Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009156

Physical Location & Seq

Genomic Coordinates Reverse (-)

15076645 .. 15091746

Gene Structure 15102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGGTTCAAGAAGCCGAGTAAAATCCAGGCAATTACATTGCCTATGATTTTGACGACTCCACACAAAGACTTGGTTGCTCAGGCTCACAATGGCTCAGGGAAGACTACTTGTTTCGTGCTCGGGATGCTCAGCCGTGTCGATCCGAATGTGAAAGCTCCTCAGGCTCTCTGCATTTGTCCCACCAGAGAATTGGCACTTCAGAATGCGGAGGTTATTCGTAAGATGGGGAAGTACACAGGGATAAATGTAGAGTGTGCTGTCCCAATGGAGAAAGAAAAATCTAAACCAGTGAAGTACCGGCCTCTGGTATCAGCACAAATTGTGATTGGAACACCTGGTACAGTTAAGAACTTGATGTCATACAAGAAGCTGGGTGTAAGCGGTGTGAAGATTCTTGTTTTCGATGAAGCTGATCACATGCTGGCTGAGGATGGATTTAAAGATGATTCTTTAAGGATAAAAAAGGAGATAGAGAAATTTGACACTCACTGCCAGGTGCTCCTGTTTTCTGCTACATTCGATGAAACAGTCAGAAATTTCATCTCAAGGGTGGTGAAGGACAAGAATGAACTATTTGTTAAGAAAGAAGAGCTATCTTTGGCAGCTGTGAAGCAGTACAAGGTCTACTGCCCTGATGAACTAACCAAAATTGATGTGATCAAAACCAAGATATTCGACCTAGGGGAGAACATTGGACAGCGAATCATTTTTGTAGGGTCAAAAGCTAGTGCAAGAATGTTGCATAAACAACTTCATGAGGATGGTTATGCAGTTACAAATGTTCATGGTGCCCTCACTCCTGAACATAGAGACAAGACGATTAAAGAATTCAGAGAGGGTTACACCCAAGTTCTTATTGCAACTGACATGCTTGCTCGAGGCTTTGACAGCCAGCAGGTCAACTGTGTTGTCAATTATGATCTTCCAATAAAGTATCAAGCTTGGTCTAGGAAGCAAGCAGCTCCAGAGCCTGATTATGAGGTGTACTTGCATAGATGTGGTCGGGCAGGGCGTTTTGGCCGCAAGGGAGCTGTGTTTAACTTGCTTTGCCATGATTCTGATCAACAACTCATGGGAAAAATTGAGCAGCATTATAGCATTCAAGTACCAGAGGTTAACATAAGTGAAGAAGCTTTTGAAGATGCTCTCAAGTTAGCGGGCTTGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022616 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0034645 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_E_B

Protein Analysis

391

Amino Acids

43.96

Weight (kDa)

8.76

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	8 - 180	2e-37	DEAD/DEAH box helicase
ResIII	PF04851	20 - 175	1.4e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	224 - 341	4.3e-24	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42120 AT2G42120
fragaria_vesca	FvH4_6g22330 FvH4_6g22330
malus_domestica	MD12G1057200.v1.1 MD14G1057800.v1.1
prunus_persica	Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1
pyrus_communis	pycom14g04690
rosa_chinensis	RchiOBHm_Chr3g0479691
rosa_multiflora	Rmu_sc0003755.1_g000006 Rmu_sc0031395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402060
rosa_rugosa	Rorug03G0177400 Rorug03G0177500 Rorug03G0177600
rosa_samantha	Rh3AG228200 Rh3BG261400 Rh3CG258500 Rh3DG254700
rosa_wichuraiana	Rw3G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	889
AccB1I	GGYRCC	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	4 cut(s)	209, 384, 1024, 1160
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	1021
AcsI	RAATTY	3 cut(s)	479, 538, 830
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	6 cut(s)	236, 299, 343, 620, 989, 1110
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	4 cut(s)	10, 1106, 1142, 1168
AjnI	CCWGG	3 cut(s)	27, 337, 495
Alw21I	GWGCWC	2 cut(s)	123, 504
Alw26I	GTCTC	1 cut(s)	807
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	974
Ama87I	CYCGRG	2 cut(s)	122, 879
AoxI	GGCC	2 cut(s)	302, 1021
ApeKI	GCWGC	3 cut(s)	605, 962, 1090
ApoI	RAATTY	3 cut(s)	479, 538, 830
AspA2I	CCTAGG	1 cut(s)	682
AsuHPI	GGTGA	1 cut(s)	568
AvaI	CYCGRG	2 cut(s)	122, 879
AvrII	CCTAGG	1 cut(s)	682
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	796
BanI	GGYRCC	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	123, 504
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	617, 974, 1102
BccI	CCATC	3 cut(s)	220, 428, 758
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	3 cut(s)	29, 339, 497
BclI	TGATCA	3 cut(s)	415, 660, 1063
BcoDI	GTCTC	1 cut(s)	807
BfaI	CTAG	3 cut(s)	683, 729, 951
BfuAI	ACCTGC	1 cut(s)	889
BisI	GCNGC	4 cut(s)	606, 963, 1024, 1091
BlnI	CCTAGG	1 cut(s)	682
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	4 cut(s)	607, 964, 1025, 1092
Bme1390I	CCNGG	3 cut(s)	29, 339, 497
BmeT110I	CYCGRG	2 cut(s)	122, 879
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	3 cut(s)	29, 339, 497
BmsI	GCATC	2 cut(s)	117, 1135
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	951
Bpu10I	CCTNAGC	3 cut(s)	81, 97, 429
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	532, 1136
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaJI	CCNNGG	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	3 cut(s)	29, 339, 497
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	3 cut(s)	132, 439, 769
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	5 cut(s)	95, 111, 145, 176, 420
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	3 cut(s)	617, 974, 1102
BseYI	CCCAGC	1 cut(s)	373
BshFI	GGCC	2 cut(s)	304, 1023
BshNI	GGYRCC	1 cut(s)	791
BsiHKAI	GWGCWC	2 cut(s)	123, 504
BsiHKCI	CYCGRG	2 cut(s)	122, 879
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	2 cut(s)	165, 248
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	807
BsmFI	GGGAC	2 cut(s)	165, 248
BsmI	GAATGC	2 cut(s)	211, 1101
BsnI	GGCC	2 cut(s)	304, 1023
BsoBI	CYCGRG	2 cut(s)	122, 879
Bsp1286I	GDGCHC	3 cut(s)	123, 504, 796
Bsp143I	GATC	5 cut(s)	142, 415, 660, 922, 1063
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	4 cut(s)	209, 384, 1024, 1160
BspANI	GGCC	2 cut(s)	304, 1023
BspCNI	CTCAG	5 cut(s)	94, 110, 144, 175, 421
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	889
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	585
BspT107I	GGYRCC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	5 cut(s)	142, 415, 660, 922, 1063
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	3 cut(s)	29, 339, 497
Bst4CI	ACNGT	3 cut(s)	346, 532, 908
Bst6I	CTCTTC	1 cut(s)	585
BstC8I	GCNNGC	5 cut(s)	426, 876, 896, 960, 1162
BstDEI	CTNAG	5 cut(s)	81, 97, 131, 162, 429
BstF5I	GGATG	3 cut(s)	132, 439, 769
BstKTI	GATC	5 cut(s)	145, 418, 663, 925, 1066
BstMAI	GTCTC	1 cut(s)	807
BstMBI	GATC	5 cut(s)	142, 415, 660, 922, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 164, 891
BstNI	CCWGG	3 cut(s)	29, 339, 497
BstNSI	RCATGY	2 cut(s)	424, 874
BstSCI	CCNGG	3 cut(s)	27, 337, 495
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	3 cut(s)	617, 974, 1102
BstV2I	GAAGAC	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	304, 1023
BtsCI	GGATG	3 cut(s)	132, 439, 769
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	297, 490
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	5 cut(s)	426, 876, 896, 960, 1162
CaiI	CAGNNNCTG	1 cut(s)	974
CciI	TCATGA	1 cut(s)	757
Cfr10I	RCCGGY	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	337
Csp6I	GTAC	6 cut(s)	235, 298, 342, 619, 988, 1109
CviAII	CATG	6 cut(s)	421, 758, 788, 871, 1055, 1075
CviQI	GTAC	6 cut(s)	235, 298, 342, 619, 988, 1109
DdeI	CTNAG	5 cut(s)	81, 97, 131, 162, 429
DpnI	GATC	5 cut(s)	144, 417, 662, 924, 1065
DpnII	GATC	5 cut(s)	142, 415, 660, 922, 1063
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	1021
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	162
Eco88I	CYCGRG	2 cut(s)	122, 879
EcoRI	GAATTC	1 cut(s)	830
EcoRII	CCWGG	3 cut(s)	27, 337, 495
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	6 cut(s)	424, 761, 791, 874, 1058, 1078
FaqI	GGGAC	2 cut(s)	165, 248
FatI	CATG	6 cut(s)	420, 757, 787, 870, 1054, 1074
FauI	CCCGC	1 cut(s)	1153
FbaI	TGATCA	3 cut(s)	415, 660, 1063
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	606, 963, 1024, 1091
FokI	GGATG	3 cut(s)	139, 446, 776
Fsp4HI	GCNGC	4 cut(s)	606, 963, 1024, 1091
FspBI	CTAG	3 cut(s)	683, 729, 951
GluI	GCNGC	4 cut(s)	606, 963, 1024, 1091
GsaI	CCCAGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	951
HaeIII	GGCC	2 cut(s)	304, 1023
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	6 cut(s)	424, 761, 791, 874, 1058, 1078
HincII	GTYRAC	2 cut(s)	904, 1120
HindII	GTYRAC	2 cut(s)	904, 1120
HindIII	AAGCTT	2 cut(s)	942, 1134
HinfI	GANTC	5 cut(s)	58, 394, 449, 705, 1058
HpaI	GTTAAC	1 cut(s)	1120
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	5 cut(s)	237, 628, 904, 988, 1120
Hpy188I	TCNGA	5 cut(s)	147, 204, 536, 836, 1063
Hpy188III	TCNNGA	5 cut(s)	10, 124, 758, 803, 968
Hpy8I	GTNNAC	5 cut(s)	237, 628, 904, 988, 1120
HpyAV	CCTTC	2 cut(s)	553, 1162
HpyCH4III	ACNGT	3 cut(s)	346, 532, 908
HpyCH4V	TGCA	6 cut(s)	174, 734, 745, 773, 863, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 164, 891
HpyF3I	CTNAG	5 cut(s)	81, 97, 131, 162, 429
Hsp92II	CATG	6 cut(s)	424, 761, 791, 874, 1058, 1078
Ksp22I	TGATCA	3 cut(s)	415, 660, 1063
KspAI	GTTAAC	1 cut(s)	1120
Kzo9I	GATC	5 cut(s)	142, 415, 660, 922, 1063
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	4 cut(s)	163, 507, 970, 1031
Lsp1109I	GCAGC	3 cut(s)	617, 974, 1102
LweI	GCATC	2 cut(s)	117, 1135
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	3 cut(s)	683, 729, 951
MaeIII	GTNAC	2 cut(s)	775, 842
MalI	GATC	5 cut(s)	144, 417, 662, 924, 1065
MboI	GATC	5 cut(s)	142, 415, 660, 922, 1063
MboII	GAAGA	6 cut(s)	115, 403, 602, 917, 1142, 1154
MhlI	GDGCHC	3 cut(s)	123, 504, 796
MluCI	AATT	9 cut(s)	33, 191, 321, 479, 538, 651, 830, 916, 1083
MlyI	GAGTC	1 cut(s)	52
MseI	TTAA	7 cut(s)	348, 441, 455, 582, 825, 1041, 1119
MslI	CAYNNNNRTG	2 cut(s)	762, 999
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	3 cut(s)	29, 339, 497
Mva1269I	GAATGC	2 cut(s)	211, 1101
MvaI	CCWGG	3 cut(s)	29, 339, 497
MwoI	GCNNNNNNNGC	3 cut(s)	127, 164, 891
NdeII	GATC	5 cut(s)	142, 415, 660, 922, 1063
NlaIII	CATG	6 cut(s)	424, 761, 791, 874, 1058, 1078
NlaIV	GGNNCC	1 cut(s)	793
NmeAIII	GCCGAG	1 cut(s)	42
NspI	RCATGY	2 cut(s)	424, 874
PaeR7I	CTCGAG	1 cut(s)	879
PagI	TCATGA	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PctI	GAATGC	2 cut(s)	211, 1101
PfeI	GAWTC	4 cut(s)	394, 449, 705, 1058
PkrI	GCNGC	4 cut(s)	607, 964, 1025, 1092
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp6I	CCWGG	3 cut(s)	27, 337, 495
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	3 cut(s)	27, 337, 495
PspN4I	GGNNCC	1 cut(s)	793
PspXI	VCTCGAGB	1 cut(s)	879
PsrI	GAACNNNNNNTAC	2 cut(s)	325, 357
PstNI	CAGNNNCTG	1 cut(s)	974
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	6 cut(s)	236, 299, 343, 620, 989, 1110
RsaNI	GTAC	6 cut(s)	235, 298, 342, 619, 988, 1109
RseI	CAYNNNNRTG	2 cut(s)	762, 999
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	7 cut(s)	348, 441, 455, 582, 825, 1041, 1119
SatI	GCNGC	4 cut(s)	606, 963, 1024, 1091
Sau3AI	GATC	5 cut(s)	142, 415, 660, 922, 1063
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	29, 339, 497
SduI	GDGCHC	3 cut(s)	123, 504, 796
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	117, 1135
Sfr274I	CTCGAG	1 cut(s)	879
SlaI	CTCGAG	1 cut(s)	879
SmiMI	CAYNNNNRTG	2 cut(s)	762, 999
SmlI	CTYRAG	3 cut(s)	547, 879, 1151
SmoI	CTYRAG	3 cut(s)	547, 879, 1151
Sse9I	AATT	9 cut(s)	33, 191, 321, 479, 538, 651, 830, 916, 1083
SsiI	CCGC	4 cut(s)	209, 384, 1024, 1160
SspMI	CTAG	3 cut(s)	683, 729, 951
StyD4I	CCNGG	3 cut(s)	27, 337, 495
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	3 cut(s)	346, 532, 908
TaqI	TCGA	5 cut(s)	141, 405, 522, 678, 880
TasI	AATT	9 cut(s)	33, 191, 321, 479, 538, 651, 830, 916, 1083
TatI	WGTACW	3 cut(s)	234, 618, 987
TauI	GCSGC	1 cut(s)	1026
TfiI	GAWTC	4 cut(s)	394, 449, 705, 1058
Tru1I	TTAA	7 cut(s)	348, 441, 455, 582, 825, 1041, 1119
Tru9I	TTAA	7 cut(s)	348, 441, 455, 582, 825, 1041, 1119
TscAI	CASTG	2 cut(s)	297, 497
TseI	GCWGC	3 cut(s)	605, 962, 1090
TspDTI	ATGAA	7 cut(s)	423, 532, 540, 585, 654, 746, 776
TspRI	CASTG	2 cut(s)	297, 497
XapI	RAATTY	3 cut(s)	479, 538, 830
XceI	RCATGY	2 cut(s)	424, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	879
XmaJI	CCTAGG	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	3 cut(s)	683, 729, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.