Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009156

Physical Location & Seq

Genomic Coordinates Reverse (-)

15973492 .. 15978647

Gene Structure 5156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAGTCCATGGAAATCGATTCCGAGAAGAACCTCCTCCACCGAAAACAAGCGTCCTACATTTCACAGGACGACAAGTTCGTAATGAGAGAGGTGTACCGGGGCCAGCAATACAGCCAAATCTATTTCGCGCGGCTCCATTTGATGAGAACCCTCCTCTACTCCCTCCTCCCCAATTGGAAGCCCCATTTACCAGTTTGCACAATTTTGGGATTGGAGGAAGGCAAGGAATGCACCATTGTTGGCACATTGTACAAGCACATGAAGCTCAAACCTTCGATTCTCGATGAGTACTCTAAGACGAGATCTGTGGTGCCGCTTGTCAAGCCTCATAATTTCGTGCACGCCGATGATTATTTGGTTTTGGAAGATGAGAGTGGAAGGATTAAGCTTGGTGGGAGTGTGCTTTCACCGTCTGTGTATGTAACAGGGAATATTGTTGCTTTGCACGGAAAAGAGACAAGTGAAGGTGAATTCGTAGTACTAGATGTTCTTGAACCTGGCTTACCACCCCAGATCGAGTTGCCACTTAAATCAAGAGAAGATAAGTATGTTGTTTTTGTATCTGGGCTTCGTGTTGGAAGCGACTCTTCAAATCCTCTCTTGTTTCAGCTTCTTGTTGATCATATAACAGGACATTTAGGAGATGAAAAGGAACAAAACCTTGCATCGCAAATAGTCCATGTTGTAATCGCTGGAAACTCTGTTGAACTTCCTCGTGGGCTTCTTAATGGACAGAACTTGGCACCAAAGGATCAAGCTACGCTGTCTTCACCAATTAAGGAGCTGGATATTATGTTGACTCAGATAGCTGCAGGTGTGCCTTTAGATATCATGCCAGGTGTAGATGACCCTGCAAATGCTTCATTGCCTCAACAGCCTTTGAACAGGTGCCTTTTCCCTGGGTCATCAGTTTATAACACGTTTAGATCATGTACTAATCCCCACTCTTTTGATCTTGATGAAATGAGATTTGTGGGAACATCAGGGCAAAATGTAGATGATCTTGATAGGTATTCAGAAGCAAAGGATAAACTTGAATATCTTGAAAGAACATTAAGGTGGAGGCATCTGGCACCAACAGCACCAAATACTCTTGAGTGTTATCCTTTCACGGATACAGATCCCTTCCTGATGGAGAGCTGTCCGTATGTGTACTTCGTTGGTAATCAGGATAAATATGATAGTCGCTTGGTAAAGGGATCTGAAGGGCAGATGGTGAGACTCATTTGCATTCCTAAATTCTGTGAGACAGGAGTTGCTGCTGTGCTAAACATGAGAACCCTTGAATGCCATACACTCAATTTCGGGACTCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022616 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0034645 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_E_B

Protein Analysis

441

Amino Acids

49.39

Weight (kDa)

5.43

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_D_N	PF18018	37 - 164	2.2e-38	DNA polymerase delta subunit OB-fold domain
DNA_pol_E_B	PF04042	185 - 394	2.8e-52	DNA polymerase alpha/epsilon subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42120 AT2G42120
fragaria_vesca	FvH4_6g22330 FvH4_6g22330
malus_domestica	MD12G1057200.v1.1 MD14G1057800.v1.1
prunus_persica	Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1
pyrus_communis	pycom14g04690
rosa_chinensis	RchiOBHm_Chr3g0479691
rosa_multiflora	Rmu_sc0003755.1_g000006 Rmu_sc0031395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402060
rosa_rugosa	Rorug03G0177400 Rorug03G0177500 Rorug03G0177600
rosa_samantha	Rh3AG228200 Rh3BG261400 Rh3CG258500 Rh3DG254700
rosa_wichuraiana	Rw3G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
AarI	CACCTGC	1 cut(s)	806
Acc36I	ACCTGC	1 cut(s)	806
AccB1I	GGYRCC	4 cut(s)	313, 745, 891, 1075
AccII	CGCG	2 cut(s)	131, 133
AciI	CCGC	2 cut(s)	133, 317
AclWI	GGATC	3 cut(s)	762, 1118, 1210
AcsI	RAATTY	2 cut(s)	473, 1241
AcuI	CTGAAG	1 cut(s)	1227
AfaI	GTAC	6 cut(s)	98, 254, 293, 483, 937, 1157
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	7 cut(s)	497, 594, 710, 886, 1040, 1049, 1289
AjnI	CCWGG	3 cut(s)	499, 838, 901
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	7 cut(s)	268, 391, 613, 761, 787, 812, 1143
AluI	AGCT	7 cut(s)	268, 391, 613, 761, 787, 812, 1143
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	3 cut(s)	452, 1216, 1244
Alw44I	GTGCAC	1 cut(s)	341
AlwI	GGATC	3 cut(s)	762, 1118, 1210
AoxI	GGCC	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	812, 1262
ApoI	RAATTY	2 cut(s)	473, 1241
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	4 cut(s)	402, 482, 765, 1231
BaeGI	GKGCMC	1 cut(s)	345
BanI	GGYRCC	4 cut(s)	313, 745, 891, 1075
BarI	GAAGNNNNNNTAC	4 cut(s)	555, 587, 1142, 1174
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	799, 1249
BccI	CCATC	2 cut(s)	1129, 1210
BciT130I	CCWGG	3 cut(s)	501, 840, 903
BciVI	GTATCC	1 cut(s)	1111
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	3 cut(s)	452, 1216, 1244
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	813
BfuAI	ACCTGC	1 cut(s)	806
BfuI	GTATCC	1 cut(s)	1111
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	4 cut(s)	134, 317, 813, 1263
BlsI	GCNGC	4 cut(s)	135, 318, 814, 1264
BmcAI	AGTACT	2 cut(s)	293, 483
Bme1390I	CCNGG	4 cut(s)	101, 501, 840, 903
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	6 cut(s)	104, 137, 315, 747, 893, 1077
BmrFI	CCNGG	4 cut(s)	101, 501, 840, 903
BmsI	GCATC	2 cut(s)	677, 1078
BpiI	GAAGAC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	1118
BpuMI	CCSGG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaJI	CCNNGG	4 cut(s)	9, 100, 901, 902
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	866
Bse8I	GATNNNNATC	1 cut(s)	1122
BseBI	CCWGG	3 cut(s)	501, 840, 903
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	4 cut(s)	9, 100, 901, 902
BseJI	GATNNNNATC	1 cut(s)	1122
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	3 cut(s)	26, 146, 158
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	799, 1249
Bsh1236I	CGCG	2 cut(s)	131, 133
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	4 cut(s)	313, 745, 891, 1075
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	452, 1216, 1244
BsmI	GAATGC	3 cut(s)	236, 1233, 1295
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	133, 317
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	817
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	2 cut(s)	131, 133
BspLI	GGNNCC	6 cut(s)	104, 137, 315, 747, 893, 1077
BspMAI	CTGCAG	1 cut(s)	817
BspMI	ACCTGC	1 cut(s)	806
BspPI	GGATC	3 cut(s)	762, 1118, 1210
BspT107I	GGYRCC	4 cut(s)	313, 745, 891, 1075
BsrDI	GCAATG	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	4 cut(s)	9, 100, 901, 902
BssMI	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	3 cut(s)	501, 840, 903
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	107, 345
BstDEI	CTNAG	2 cut(s)	297, 804
BstDSI	CCRYGG	1 cut(s)	9
BstFNI	CGCG	2 cut(s)	131, 133
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	9 cut(s)	308, 519, 625, 757, 932, 958, 1006, 1126, 1205
BstMAI	GTCTC	3 cut(s)	452, 1216, 1244
BstMBI	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
BstMWI	GCNNNNNNNGC	5 cut(s)	231, 265, 325, 877, 1082
BstNI	CCWGG	3 cut(s)	501, 840, 903
BstSCI	CCNGG	4 cut(s)	99, 499, 838, 901
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	345
BstUI	CGCG	2 cut(s)	131, 133
BstV1I	GCAGC	2 cut(s)	799, 1249
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	3 cut(s)	305, 1123, 1202
BstYI	RGATCY	3 cut(s)	305, 1123, 1202
Bsu15I	ATCGAT	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	1111
BsuRI	GGCC	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	654
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	2 cut(s)	107, 345
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	18
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	6 cut(s)	97, 253, 292, 482, 936, 1156
CviAII	CATG	6 cut(s)	10, 262, 683, 835, 933, 1276
CviQI	GTAC	6 cut(s)	97, 253, 292, 482, 936, 1156
DdeI	CTNAG	2 cut(s)	297, 804
DpnI	GATC	9 cut(s)	307, 518, 624, 756, 931, 957, 1005, 1125, 1204
DpnII	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	832
Eco57I	CTGAAG	1 cut(s)	1227
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	3 cut(s)	499, 838, 901
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	6 cut(s)	13, 265, 686, 838, 936, 1279
FalI	AAGNNNNNCTT	2 cut(s)	574, 606
FatI	CATG	6 cut(s)	9, 261, 682, 834, 932, 1275
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	4 cut(s)	134, 317, 813, 1263
Fsp4HI	GCNGC	4 cut(s)	134, 317, 813, 1263
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	4 cut(s)	134, 317, 813, 1263
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	6 cut(s)	13, 265, 686, 838, 936, 1279
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	7 cut(s)	5, 20, 280, 587, 802, 1224, 1312
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	4 cut(s)	402, 482, 765, 1231
Hpy166II	GTNNAC	4 cut(s)	97, 343, 801, 1156
Hpy188I	TCNGA	4 cut(s)	25, 807, 1021, 1207
Hpy8I	GTNNAC	4 cut(s)	97, 343, 801, 1156
HpyAV	CCTTC	6 cut(s)	215, 285, 375, 461, 1138, 1202
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	1 cut(s)	923
HpyCH4V	TGCA	8 cut(s)	201, 234, 343, 448, 668, 815, 857, 1233
HpyF10VI	GCNNNNNNNGC	5 cut(s)	231, 265, 325, 877, 1082
HpyF3I	CTNAG	2 cut(s)	297, 804
HpySE526I	ACGT	1 cut(s)	923
Hsp92II	CATG	6 cut(s)	13, 265, 686, 838, 936, 1279
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
LmnI	GCTCC	2 cut(s)	141, 784
Lsp1109I	GCAGC	2 cut(s)	799, 1249
LweI	GCATC	2 cut(s)	677, 1078
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	923
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	9 cut(s)	307, 518, 624, 756, 931, 957, 1005, 1125, 1204
MboI	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
MboII	GAAGA	5 cut(s)	40, 380, 554, 582, 762
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	3 cut(s)	305, 1123, 1202
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	8 cut(s)	175, 204, 334, 473, 777, 1241, 1303, 1316
MlyI	GAGTC	5 cut(s)	14, 581, 796, 1218, 1306
MmeI	TCCRAC	1 cut(s)	559
MseI	TTAA	5 cut(s)	387, 531, 729, 780, 1058
MslI	CAYNNNNRTG	2 cut(s)	348, 1060
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	4 cut(s)	101, 501, 840, 903
MunI	CAATTG	1 cut(s)	175
Mva1269I	GAATGC	3 cut(s)	236, 1233, 1295
MvaI	CCWGG	3 cut(s)	501, 840, 903
MvnI	CGCG	2 cut(s)	131, 133
MwoI	GCNNNNNNNGC	5 cut(s)	231, 265, 325, 877, 1082
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
NlaIII	CATG	6 cut(s)	13, 265, 686, 838, 936, 1279
NlaIV	GGNNCC	6 cut(s)	104, 137, 315, 747, 893, 1077
PaqCI	CACCTGC	1 cut(s)	806
PasI	CCCWGGG	1 cut(s)	902
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 345
PctI	GAATGC	3 cut(s)	236, 1233, 1295
PfeI	GAWTC	2 cut(s)	20, 280
PkrI	GCNGC	4 cut(s)	135, 318, 814, 1264
PleI	GAGTC	5 cut(s)	13, 581, 796, 1218, 1306
PpsI	GAGTC	5 cut(s)	13, 581, 796, 1218, 1306
PsiI	TTATAA	1 cut(s)	918
Psp6I	CCWGG	3 cut(s)	499, 838, 901
PspGI	CCWGG	3 cut(s)	499, 838, 901
PspN4I	GGNNCC	6 cut(s)	104, 137, 315, 747, 893, 1077
PspPI	GGNCC	1 cut(s)	103
PsrI	GAACNNNNNNTAC	4 cut(s)	474, 489, 506, 521
PstI	CTGCAG	1 cut(s)	817
PsuI	RGATCY	3 cut(s)	305, 1123, 1202
RsaI	GTAC	6 cut(s)	98, 254, 293, 483, 937, 1157
RsaNI	GTAC	6 cut(s)	97, 253, 292, 482, 936, 1156
RseI	CAYNNNNRTG	2 cut(s)	348, 1060
SaqAI	TTAA	5 cut(s)	387, 531, 729, 780, 1058
SatI	GCNGC	4 cut(s)	134, 317, 813, 1263
Sau3AI	GATC	9 cut(s)	305, 516, 622, 754, 929, 955, 1003, 1123, 1202
Sau96I	GGNCC	1 cut(s)	103
ScaI	AGTACT	2 cut(s)	293, 483
SchI	GAGTC	5 cut(s)	14, 581, 796, 1218, 1306
ScrFI	CCNGG	4 cut(s)	101, 501, 840, 903
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	677, 1078
SfcI	CTRYAG	1 cut(s)	813
SmiMI	CAYNNNNRTG	2 cut(s)	348, 1060
SmlI	CTYRAG	1 cut(s)	1097
SmoI	CTYRAG	1 cut(s)	1097
Sse9I	AATT	8 cut(s)	175, 204, 334, 473, 777, 1241, 1303, 1316
SsiI	CCGC	2 cut(s)	133, 317
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	99, 499, 838, 901
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	1 cut(s)	926
TaqI	TCGA	4 cut(s)	18, 278, 285, 519
TasI	AATT	8 cut(s)	175, 204, 334, 473, 777, 1241, 1303, 1316
TatI	WGTACW	5 cut(s)	252, 291, 481, 935, 1155
TauI	GCSGC	2 cut(s)	136, 319
TfiI	GAWTC	2 cut(s)	20, 280
Tru1I	TTAA	5 cut(s)	387, 531, 729, 780, 1058
Tru9I	TTAA	5 cut(s)	387, 531, 729, 780, 1058
TseI	GCWGC	2 cut(s)	812, 1262
TspDTI	ATGAA	4 cut(s)	278, 663, 855, 978
TspGWI	ACGGA	3 cut(s)	465, 1130, 1137
VneI	GTGCAC	1 cut(s)	341
XapI	RAATTY	2 cut(s)	473, 1241
XspI	CTAG	1 cut(s)	485
ZrmI	AGTACT	2 cut(s)	293, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.