Prupe.7G076900_v2.0.a1

DNA polymerase alpha/epsilon subunit B

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
11355826 .. 11361247
5422 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G076900.3

Sequence Viewer

Length: 1326 bp
ATGGAAGCCATGGAAATCGATTCGGAGAAGAACCTCCAGAGAAAGCATTCCACCTATAACTTGCTGGACGAGAGGTTTGAGATTCAGAAAGAGATGTACAGGGGTCAGCAGTACAGCCAAATATACTTTGCACGTCTCCATATGATGAGGACCCTCCTCTATTCCCTTGTCCCTAATTGGAAACCCCATTTACCAGTTTGCACAGTTTTGGGATTGGAAAAGGACAAGGAATGCATTGTTGTTGGAACCCTGTACAAGCACATGAAACTCAAACCTTGTATTCTTGATGAGTACTCTAAGACGAGATCTACAACACCACTTGTCAAGCCTCATAATTTTGTGCACCCGGATGACCATCTGGTTTTGGAAGATGAAAGTGGAAGAGTAAAGCTTGCTGGGATGCTTTCACCCTCTGTATATGTAACAGGGAGTATTGTTGGTTTGCATGGAAAGGAGACTGATGCTGGTGACTTCTTAGTCCTGGATGTTCTTGAAGCTGGCTTGCCACCCCAGATAGAGCTGCCACTTAAATCAAGAGAAGACAAGTATGTTGTCTTTGTGTCTGGACTTCGTGTTGGAAGCAGCTCTTCAAACCCTCTTCAGTTTCAGCTTCTTGTTGATCATATTACAGGACATTTAGGAGATGAGAAGGAGCAAGGTATTGCAGCACAAATAGTTCATGTTGTTATTGCTGGAAATTCTATTGAAGTTCCTCGTGGACTTCTTAATGGACAGAATTTAGCGTCAAAGGATCAATCAAGGCTGTCTGAGCCAATTAAGGAGCTGGATATTTTGTTGACTCAGATTGCTGCAGGTTTGCCTTTGGATATCATGCCAGGTCTCGATGACCCTGCTAATTTTGCCTTGCCGCAGCAGCCTTTGAACCGATGCCTTTTCCCTGGGTCATCAGCTTATAACACGTTTAGATCATGTACTAATCCCCATTGCTTTGATCTTGATGATATCAGATTTCTCGGAACATCAGGTCAAAATATTGATGATCTTGAAAAGTATTCAGAAGCAAAGGATAAACTTGAATTTGTTGAAAGGACATTGAGGTGGAGGCATCTGGCACCAACAGCACCTAATACTCTTGGGTGTTATCCTTTCACAGACAGGGATCCTTTCCTGATTGAGAGTTGCCCTCATGTTTACTTTATTGGTAATCAGGATAAATATGATAGCCGCTTAGTAAAGGGATCTGAAGGGCAGATGGTGAGACTCATTTGCATTCCTAAATTCTGTGAGACAGGAGTTGCTGTTGTGCTAAACTTGGGAACTCTTGAATGCCATACGCTCAGTTTTGGGACTCACTTCAGCTCATAA

Protein Analysis

442

Amino Acids

49.45

Weight (kDa)

5.74

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AasI GACNNNNNNGTC 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 1072
AciI CCGC 2 cut(s) 869, 1186
AclWI GGATC 4 cut(s) 759, 1115, 1128, 1207
AcsI RAATTY 4 cut(s) 697, 736, 1037, 1238
AcuI CTGAAG 3 cut(s) 584, 1224, 1300
AfaI GTAC 5 cut(s) 98, 113, 254, 293, 934
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 8 cut(s) 494, 591, 707, 883, 1007, 1037, 1046, 1286
AjiI CACGTC 1 cut(s) 134
AjnI CCWGG 3 cut(s) 480, 835, 898
AluBI AGCT 8 cut(s) 391, 497, 520, 585, 610, 784, 911, 1320
AluI AGCT 8 cut(s) 391, 497, 520, 585, 610, 784, 911, 1320
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 5 cut(s) 140, 449, 845, 1213, 1241
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 4 cut(s) 759, 1115, 1128, 1207
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 6 cut(s) 520, 582, 665, 809, 871, 874
ApoI RAATTY 4 cut(s) 697, 736, 1037, 1238
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
Asp700I GAANNNNTTC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 399, 479, 1228
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 345
BamHI GGATCC 1 cut(s) 1120
BanI GGYRCC 1 cut(s) 1072
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 6 cut(s) 507, 594, 677, 796, 883, 886
BccI CCATC 2 cut(s) 363, 1207
BcgI CGANNNNNNTGC 2 cut(s) 833, 867
BciT130I CCWGG 3 cut(s) 482, 837, 900
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 5 cut(s) 140, 449, 845, 1213, 1241
BfmI CTRYAG 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 803
BglII AGATCT 1 cut(s) 305
BisI GCNGC 8 cut(s) 521, 583, 666, 810, 869, 872, 875, 1186
BlsI GCNGC 8 cut(s) 522, 584, 667, 811, 870, 873, 876, 1187
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 4 cut(s) 347, 482, 837, 900
Bme18I GGWCC 1 cut(s) 150
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 4 cut(s) 152, 247, 1074, 1122
BmrFI CCNGG 4 cut(s) 347, 482, 837, 900
BmsI GCATC 4 cut(s) 390, 451, 878, 1075
BpiI GAAGAC 1 cut(s) 546
BplI GAGNNNNNCTC 2 cut(s) 1129, 1161
BpmI CTGGAG 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 845
BsaJI CCNNGG 3 cut(s) 9, 898, 899
BsaXI ACNNNNNCTCC 2 cut(s) 1245, 1275
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 943
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 3 cut(s) 482, 837, 900
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 3 cut(s) 9, 898, 899
BseGI GGATG 3 cut(s) 355, 405, 490
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 3 cut(s) 759, 815, 1312
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 6 cut(s) 507, 594, 677, 796, 883, 886
BseYI CCCAGC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 1072
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 2 cut(s) 155, 1321
BsmAI GTCTC 5 cut(s) 140, 449, 845, 1213, 1241
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 155, 1321
BsmI GAATGC 4 cut(s) 46, 236, 1230, 1292
Bso31I GGTCTC 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 345
Bsp1407I TGTACA 2 cut(s) 96, 252
Bsp143I GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 2 cut(s) 869, 1186
BspCNI CTCAG 3 cut(s) 760, 814, 1311
BspDI ATCGAT 1 cut(s) 18
BspLI GGNNCC 4 cut(s) 152, 247, 1074, 1122
BspMAI CTGCAG 1 cut(s) 814
BspMI ACCTGC 1 cut(s) 803
BspPI GGATC 4 cut(s) 759, 1115, 1128, 1207
BspQI GCTCTTC 1 cut(s) 592
BspT107I GGYRCC 1 cut(s) 1072
BspTNI GGTCTC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 943
BsrGI TGTACA 2 cut(s) 96, 252
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 9, 898, 899
BssMI GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 3 cut(s) 482, 837, 900
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 3 cut(s) 376, 592, 603
BstAUI TGTACA 2 cut(s) 96, 252
BstC8I GCNNGC 3 cut(s) 393, 499, 503
BstDEI CTNAG 6 cut(s) 297, 475, 768, 801, 1189, 1298
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 3 cut(s) 355, 405, 490
BstKTI GATC 8 cut(s) 308, 622, 754, 929, 955, 1003, 1123, 1202
BstMAI GTCTC 5 cut(s) 140, 449, 845, 1213, 1241
BstMBI GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
BstMWI GCNNNNNNNGC 4 cut(s) 769, 860, 874, 1079
BstNI CCWGG 3 cut(s) 482, 837, 900
BstSCI CCNGG 4 cut(s) 345, 480, 835, 898
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 6 cut(s) 507, 594, 677, 796, 883, 886
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 3 cut(s) 305, 1120, 1199
BstYI RGATCY 3 cut(s) 305, 1120, 1199
Bsu15I ATCGAT 1 cut(s) 18
BsuTUI ATCGAT 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 3 cut(s) 355, 405, 490
BveI ACCTGC 1 cut(s) 803
Cac8I GCNNGC 3 cut(s) 393, 499, 503
Cfr13I GGNCC 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 18
CseI GACGC 1 cut(s) 732
Csp6I GTAC 5 cut(s) 97, 112, 253, 292, 933
CviAII CATG 7 cut(s) 10, 262, 446, 680, 832, 930, 1148
CviQI GTAC 5 cut(s) 97, 112, 253, 292, 933
DdeI CTNAG 6 cut(s) 297, 475, 768, 801, 1189, 1298
DpnI GATC 8 cut(s) 307, 621, 753, 928, 954, 1002, 1122, 1201
DpnII GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 3 cut(s) 376, 592, 603
EarI CTCTTC 3 cut(s) 376, 592, 603
Eco130I CCWWGG 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 845
Eco32I GATATC 2 cut(s) 829, 964
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 3 cut(s) 584, 1224, 1300
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 3 cut(s) 480, 835, 898
EcoRV GATATC 2 cut(s) 829, 964
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 7 cut(s) 13, 265, 449, 683, 835, 933, 1151
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FaqI GGGAC 2 cut(s) 155, 1321
FatI CATG 7 cut(s) 9, 261, 445, 679, 831, 929, 1147
FauNDI CATATG 1 cut(s) 141
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 8 cut(s) 521, 583, 666, 810, 869, 872, 875, 1186
FokI GGATG 3 cut(s) 362, 412, 497
Fsp4HI GCNGC 8 cut(s) 521, 583, 666, 810, 869, 872, 875, 1186
GluI GCNGC 8 cut(s) 521, 583, 666, 810, 869, 872, 875, 1186
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 20
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 732
Hin1II CATG 7 cut(s) 13, 265, 449, 683, 835, 933, 1151
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 5 cut(s) 20, 82, 799, 1221, 1309
HpaII CCGG 1 cut(s) 347
HphI GGTGA 3 cut(s) 399, 479, 1228
Hpy166II GTNNAC 4 cut(s) 343, 719, 798, 1153
Hpy188I TCNGA 8 cut(s) 25, 87, 769, 804, 968, 977, 1018, 1204
Hpy8I GTNNAC 4 cut(s) 343, 719, 798, 1153
HpyAV CCTTC 2 cut(s) 643, 1199
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 133, 920
HpyCH4V TGCA 8 cut(s) 131, 201, 234, 343, 445, 665, 812, 1230
HpyF10VI GCNNNNNNNGC 4 cut(s) 769, 860, 874, 1079
HpyF3I CTNAG 6 cut(s) 297, 475, 768, 801, 1189, 1298
HpySE526I ACGT 2 cut(s) 133, 920
Hsp92II CATG 7 cut(s) 13, 265, 449, 683, 835, 933, 1151
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
LguI GCTCTTC 1 cut(s) 592
LmnI GCTCC 2 cut(s) 652, 781
Lsp1109I GCAGC 6 cut(s) 507, 594, 677, 796, 883, 886
LweI GCATC 4 cut(s) 390, 451, 878, 1075
MaeII ACGT 2 cut(s) 133, 920
MaeIII GTNAC 2 cut(s) 421, 467
MalI GATC 8 cut(s) 307, 621, 753, 928, 954, 1002, 1122, 1201
MboI GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
MboII GAAGA 6 cut(s) 40, 380, 393, 551, 579, 590
MflI RGATCY 3 cut(s) 305, 1120, 1199
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 8 cut(s) 175, 334, 697, 736, 774, 856, 1037, 1238
MlyI GAGTC 3 cut(s) 793, 1215, 1303
MmeI TCCRAC 2 cut(s) 223, 556
Mph1103I ATGCAT 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 46
MseI TTAA 3 cut(s) 528, 726, 777
MslI CAYNNNNRTG 2 cut(s) 348, 1057
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 4 cut(s) 347, 482, 837, 900
Mva1269I GAATGC 4 cut(s) 46, 236, 1230, 1292
MvaI CCWGG 3 cut(s) 482, 837, 900
MwoI GCNNNNNNNGC 4 cut(s) 769, 860, 874, 1079
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 9
NdeI CATATG 1 cut(s) 141
NdeII GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
NlaIII CATG 7 cut(s) 13, 265, 449, 683, 835, 933, 1151
NlaIV GGNNCC 4 cut(s) 152, 247, 1074, 1122
NmuCI GTSAC 1 cut(s) 467
NsiI ATGCAT 1 cut(s) 236
PasI CCCWGGG 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 592
PctI GAATGC 4 cut(s) 46, 236, 1230, 1292
PdmI GAANNNNTTC 1 cut(s) 46
PfeI GAWTC 2 cut(s) 20, 82
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 8 cut(s) 522, 584, 667, 811, 870, 873, 876, 1187
PleI GAGTC 3 cut(s) 793, 1215, 1303
PpsI GAGTC 3 cut(s) 793, 1215, 1303
PpuMI RGGWCCY 1 cut(s) 150
PsiI TTATAA 1 cut(s) 915
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 480, 835, 898
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 3 cut(s) 480, 835, 898
PspN4I GGNNCC 4 cut(s) 152, 247, 1074, 1122
PspPI GGNCC 1 cut(s) 150
PspPPI RGGWCCY 1 cut(s) 150
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 3 cut(s) 305, 1120, 1199
RsaI GTAC 5 cut(s) 98, 113, 254, 293, 934
RsaNI GTAC 5 cut(s) 97, 112, 253, 292, 933
RseI CAYNNNNRTG 2 cut(s) 348, 1057
SapI GCTCTTC 1 cut(s) 592
SaqAI TTAA 3 cut(s) 528, 726, 777
SatI GCNGC 8 cut(s) 521, 583, 666, 810, 869, 872, 875, 1186
Sau3AI GATC 8 cut(s) 305, 619, 751, 926, 952, 1000, 1120, 1199
Sau96I GGNCC 1 cut(s) 150
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 3 cut(s) 793, 1215, 1303
ScrFI CCNGG 4 cut(s) 347, 482, 837, 900
SduI GDGCHC 1 cut(s) 345
SfaNI GCATC 4 cut(s) 390, 451, 878, 1075
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 348, 1057
Sse9I AATT 8 cut(s) 175, 334, 697, 736, 774, 856, 1037, 1238
SsiI CCGC 2 cut(s) 869, 1186
SspI AATATT 1 cut(s) 994
StyD4I CCNGG 4 cut(s) 345, 480, 835, 898
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 2 cut(s) 136, 923
TaqI TCGA 2 cut(s) 18, 843
TasI AATT 8 cut(s) 175, 334, 697, 736, 774, 856, 1037, 1238
TatI WGTACW 5 cut(s) 96, 111, 252, 291, 932
TauI GCSGC 2 cut(s) 871, 1188
TfiI GAWTC 2 cut(s) 20, 82
Tru1I TTAA 3 cut(s) 528, 726, 777
Tru9I TTAA 3 cut(s) 528, 726, 777
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 6 cut(s) 520, 582, 665, 809, 871, 874
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 3 cut(s) 278, 387, 668
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 4 cut(s) 697, 736, 1037, 1238
XmnI GAANNNNTTC 1 cut(s) 46
ZrmI AGTACT 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.