 cut(s) 396, 476, 897, 1099, 1276
BalI TGGCCA 1 cut(s) 729
BanII GRGCYC 1 cut(s) 771
BarI GAAGNNNNNNTAC 4 cut(s) 74, 106, 483, 515
BbsI GAAGAC 2 cut(s) 122, 369
BbvCI CCTCAGC 2 cut(s) 867, 1052
BbvI GCAGC 5 cut(s) 42, 674, 793, 883, 1219
BccI CCATC 1 cut(s) 779
BciT130I CCWGG 2 cut(s) 834, 897
BcoDI GTCTC 3 cut(s) 1054, 1110, 1238
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 4 cut(s) 56, 530, 596, 807
BfuAI ACCTGC 2 cut(s) 415, 1145
BisI GCNGC 6 cut(s) 56, 518, 663, 807, 872, 1208
BlsI GCNGC 6 cut(s) 57, 519, 664, 808, 873, 1209
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 2 cut(s) 834, 897
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 2 cut(s) 241, 394
BmrFI CCNGG 2 cut(s) 834, 897
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 2 cut(s) 346, 640
BmuI ACTGGG 1 cut(s) 636
BpiI GAAGAC 2 cut(s) 122, 369
Bpu10I CCTNAGC 2 cut(s) 867, 1052
Bsa29I ATCGAT 2 cut(s) 525, 993
BsaBI GATNNNNATC 1 cut(s) 348
BsaI GGTCTC 2 cut(s) 1110, 1238
BsaJI CCNNGG 2 cut(s) 895, 1000
BsaWI WCCGGW 2 cut(s) 1215, 1247
BsaXI ACNNNNNCTCC 2 cut(s) 804, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse118I RCCGGY 1 cut(s) 1247
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 860
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 2 cut(s) 834, 897
BseCI ATCGAT 2 cut(s) 525, 993
BseDI CCNNGG 2 cut(s) 895, 1000
BseGI GGATG 3 cut(s) 67, 337, 487
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMI GCAATG 1 cut(s) 860
BseMII CTCAG 5 cut(s) 521, 881, 1026, 1043, 1322
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 1 cut(s) 659
BseXI GCAGC 5 cut(s) 42, 674, 793, 883, 1219
BsgI GTGCAG 1 cut(s) 1062
BshFI GGCC 5 cut(s) 520, 564, 657, 729, 740
BshTI ACCGGT 1 cut(s) 1247
BshVI ATCGAT 2 cut(s) 525, 993
BsiSI CCGG 2 cut(s) 1216, 1248
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 3 cut(s) 1054, 1110, 1238
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 2 cut(s) 230, 1227
BsnI GGCC 5 cut(s) 520, 564, 657, 729, 740
Bso31I GGTCTC 2 cut(s) 1110, 1238
Bsp1286I GDGCHC 1 cut(s) 771
Bsp1407I TGTACA 2 cut(s) 90, 929
Bsp143I GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
BspACI CCGC 6 cut(s) 311, 396, 517, 712, 1142, 1262
BspANI GGCC 5 cut(s) 520, 564, 657, 729, 740
BspCNI CTCAG 5 cut(s) 520, 880, 1025, 1044, 1321
BspDI ATCGAT 2 cut(s) 525, 993
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 241, 394
BspMAI CTGCAG 3 cut(s) 60, 600, 811
BspMI ACCTGC 2 cut(s) 415, 1145
BspPI GGATC 3 cut(s) 349, 839, 907
BspTNI GGTCTC 2 cut(s) 1110, 1238
BsrBI CCGCTC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 860
BsrFI RCCGGY 1 cut(s) 1247
BsrGI TGTACA 2 cut(s) 90, 929
BsrI ACTGG 1 cut(s) 631
BssAI RCCGGY 1 cut(s) 1247
BssECI CCNNGG 2 cut(s) 895, 1000
BssMI GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
BssT1I CCWWGG 1 cut(s) 1000
Bst2UI CCWGG 2 cut(s) 834, 897
Bst4CI ACNGT 3 cut(s) 110, 762, 1184
BstAUI TGTACA 2 cut(s) 90, 929
BstC8I GCNNGC 3 cut(s) 387, 1028, 1142
BstDEI CTNAG 8 cut(s) 507, 867, 1012, 1020, 1052, 1233, 1271, 1308
BstF5I GGATG 3 cut(s) 67, 337, 487
BstKTI GATC 7 cut(s) 357, 529, 751, 847, 902, 926, 1224
BstMAI GTCTC 3 cut(s) 1054, 1110, 1238
BstMBI GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
BstMWI GCNNNNNNNGC 5 cut(s) 395, 604, 857, 871, 1076
BstNI CCWGG 2 cut(s) 834, 897
BstNSI RCATGY 1 cut(s) 1148
BstSCI CCNGG 2 cut(s) 832, 895
BstSFI CTRYAG 4 cut(s) 56, 530, 596, 807
BstV1I GCAGC 5 cut(s) 42, 674, 793, 883, 1219
BstV2I GAAGAC 2 cut(s) 122, 369
BstX2I RGATCY 1 cut(s) 899
BstXI CCANNNNNNTGG 1 cut(s) 626
BstYI RGATCY 1 cut(s) 899
Bsu15I ATCGAT 2 cut(s) 525, 993
BsuRI GGCC 5 cut(s) 520, 564, 657, 729, 740
BsuTUI ATCGAT 2 cut(s) 525, 993
BtsCI GGATG 3 cut(s) 67, 337, 487
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 437, 758
BveI ACCTGC 2 cut(s) 415, 1145
Cac8I GCNNGC 3 cut(s) 387, 1028, 1142
CaiI CAGNNNCTG 1 cut(s) 877
CciI TCATGA 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 1247
Cfr13I GGNCC 1 cut(s) 562
ClaI ATCGAT 2 cut(s) 525, 993
Csp6I GTAC 4 cut(s) 91, 485, 930, 1009
CspAI ACCGGT 1 cut(s) 1247
CviAII CATG 8 cut(s) 139, 256, 443, 677, 790, 829, 927, 1145
CviQI GTAC 4 cut(s) 91, 485, 930, 1009
DdeI CTNAG 8 cut(s) 507, 867, 1012, 1020, 1052, 1233, 1271, 1308
DpnI GATC 7 cut(s) 356, 528, 750, 846, 901, 925, 1223
DpnII GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
EaeI YGGCCR 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 1000
Eco147I AGGCCT 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 771
Eco31I GGTCTC 2 cut(s) 1110, 1238
Eco32I GATATC 2 cut(s) 787, 826
Eco57I CTGAAG 1 cut(s) 904
EcoRI GAATTC 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 832, 895
EcoRV GATATC 2 cut(s) 787, 826
EcoT14I CCWWGG 1 cut(s) 1000
EcoT22I ATGCAT 2 cut(s) 230, 339
EcoT38I GRGCYC 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 1000
FaeI CATG 8 cut(s) 142, 259, 446, 680, 793, 832, 930, 1148
FalI AAGNNNNNCTT 2 cut(s) 1194, 1226
FaqI GGGAC 1 cut(s) 219
FatI CATG 8 cut(s) 138, 255, 442, 676, 789, 828, 926, 1144
FauI CCCGC 2 cut(s) 719, 1149
FblI GTMKAC 1 cut(s) 1149
Fnu4HI GCNGC 6 cut(s) 56, 518, 663, 807, 872, 1208
FokI GGATG 3 cut(s) 74, 324, 494
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 6 cut(s) 56, 518, 663, 807, 872, 1208
FspBI CTAG 1 cut(s) 488
GluI GCNGC 6 cut(s) 56, 518, 663, 807, 872, 1208
HaeIII GGCC 5 cut(s) 520, 564, 657, 729, 740
HapII CCGG 2 cut(s) 1216, 1248
Hin1II CATG 8 cut(s) 142, 259, 446, 680, 793, 832, 930, 1148
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 4 cut(s) 260, 383, 1028, 1297
HinfI GANTC 3 cut(s) 11, 69, 1162
HpaII CCGG 2 cut(s) 1216, 1248
HphI GGTGA 5 cut(s) 396, 476, 897, 1099, 1276
Hpy166II GTNNAC 4 cut(s) 500, 616, 1150, 1267
Hpy188III TCNNGA 9 cut(s) 26, 73, 139, 278, 341, 1126, 1159, 1166, 1280
Hpy8I GTNNAC 4 cut(s) 500, 616, 1150, 1267
Hpy99I CGWCG 1 cut(s) 1160
HpyAV CCTTC 4 cut(s) 76, 442, 928, 1196
HpyCH4III ACNGT 3 cut(s) 110, 762, 1184
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 604, 857, 871, 1076
HpyF3I CTNAG 8 cut(s) 507, 867, 1012, 1020, 1052, 1233, 1271, 1308
Hsp92II CATG 8 cut(s) 142, 259, 446, 680, 793, 832, 930, 1148
Kzo9I GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 5 cut(s) 42, 674, 793, 883, 1219
LweI GCATC 2 cut(s) 346, 640
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 3 cut(s) 304, 418, 1286
MalI GATC 7 cut(s) 356, 528, 750, 846, 901, 925, 1223
MbiI CCGCTC 1 cut(s) 517
MboI GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
MboII GAAGA 4 cut(s) 122, 374, 548, 894
MflI RGATCY 1 cut(s) 899
MhlI GDGCHC 1 cut(s) 771
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 6 cut(s) 21, 49, 231, 467, 684, 704
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 729
Mph1103I ATGCAT 2 cut(s) 230, 339
MscI TGGCCA 1 cut(s) 729
MseI TTAA 6 cut(s) 264, 318, 381, 723, 794, 1295
MslI CAYNNNNRTG 2 cut(s) 233, 342
Msp20I TGGCCA 1 cut(s) 729
MspI CCGG 2 cut(s) 1216, 1248
MspR9I CCNGG 2 cut(s) 834, 897
Mva1269I GAATGC 2 cut(s) 230, 1227
MvaI CCWGG 2 cut(s) 834, 897
MwoI GCNNNNNNNGC 5 cut(s) 395, 604, 857, 871, 1076
NdeII GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
NlaIII CATG 8 cut(s) 142, 259, 446, 680, 793, 832, 930, 1148
NlaIV GGNNCC 2 cut(s) 241, 394
NmuCI GTSAC 2 cut(s) 418, 1286
NsiI ATGCAT 2 cut(s) 230, 339
NspI RCATGY 1 cut(s) 1148
PagI TCATGA 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 415
PceI AGGCCT 1 cut(s) 657
PctI GAATGC 2 cut(s) 230, 1227
PfeI GAWTC 2 cut(s) 69, 1162
PflMI CCANNNNNTGG 1 cut(s) 736
PinAI ACCGGT 1 cut(s) 1247
PkrI GCNGC 6 cut(s) 57, 519, 664, 808, 873, 1209
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 723
PsiI TTATAA 1 cut(s) 912
Psp6I CCWGG 2 cut(s) 832, 895
PspGI CCWGG 2 cut(s) 832, 895
PspN4I GGNNCC 2 cut(s) 241, 394
PspPI GGNCC 1 cut(s) 562
PstI CTGCAG 3 cut(s) 60, 600, 811
PstNI CAGNNNCTG 1 cut(s) 877
PsuI RGATCY 1 cut(s) 899
RsaI GTAC 4 cut(s) 92, 486, 931, 1010
RsaNI GTAC 4 cut(s) 91, 485, 930, 1009
RseI CAYNNNNRTG 2 cut(s) 233, 342
SaqAI TTAA 6 cut(s) 264, 318, 381, 723, 794, 1295
SatI GCNGC 6 cut(s) 56, 518, 663, 807, 872, 1208
Sau3AI GATC 7 cut(s) 354, 526, 748, 844, 899, 923, 1221
Sau96I GGNCC 1 cut(s) 562
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 2 cut(s) 834, 897
SduI GDGCHC 1 cut(s) 771
SfaNI GCATC 2 cut(s) 346, 640
SfcI CTRYAG 4 cut(s) 56, 530, 596, 807
SmiMI CAYNNNNRTG 2 cut(s) 233, 342
Sse9I AATT 6 cut(s) 21, 49, 231, 467, 684, 704
SseBI AGGCCT 1 cut(s) 657
SsiI CCGC 6 cut(s) 311, 396, 517, 712, 1142, 1262
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 488
StuI AGGCCT 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 832, 895
StyI CCWWGG 1 cut(s) 1000
TaaI ACNGT 3 cut(s) 110, 762, 1184
TaqI TCGA 9 cut(s) 9, 72, 279, 360, 525, 743, 755, 954, 993
TasI AATT 6 cut(s) 21, 49, 231, 467, 684, 704
TatI WGTACW 4 cut(s) 90, 484, 929, 1008
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 2 cut(s) 69, 1162
Tru1I TTAA 6 cut(s) 264, 318, 381, 723, 794, 1295
Tru9I TTAA 6 cut(s) 264, 318, 381, 723, 794, 1295
TscAI CASTG 2 cut(s) 444, 765
TseFI GTSAC 2 cut(s) 418, 1286
TseI GCWGC 5 cut(s) 55, 662, 806, 871, 1207
Tsp45I GTSAC 2 cut(s) 418, 1286
TspDTI ATGAA 4 cut(s) 122, 272, 297, 665
TspRI CASTG 2 cut(s) 444, 765
Van91I CCANNNNNTGG 1 cut(s) 736
VspI ATTAAT 1 cut(s) 723
XapI RAATTY 3 cut(s) 21, 467, 704
XceI RCATGY 1 cut(s) 1148
XmiI GTMKAC 1 cut(s) 1149
XspI CTAG 1 cut(s) 488
ZrmI AGTACT 1 cut(s) 1010
Zsp2I ATGCAT 2 cut(s) 230, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.