Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009156

Physical Location & Seq

Genomic Coordinates Reverse (-)

4401795 .. 4404231

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAGCCATGGAAATCGATTCGGAGAAGAACCTCCACAGAAAGCATTCCACCTACAAATTGCTGGACGAGAGGTTTGAGATTCAAAAGGAAATGTACAGGGGTCAACAGTACAGCCAAATATACTTCGCCCGCCTCCATATGATGAGGACCCTCCTCTATTCCCTTGTCCCTAACTGGAAACCCCATTTGCCAGTTTGCAGAGTTTTGGGATTGGAAAGGGACAAGGAATGCATCATTGTTGGAACCCTCTACAAGCGCATGAAACTCAAGCCTTGTGTTCTTGATGAATACTCTAAGACGAGAACTGTGACGCCACTTGTCAAGCTTTATAATTTTGTGCACCCAGATGACCATCTGATTTTCGAAGATGAAAGTGGAAGAGTTAAGCTTTCTGGGAATGTGCTTTCACTTTCTGTGACAATAGGAATAGCTGGGAACACAGAAGACATCCGGGCTCACTCCGGCATTTGGCATCACACCAAAGGGACTATTGTTGGTTTACATGGAAAGGAGACTGATGGCGGTGACTTCTTAGTCCTAGATGTTCTTGAAGCTGGATTACCACCCCAGATAGAGTTGCCACTTAAATCAAGAGAAGGCAAATATGTTGTTTTTGTATCTGGACTTCGTGTTGGAAGCAGCTCTTTAAACCCTCTCCAGTTTCAGCTTTTTGTTGATCATATAACAGGACTTCGTGTTGGAAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022616 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0034645 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_E_B

Protein Analysis

238

Amino Acids

27.06

Weight (kDa)

8.65

Isoelectric Point (pI)

21.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_D_N	PF18018	37 - 183	3.3e-32	DNA polymerase delta subunit OB-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42120 AT2G42120
fragaria_vesca	FvH4_6g22330 FvH4_6g22330
malus_domestica	MD12G1057200.v1.1 MD14G1057800.v1.1
prunus_persica	Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1
pyrus_communis	pycom14g04690
rosa_chinensis	RchiOBHm_Chr3g0479691
rosa_multiflora	Rmu_sc0003755.1_g000006 Rmu_sc0031395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402060
rosa_rugosa	Rorug03G0177400 Rorug03G0177500 Rorug03G0177600
rosa_samantha	Rh3AG228200 Rh3BG261400 Rh3CG258500 Rh3DG254700
rosa_wichuraiana	Rw3G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AasI	GACNNNNNNGTC	1 cut(s)	536
AciI	CCGC	2 cut(s)	133, 525
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	98, 113
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	2 cut(s)	86, 554
AluBI	AGCT	6 cut(s)	328, 391, 434, 557, 645, 670
AluI	AGCT	6 cut(s)	328, 391, 434, 557, 645, 670
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	509
Alw44I	GTGCAC	1 cut(s)	341
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	642
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp700I	GAANNNNTTC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	539
AsuII	TTCGAA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	460
BarI	GAAGNNNNNNTAC	4 cut(s)	546, 578, 612, 644
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	654
BccI	CCATC	2 cut(s)	363, 515
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	542
BisI	GCNGC	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	644
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	152, 247
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	243, 484
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	644
Bpu14I	TTCGAA	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	3 cut(s)	182, 194, 661
Bse8I	GATNNNNATC	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	450
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseNI	ACTGG	3 cut(s)	182, 194, 661
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	654
BseYI	CCCAGC	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	454, 465
BslFI	GGGAC	3 cut(s)	155, 236, 502
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	3 cut(s)	155, 236, 502
BsmI	GAATGC	2 cut(s)	46, 236
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	345, 460
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	679
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	133, 525
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	152, 247
BspT104I	TTCGAA	1 cut(s)	366
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	182, 194, 661
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	679
BssNI	GRCGYC	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	111, 310
Bst6I	CTCTTC	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	297, 535
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	654
BstV2I	GAAGAC	1 cut(s)	453
Bsu15I	ATCGAT	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	150
ClaI	ATCGAT	1 cut(s)	18
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	97, 112
CviAII	CATG	3 cut(s)	10, 262, 506
CviQI	GTAC	2 cut(s)	97, 112
DdeI	CTNAG	2 cut(s)	297, 535
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
DraI	TTTAAA	1 cut(s)	651
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	13, 265, 509
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FaqI	GGGAC	3 cut(s)	155, 236, 502
FatI	CATG	3 cut(s)	9, 261, 505
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	643
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	1 cut(s)	643
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	1 cut(s)	643
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	644
HapII	CCGG	2 cut(s)	454, 465
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	13, 265, 509
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HindIII	AAGCTT	2 cut(s)	326, 389
HinfI	GANTC	2 cut(s)	20, 82
HpaII	CCGG	2 cut(s)	454, 465
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	3 cut(s)	107, 343, 503
Hpy188I	TCNGA	2 cut(s)	25, 360
Hpy188III	TCNNGA	4 cut(s)	284, 551, 594, 624
Hpy8I	GTNNAC	3 cut(s)	107, 343, 503
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	2 cut(s)	111, 310
HpyCH4V	TGCA	3 cut(s)	201, 234, 343
HpyF3I	CTNAG	2 cut(s)	297, 535
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	3 cut(s)	13, 265, 509
HspAI	GCGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	1 cut(s)	679
Lsp1109I	GCAGC	1 cut(s)	654
LweI	GCATC	2 cut(s)	243, 484
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	310, 418, 527
MalI	GATC	1 cut(s)	681
MboI	GATC	1 cut(s)	679
MboII	GAAGA	4 cut(s)	40, 380, 393, 458
MhlI	GDGCHC	2 cut(s)	345, 460
MluCI	AATT	2 cut(s)	59, 334
MmeI	TCCRAC	3 cut(s)	223, 616, 682
MnlI	CCTC	8 cut(s)	44, 66, 141, 146, 164, 167, 260, 666
Mph1103I	ATGCAT	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	46
MseI	TTAA	4 cut(s)	387, 588, 650, 712
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	2 cut(s)	454, 465
MspR9I	CCNGG	1 cut(s)	455
Mva1269I	GAATGC	2 cut(s)	46, 236
NciI	CCSGG	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	3 cut(s)	13, 265, 509
NlaIV	GGNNCC	2 cut(s)	152, 247
NmuCI	GTSAC	3 cut(s)	310, 418, 527
NsiI	ATGCAT	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	366
PctI	GAATGC	2 cut(s)	46, 236
PdmI	GAANNNNTTC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	20, 82
PkrI	GCNGC	1 cut(s)	644
PpuMI	RGGWCCY	1 cut(s)	150
PsiI	TTATAA	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	152, 247
PspPI	GGNCC	1 cut(s)	150
PspPPI	RGGWCCY	1 cut(s)	150
RsaI	GTAC	2 cut(s)	98, 113
RsaNI	GTAC	2 cut(s)	97, 112
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	387, 588, 650, 712
SatI	GCNGC	1 cut(s)	643
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	345, 460
SetI	ASST	9 cut(s)	36, 56, 77, 330, 393, 436, 559, 647, 672
SfaNI	GCATC	2 cut(s)	243, 484
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	59, 334
SsiI	CCGC	2 cut(s)	133, 525
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	111, 310
TaqI	TCGA	2 cut(s)	18, 366
TasI	AATT	2 cut(s)	59, 334
TatI	WGTACW	2 cut(s)	96, 111
TfiI	GAWTC	2 cut(s)	20, 82
Tru1I	TTAA	4 cut(s)	387, 588, 650, 712
Tru9I	TTAA	4 cut(s)	387, 588, 650, 712
TseFI	GTSAC	3 cut(s)	310, 418, 527
TseI	GCWGC	1 cut(s)	642
Tsp45I	GTSAC	3 cut(s)	310, 418, 527
TspDTI	ATGAA	3 cut(s)	278, 303, 387
VneI	GTGCAC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	46
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.