Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Forward (+)

17747781 .. 17750524

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCCTCTCCAAGAGAAAGAGGAAAGAGTTTGATGGAATCATCAGGATCAGAGCCACCGGTGACACCAAGCCGTTACGAGTCGCAGAAGAGACGTGACTGGAACACTTTCGGACAGTACTTGAAGAATCAGAGACCGCCTGTGCCGATGTCTCACTGCAGCTGTAACCACGTGCTTGATTTCCTCAGGTACTTAGACCAGTTCGGTAAGACAAAGGTGCACGTGCCTGGCTGTATGTTCTACGGCCAGCCTGAGCCACCAGCTCCTTGCACGTGCCCTCTCAGACAAGCTTGGGGAAGTCTTGACGCTTTGATCGGACGGCTGAGAGCGGCTTACGAGGAGAACGGTGGACCTCCGGAGACTAACCCTTTCGCTAGCGGAGCGATAAGGGTTTATCTGAGGGAGGTTAGGGAGTGTCAGGCTAAGGCTAGAGGGATTCCTTACAAGAAGAAGAAGAAGAAGAAGCCAACGCCGGAGATGGGAGGTGGGAGAGAGGACTCTTCTTCCTCCTCCTCTTCCTTCAGCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

177

Amino Acids

19.79

Weight (kDa)

9.55

Isoelectric Point (pI)

67.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	15 - 138	3e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	3 cut(s)	137, 329, 378
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	505
AcvI	CACGTG	3 cut(s)	172, 223, 273
AfaI	GTAC	2 cut(s)	119, 191
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	162, 263, 290, 525
AluI	AGCT	4 cut(s)	162, 263, 290, 525
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	4 cut(s)	85, 127, 156, 353
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	1 cut(s)	244
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	159
AsiGI	ACCGGT	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	185
BaeGI	GKGCMC	2 cut(s)	222, 278
BbrPI	CACGTG	3 cut(s)	172, 223, 273
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	28, 472
BceAI	ACGGC	3 cut(s)	57, 259, 335
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	4 cut(s)	85, 127, 156, 353
BfaI	CTAG	2 cut(s)	375, 429
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	160, 330
BlsI	GCNGC	2 cut(s)	161, 331
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	378
Bpu10I	CCTNAGC	2 cut(s)	252, 423
BsaAI	YACGTR	3 cut(s)	172, 223, 273
BsaI	GGTCTC	1 cut(s)	127
BsaWI	WCCGGW	2 cut(s)	58, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	104, 199
Bse21I	CCTNAGG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	5 cut(s)	199, 243, 295, 314, 389
BseNI	ACTGG	2 cut(s)	104, 199
BseRI	GAGGAG	3 cut(s)	353, 499, 502
BseSI	GKGCMC	2 cut(s)	222, 278
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	246
BshTI	ACCGGT	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	59, 356, 473
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	4 cut(s)	85, 127, 156, 353
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	222, 278
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	47, 312
BspACI	CCGC	3 cut(s)	137, 329, 378
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	5 cut(s)	198, 244, 294, 315, 390
BspEI	TCCGGA	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	161
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	104, 199
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	2 cut(s)	47, 312
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	117, 347
Bst6I	CTCTTC	3 cut(s)	83, 505, 520
BstBAI	YACGTR	3 cut(s)	172, 223, 273
BstC8I	GCNNGC	2 cut(s)	248, 376
BstDEI	CTNAG	7 cut(s)	185, 193, 252, 281, 323, 398, 423
BstKTI	GATC	2 cut(s)	50, 315
BstMAI	GTCTC	4 cut(s)	85, 127, 156, 353
BstMBI	GATC	2 cut(s)	47, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	2 cut(s)	222, 278
BstV1I	GCAGC	1 cut(s)	171
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	248, 376
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	118, 190
CspAI	ACCGGT	1 cut(s)	58
CviQI	GTAC	2 cut(s)	118, 190
DdeI	CTNAG	7 cut(s)	185, 193, 252, 281, 323, 398, 423
DpnI	GATC	2 cut(s)	49, 314
DpnII	GATC	2 cut(s)	47, 312
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	3 cut(s)	83, 505, 520
EarI	CTCTTC	3 cut(s)	83, 505, 520
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	505
Eco72I	CACGTG	3 cut(s)	172, 223, 273
Eco81I	CCTNAGG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	85
FaiI	YATR	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	160, 330
Fsp4HI	GCNGC	2 cut(s)	160, 330
FspBI	CTAG	2 cut(s)	375, 429
GluI	GCNGC	2 cut(s)	160, 330
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	3 cut(s)	59, 356, 473
HgaI	GACGC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	5 cut(s)	38, 80, 127, 436, 497
HpaII	CCGG	3 cut(s)	59, 356, 473
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	220, 350
Hpy188I	TCNGA	6 cut(s)	52, 113, 132, 284, 317, 399
Hpy188III	TCNNGA	3 cut(s)	45, 302, 356
Hpy8I	GTNNAC	2 cut(s)	220, 350
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	2 cut(s)	117, 347
HpyCH4IV	ACGT	4 cut(s)	94, 171, 222, 272
HpyCH4V	TGCA	3 cut(s)	159, 220, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	7 cut(s)	185, 193, 252, 281, 323, 398, 423
HpySE526I	ACGT	4 cut(s)	94, 171, 222, 272
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	47, 312
LmnI	GCTCC	2 cut(s)	268, 380
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	375, 429
MaeII	ACGT	4 cut(s)	94, 171, 222, 272
MaeIII	GTNAC	4 cut(s)	61, 74, 95, 164
MalI	GATC	2 cut(s)	49, 314
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	2 cut(s)	47, 312
MhlI	GDGCHC	2 cut(s)	222, 278
MlyI	GAGTC	2 cut(s)	89, 491
MroI	TCCGGA	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	532
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	3 cut(s)	59, 356, 473
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	2 cut(s)	47, 312
NheI	GCTAGC	1 cut(s)	374
NmuCI	GTSAC	2 cut(s)	61, 95
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	38, 127, 436
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	161, 331
PleI	GAGTC	2 cut(s)	88, 491
PmaCI	CACGTG	3 cut(s)	172, 223, 273
PmlI	CACGTG	3 cut(s)	172, 223, 273
PpsI	GAGTC	2 cut(s)	88, 491
Ppu21I	YACGTR	3 cut(s)	172, 223, 273
Psp6I	CCWGG	1 cut(s)	226
PspCI	CACGTG	3 cut(s)	172, 223, 273
PspGI	CCWGG	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	119, 191
RsaNI	GTAC	2 cut(s)	118, 190
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	2 cut(s)	160, 330
Sau3AI	GATC	2 cut(s)	47, 312
Sau96I	GGNCC	1 cut(s)	350
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	2 cut(s)	89, 491
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	222, 278
SfcI	CTRYAG	1 cut(s)	157
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	350
SsiI	CCGC	3 cut(s)	137, 329, 378
SspMI	CTAG	2 cut(s)	375, 429
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	117, 347
TaiI	ACGT	4 cut(s)	97, 174, 225, 275
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	38, 127, 436
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	2 cut(s)	61, 95
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	2 cut(s)	61, 95
TspRI	CASTG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	375, 429
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.