DNA polymerase alpha/epsilon subunit B
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42120 AT2G42120 |
| fragaria_vesca | FvH4_6g22330 FvH4_6g22330 |
| malus_domestica | MD12G1057200.v1.1 MD14G1057800.v1.1 |
| prunus_persica | Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1 Prupe.7G076900_v2.0.a1 |
| pyrus_communis | pycom14g04690 |
| rosa_chinensis | RchiOBHm_Chr3g0479691 |
| rosa_multiflora | Rmu_sc0003755.1_g000006 Rmu_sc0031395.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00402060 |
| rosa_rugosa | Rorug03G0177400 Rorug03G0177500 Rorug03G0177600 |
| rosa_samantha | Rh3AG228200 Rh3BG261400 Rh3CG258500 Rh3DG254700 |
| rosa_wichuraiana | Rw3G020420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 915 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 476 |
| Acc36I | ACCTGC | 1 cut(s) | 803 |
| AccB1I | GGYRCC | 1 cut(s) | 1072 |
| AciI | CCGC | 2 cut(s) | 869, 1186 |
| AclWI | GGATC | 4 cut(s) | 759, 1115, 1128, 1207 |
| AcsI | RAATTY | 4 cut(s) | 697, 736, 1037, 1238 |
| AcuI | CTGAAG | 3 cut(s) | 584, 1224, 1300 |
| AfaI | GTAC | 5 cut(s) | 98, 113, 254, 293, 934 |
| AflIII | ACRYGT | 1 cut(s) | 918 |
| AgsI | TTSAA | 8 cut(s) | 494, 591, 707, 883, 1007, 1037, 1046, 1286 |
| AjiI | CACGTC | 1 cut(s) | 134 |
| AjnI | CCWGG | 3 cut(s) | 480, 835, 898 |
| AluBI | AGCT | 8 cut(s) | 391, 497, 520, 585, 610, 784, 911, 1320 |
| AluI | AGCT | 8 cut(s) | 391, 497, 520, 585, 610, 784, 911, 1320 |
| Alw21I | GWGCWC | 1 cut(s) | 345 |
| Alw26I | GTCTC | 5 cut(s) | 140, 449, 845, 1213, 1241 |
| Alw44I | GTGCAC | 1 cut(s) | 341 |
| AlwI | GGATC | 4 cut(s) | 759, 1115, 1128, 1207 |
| ApaLI | GTGCAC | 1 cut(s) | 341 |
| ApeKI | GCWGC | 6 cut(s) | 520, 582, 665, 809, 871, 874 |
| ApoI | RAATTY | 4 cut(s) | 697, 736, 1037, 1238 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 59, 91 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 46 |
| AspS9I | GGNCC | 1 cut(s) | 150 |
| AsuC2I | CCSGG | 1 cut(s) | 347 |
| AsuHPI | GGTGA | 3 cut(s) | 399, 479, 1228 |
| AvaII | GGWCC | 1 cut(s) | 150 |
| BaeGI | GKGCMC | 1 cut(s) | 345 |
| BamHI | GGATCC | 1 cut(s) | 1120 |
| BanI | GGYRCC | 1 cut(s) | 1072 |
| BauI | CACGAG | 1 cut(s) | 714 |
| BbsI | GAAGAC | 1 cut(s) | 546 |
| Bbv12I | GWGCWC | 1 cut(s) | 345 |
| BbvI | GCAGC | 6 cut(s) | 507, 594, 677, 796, 883, 886 |
| BccI | CCATC | 2 cut(s) | 363, 1207 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 833, 867 |
| BciT130I | CCWGG | 3 cut(s) | 482, 837, 900 |
| BclI | TGATCA | 1 cut(s) | 619 |
| BcnI | CCSGG | 1 cut(s) | 347 |
| BcoDI | GTCTC | 5 cut(s) | 140, 449, 845, 1213, 1241 |
| BfmI | CTRYAG | 1 cut(s) | 810 |
| BfuAI | ACCTGC | 1 cut(s) | 803 |
| BglII | AGATCT | 1 cut(s) | 305 |
| BisI | GCNGC | 8 cut(s) | 521, 583, 666, 810, 869, 872, 875, 1186 |
| BlsI | GCNGC | 8 cut(s) | 522, 584, 667, 811, 870, 873, 876, 1187 |
| BmcAI | AGTACT | 1 cut(s) | 293 |
| Bme1390I | CCNGG | 4 cut(s) | 347, 482, 837, 900 |
| Bme18I | GGWCC | 1 cut(s) | 150 |
| BmgBI | CACGTC | 1 cut(s) | 134 |
| BmgT120I | GGNCC | 1 cut(s) | 150 |
| BmiI | GGNNCC | 4 cut(s) | 152, 247, 1074, 1122 |
| BmrFI | CCNGG | 4 cut(s) | 347, 482, 837, 900 |
| BmsI | GCATC | 4 cut(s) | 390, 451, 878, 1075 |
| BpiI | GAAGAC | 1 cut(s) | 546 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1129, 1161 |
| BpmI | CTGGAG | 1 cut(s) | 20 |
| BpuMI | CCSGG | 1 cut(s) | 347 |
| Bsa29I | ATCGAT | 1 cut(s) | 18 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaI | GGTCTC | 1 cut(s) | 845 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 898, 899 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1245, 1275 |
| Bse1I | ACTGG | 1 cut(s) | 194 |
| Bse3DI | GCAATG | 1 cut(s) | 943 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 3 cut(s) | 482, 837, 900 |
| BseCI | ATCGAT | 1 cut(s) | 18 |
| BseDI | CCNNGG | 3 cut(s) | 9, 898, 899 |
| BseGI | GGATG | 3 cut(s) | 355, 405, 490 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseMI | GCAATG | 1 cut(s) | 943 |
| BseMII | CTCAG | 3 cut(s) | 759, 815, 1312 |
| BseNI | ACTGG | 1 cut(s) | 194 |
| BseRI | GAGGAG | 1 cut(s) | 146 |
| BseSI | GKGCMC | 1 cut(s) | 345 |
| BseXI | GCAGC | 6 cut(s) | 507, 594, 677, 796, 883, 886 |
| BseYI | CCCAGC | 1 cut(s) | 395 |
| BshNI | GGYRCC | 1 cut(s) | 1072 |
| BshVI | ATCGAT | 1 cut(s) | 18 |
| BsiHKAI | GWGCWC | 1 cut(s) | 345 |
| BsiSI | CCGG | 1 cut(s) | 347 |
| BslFI | GGGAC | 2 cut(s) | 155, 1321 |
| BsmAI | GTCTC | 5 cut(s) | 140, 449, 845, 1213, 1241 |
| BsmBI | CGTCTC | 1 cut(s) | 140 |
| BsmFI | GGGAC | 2 cut(s) | 155, 1321 |
| BsmI | GAATGC | 4 cut(s) | 46, 236, 1230, 1292 |
| Bso31I | GGTCTC | 1 cut(s) | 845 |
| Bsp1286I | GDGCHC | 1 cut(s) | 345 |
| Bsp1407I | TGTACA | 2 cut(s) | 96, 252 |
| Bsp143I | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| Bsp19I | CCATGG | 1 cut(s) | 9 |
| BspACI | CCGC | 2 cut(s) | 869, 1186 |
| BspCNI | CTCAG | 3 cut(s) | 760, 814, 1311 |
| BspDI | ATCGAT | 1 cut(s) | 18 |
| BspLI | GGNNCC | 4 cut(s) | 152, 247, 1074, 1122 |
| BspMAI | CTGCAG | 1 cut(s) | 814 |
| BspMI | ACCTGC | 1 cut(s) | 803 |
| BspPI | GGATC | 4 cut(s) | 759, 1115, 1128, 1207 |
| BspQI | GCTCTTC | 1 cut(s) | 592 |
| BspT107I | GGYRCC | 1 cut(s) | 1072 |
| BspTNI | GGTCTC | 1 cut(s) | 845 |
| BsrDI | GCAATG | 1 cut(s) | 943 |
| BsrGI | TGTACA | 2 cut(s) | 96, 252 |
| BsrI | ACTGG | 1 cut(s) | 194 |
| BssECI | CCNNGG | 3 cut(s) | 9, 898, 899 |
| BssMI | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| BssSI | CACGAG | 1 cut(s) | 714 |
| BssT1I | CCWWGG | 1 cut(s) | 9 |
| Bst2BI | CACGAG | 1 cut(s) | 714 |
| Bst2UI | CCWGG | 3 cut(s) | 482, 837, 900 |
| Bst4CI | ACNGT | 1 cut(s) | 205 |
| Bst6I | CTCTTC | 3 cut(s) | 376, 592, 603 |
| BstAUI | TGTACA | 2 cut(s) | 96, 252 |
| BstC8I | GCNNGC | 3 cut(s) | 393, 499, 503 |
| BstDEI | CTNAG | 6 cut(s) | 297, 475, 768, 801, 1189, 1298 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstF5I | GGATG | 3 cut(s) | 355, 405, 490 |
| BstKTI | GATC | 8 cut(s) | 308, 622, 754, 929, 955, 1003, 1123, 1202 |
| BstMAI | GTCTC | 5 cut(s) | 140, 449, 845, 1213, 1241 |
| BstMBI | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 769, 860, 874, 1079 |
| BstNI | CCWGG | 3 cut(s) | 482, 837, 900 |
| BstSCI | CCNGG | 4 cut(s) | 345, 480, 835, 898 |
| BstSFI | CTRYAG | 1 cut(s) | 810 |
| BstSLI | GKGCMC | 1 cut(s) | 345 |
| BstV1I | GCAGC | 6 cut(s) | 507, 594, 677, 796, 883, 886 |
| BstV2I | GAAGAC | 1 cut(s) | 546 |
| BstX2I | RGATCY | 3 cut(s) | 305, 1120, 1199 |
| BstYI | RGATCY | 3 cut(s) | 305, 1120, 1199 |
| Bsu15I | ATCGAT | 1 cut(s) | 18 |
| BsuTUI | ATCGAT | 1 cut(s) | 18 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtrI | CACGTC | 1 cut(s) | 134 |
| BtsCI | GGATG | 3 cut(s) | 355, 405, 490 |
| BveI | ACCTGC | 1 cut(s) | 803 |
| Cac8I | GCNNGC | 3 cut(s) | 393, 499, 503 |
| Cfr13I | GGNCC | 1 cut(s) | 150 |
| ClaI | ATCGAT | 1 cut(s) | 18 |
| CseI | GACGC | 1 cut(s) | 732 |
| Csp6I | GTAC | 5 cut(s) | 97, 112, 253, 292, 933 |
| CviAII | CATG | 7 cut(s) | 10, 262, 446, 680, 832, 930, 1148 |
| CviQI | GTAC | 5 cut(s) | 97, 112, 253, 292, 933 |
| DdeI | CTNAG | 6 cut(s) | 297, 475, 768, 801, 1189, 1298 |
| DpnI | GATC | 8 cut(s) | 307, 621, 753, 928, 954, 1002, 1122, 1201 |
| DpnII | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 476 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 476 |
| Eam1104I | CTCTTC | 3 cut(s) | 376, 592, 603 |
| EarI | CTCTTC | 3 cut(s) | 376, 592, 603 |
| Eco130I | CCWWGG | 1 cut(s) | 9 |
| Eco31I | GGTCTC | 1 cut(s) | 845 |
| Eco32I | GATATC | 2 cut(s) | 829, 964 |
| Eco47I | GGWCC | 1 cut(s) | 150 |
| Eco57I | CTGAAG | 3 cut(s) | 584, 1224, 1300 |
| EcoO109I | RGGNCCY | 1 cut(s) | 150 |
| EcoRII | CCWGG | 3 cut(s) | 480, 835, 898 |
| EcoRV | GATATC | 2 cut(s) | 829, 964 |
| EcoT14I | CCWWGG | 1 cut(s) | 9 |
| EcoT22I | ATGCAT | 1 cut(s) | 236 |
| ErhI | CCWWGG | 1 cut(s) | 9 |
| Esp3I | CGTCTC | 1 cut(s) | 140 |
| FaeI | CATG | 7 cut(s) | 13, 265, 449, 683, 835, 933, 1151 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 571, 603 |
| FaqI | GGGAC | 2 cut(s) | 155, 1321 |
| FatI | CATG | 7 cut(s) | 9, 261, 445, 679, 831, 929, 1147 |
| FauNDI | CATATG | 1 cut(s) | 141 |
| FbaI | TGATCA | 1 cut(s) | 619 |
| Fnu4HI | GCNGC | 8 cut(s) | 521, 583, 666, 810, 869, 872, 875, 1186 |
| FokI | GGATG | 3 cut(s) | 362, 412, 497 |
| Fsp4HI | GCNGC | 8 cut(s) | 521, 583, 666, 810, 869, 872, 875, 1186 |
| GluI | GCNGC | 8 cut(s) | 521, 583, 666, 810, 869, 872, 875, 1186 |
| GsaI | CCCAGC | 1 cut(s) | 399 |
| GsuI | CTGGAG | 1 cut(s) | 20 |
| HapII | CCGG | 1 cut(s) | 347 |
| HgaI | GACGC | 1 cut(s) | 732 |
| Hin1II | CATG | 7 cut(s) | 13, 265, 449, 683, 835, 933, 1151 |
| HincII | GTYRAC | 1 cut(s) | 798 |
| HindII | GTYRAC | 1 cut(s) | 798 |
| HindIII | AAGCTT | 1 cut(s) | 389 |
| HinfI | GANTC | 5 cut(s) | 20, 82, 799, 1221, 1309 |
| HpaII | CCGG | 1 cut(s) | 347 |
| HphI | GGTGA | 3 cut(s) | 399, 479, 1228 |
| Hpy166II | GTNNAC | 4 cut(s) | 343, 719, 798, 1153 |
| Hpy188I | TCNGA | 8 cut(s) | 25, 87, 769, 804, 968, 977, 1018, 1204 |
| Hpy8I | GTNNAC | 4 cut(s) | 343, 719, 798, 1153 |
| HpyAV | CCTTC | 2 cut(s) | 643, 1199 |
| HpyCH4III | ACNGT | 1 cut(s) | 205 |
| HpyCH4IV | ACGT | 2 cut(s) | 133, 920 |
| HpyCH4V | TGCA | 8 cut(s) | 131, 201, 234, 343, 445, 665, 812, 1230 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 769, 860, 874, 1079 |
| HpyF3I | CTNAG | 6 cut(s) | 297, 475, 768, 801, 1189, 1298 |
| HpySE526I | ACGT | 2 cut(s) | 133, 920 |
| Hsp92II | CATG | 7 cut(s) | 13, 265, 449, 683, 835, 933, 1151 |
| Ksp22I | TGATCA | 1 cut(s) | 619 |
| Kzo9I | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| LguI | GCTCTTC | 1 cut(s) | 592 |
| LmnI | GCTCC | 2 cut(s) | 652, 781 |
| Lsp1109I | GCAGC | 6 cut(s) | 507, 594, 677, 796, 883, 886 |
| LweI | GCATC | 4 cut(s) | 390, 451, 878, 1075 |
| MaeII | ACGT | 2 cut(s) | 133, 920 |
| MaeIII | GTNAC | 2 cut(s) | 421, 467 |
| MalI | GATC | 8 cut(s) | 307, 621, 753, 928, 954, 1002, 1122, 1201 |
| MboI | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| MboII | GAAGA | 6 cut(s) | 40, 380, 393, 551, 579, 590 |
| MflI | RGATCY | 3 cut(s) | 305, 1120, 1199 |
| MhlI | GDGCHC | 1 cut(s) | 345 |
| MluCI | AATT | 8 cut(s) | 175, 334, 697, 736, 774, 856, 1037, 1238 |
| MlyI | GAGTC | 3 cut(s) | 793, 1215, 1303 |
| MmeI | TCCRAC | 2 cut(s) | 223, 556 |
| Mph1103I | ATGCAT | 1 cut(s) | 236 |
| MroXI | GAANNNNTTC | 1 cut(s) | 46 |
| MseI | TTAA | 3 cut(s) | 528, 726, 777 |
| MslI | CAYNNNNRTG | 2 cut(s) | 348, 1057 |
| MspI | CCGG | 1 cut(s) | 347 |
| MspR9I | CCNGG | 4 cut(s) | 347, 482, 837, 900 |
| Mva1269I | GAATGC | 4 cut(s) | 46, 236, 1230, 1292 |
| MvaI | CCWGG | 3 cut(s) | 482, 837, 900 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 769, 860, 874, 1079 |
| NciI | CCSGG | 1 cut(s) | 347 |
| NcoI | CCATGG | 1 cut(s) | 9 |
| NdeI | CATATG | 1 cut(s) | 141 |
| NdeII | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| NlaIII | CATG | 7 cut(s) | 13, 265, 449, 683, 835, 933, 1151 |
| NlaIV | GGNNCC | 4 cut(s) | 152, 247, 1074, 1122 |
| NmuCI | GTSAC | 1 cut(s) | 467 |
| NsiI | ATGCAT | 1 cut(s) | 236 |
| PasI | CCCWGGG | 1 cut(s) | 899 |
| PciSI | GCTCTTC | 1 cut(s) | 592 |
| PctI | GAATGC | 4 cut(s) | 46, 236, 1230, 1292 |
| PdmI | GAANNNNTTC | 1 cut(s) | 46 |
| PfeI | GAWTC | 2 cut(s) | 20, 82 |
| PfoI | TCCNGGA | 1 cut(s) | 480 |
| PkrI | GCNGC | 8 cut(s) | 522, 584, 667, 811, 870, 873, 876, 1187 |
| PleI | GAGTC | 3 cut(s) | 793, 1215, 1303 |
| PpsI | GAGTC | 3 cut(s) | 793, 1215, 1303 |
| PpuMI | RGGWCCY | 1 cut(s) | 150 |
| PsiI | TTATAA | 1 cut(s) | 915 |
| Psp5II | RGGWCCY | 1 cut(s) | 150 |
| Psp6I | CCWGG | 3 cut(s) | 480, 835, 898 |
| PspFI | CCCAGC | 1 cut(s) | 395 |
| PspGI | CCWGG | 3 cut(s) | 480, 835, 898 |
| PspN4I | GGNNCC | 4 cut(s) | 152, 247, 1074, 1122 |
| PspPI | GGNCC | 1 cut(s) | 150 |
| PspPPI | RGGWCCY | 1 cut(s) | 150 |
| PstI | CTGCAG | 1 cut(s) | 814 |
| PsuI | RGATCY | 3 cut(s) | 305, 1120, 1199 |
| RsaI | GTAC | 5 cut(s) | 98, 113, 254, 293, 934 |
| RsaNI | GTAC | 5 cut(s) | 97, 112, 253, 292, 933 |
| RseI | CAYNNNNRTG | 2 cut(s) | 348, 1057 |
| SapI | GCTCTTC | 1 cut(s) | 592 |
| SaqAI | TTAA | 3 cut(s) | 528, 726, 777 |
| SatI | GCNGC | 8 cut(s) | 521, 583, 666, 810, 869, 872, 875, 1186 |
| Sau3AI | GATC | 8 cut(s) | 305, 619, 751, 926, 952, 1000, 1120, 1199 |
| Sau96I | GGNCC | 1 cut(s) | 150 |
| ScaI | AGTACT | 1 cut(s) | 293 |
| SchI | GAGTC | 3 cut(s) | 793, 1215, 1303 |
| ScrFI | CCNGG | 4 cut(s) | 347, 482, 837, 900 |
| SduI | GDGCHC | 1 cut(s) | 345 |
| SfaNI | GCATC | 4 cut(s) | 390, 451, 878, 1075 |
| SfcI | CTRYAG | 1 cut(s) | 810 |
| SinI | GGWCC | 1 cut(s) | 150 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 348, 1057 |
| Sse9I | AATT | 8 cut(s) | 175, 334, 697, 736, 774, 856, 1037, 1238 |
| SsiI | CCGC | 2 cut(s) | 869, 1186 |
| SspI | AATATT | 1 cut(s) | 994 |
| StyD4I | CCNGG | 4 cut(s) | 345, 480, 835, 898 |
| StyI | CCWWGG | 1 cut(s) | 9 |
| TaaI | ACNGT | 1 cut(s) | 205 |
| TaiI | ACGT | 2 cut(s) | 136, 923 |
| TaqI | TCGA | 2 cut(s) | 18, 843 |
| TasI | AATT | 8 cut(s) | 175, 334, 697, 736, 774, 856, 1037, 1238 |
| TatI | WGTACW | 5 cut(s) | 96, 111, 252, 291, 932 |
| TauI | GCSGC | 2 cut(s) | 871, 1188 |
| TfiI | GAWTC | 2 cut(s) | 20, 82 |
| Tru1I | TTAA | 3 cut(s) | 528, 726, 777 |
| Tru9I | TTAA | 3 cut(s) | 528, 726, 777 |
| TseFI | GTSAC | 1 cut(s) | 467 |
| TseI | GCWGC | 6 cut(s) | 520, 582, 665, 809, 871, 874 |
| Tsp45I | GTSAC | 1 cut(s) | 467 |
| TspDTI | ATGAA | 3 cut(s) | 278, 387, 668 |
| VneI | GTGCAC | 1 cut(s) | 341 |
| VpaK11BI | GGWCC | 1 cut(s) | 150 |
| XapI | RAATTY | 4 cut(s) | 697, 736, 1037, 1238 |
| XmnI | GAANNNNTTC | 1 cut(s) | 46 |
| ZrmI | AGTACT | 1 cut(s) | 293 |
| Zsp2I | ATGCAT | 1 cut(s) | 236 |