Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Forward (+)

21029410 .. 21032824

Gene Structure 3415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCTCACGACAGAGGCAAGGCATTCTCAGGTGGAGATGGATCTTCATCGGGGTACTCGAGTCCGAGTCCCACCGATCATCATGAGCAGCAGCAGCAGCCAGCGACGCCCAGCAGGTACGAGTCACAGAAGAGGAGGGACTGGAACACTTTCGGACAGTACTTGAGGAACCAGAGGCCTCCAGTCCCTCTCTCCCAGTGCAATTACAGCCATGTCCTCGAGTTCCTCAGGTACCTCGATCAGTTCGGGAAGACCAAAGTCCATCTCCAGGGTTGTATGTTTTACGGCCAGCCGGAGCCACCTGCGCCTTGCACGTGTCCTCTCCGGCAGGCCTGGGGAAGCCTGGATGCTCTCATAGGGAGGTTGAGGGCTGCTTATGAGGAGAACGGTGGGGCCCCTGAGAGCAACCCTTTTGCTAGTGGTGCAATCAGGGTTTACTTGAGGGAGGTCAGGGAGTGCCAGGCCAAGGCTAGAGGGATTCCTTACAAGAAGAAGAAGAAGAAGCCGACCGCAACAACTCCGACCAGCAGCAGCAGCAGCAGCAGCGGCAGAGGGGGAGGAGGAGGAGGAGGAGGACCTGGAAATAGTGATCGTGATTCTTCAACAAGTTCTATCATGCACTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

210

Amino Acids

22.7

Weight (kDa)

9.53

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	29 - 152	6.4e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
Acc36I	ACCTGC	2 cut(s)	105, 310
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AciI	CCGC	2 cut(s)	510, 546
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	286
AcvI	CACGTG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	4 cut(s)	56, 119, 161, 233
AfiI	CCNNNNNNNGG	2 cut(s)	268, 466
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	603
AjnI	CCWGG	5 cut(s)	267, 332, 342, 459, 577
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	58, 218
AoxI	GGCC	5 cut(s)	176, 286, 330, 393, 462
ApaI	GGGCCC	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	149
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	393, 394, 575
AvaI	CYCGRG	2 cut(s)	58, 218
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	397
BbrPI	CACGTG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	257
BccI	CCATC	2 cut(s)	32, 270
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	5 cut(s)	269, 334, 344, 461, 579
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	417, 471
BfuAI	ACCTGC	2 cut(s)	105, 310
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	5 cut(s)	269, 334, 344, 461, 579
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	2 cut(s)	58, 218
BmgT120I	GGNCC	3 cut(s)	393, 394, 575
BmiI	GGNNCC	6 cut(s)	170, 233, 297, 394, 395, 396
BmrFI	CCNGG	5 cut(s)	269, 334, 344, 461, 579
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	190
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	2 cut(s)	165, 251
BpuEI	CTTGAG	2 cut(s)	184, 460
BsaAI	YACGTR	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	268, 333, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 466
Bse1I	ACTGG	3 cut(s)	146, 182, 196
Bse21I	CCTNAGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	5 cut(s)	269, 334, 344, 461, 579
BseDI	CCNNGG	3 cut(s)	268, 333, 465
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	268, 466
BseMII	CTCAG	3 cut(s)	42, 241, 390
BseNI	ACTGG	3 cut(s)	146, 182, 196
BseRI	GAGGAG	7 cut(s)	148, 395, 573, 576, 579, 582, 585
BseSI	GKGCMC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BshNI	GGYRCC	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	510
BsiHKCI	CYCGRG	2 cut(s)	58, 218
BsiSI	CCGG	2 cut(s)	293, 325
BslFI	GGGAC	3 cut(s)	54, 152, 170
BslI	CCNNNNNNNGG	2 cut(s)	268, 466
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	54, 152, 170
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BsoBI	CYCGRG	2 cut(s)	58, 218
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	41, 76, 238, 589
BspACI	CCGC	2 cut(s)	510, 546
BspANI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BspCNI	CTCAG	3 cut(s)	41, 240, 391
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	6 cut(s)	170, 233, 297, 394, 395, 396
BspMI	ACCTGC	2 cut(s)	105, 310
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	146, 182, 196
BssECI	CCNNGG	3 cut(s)	268, 333, 465
BssMI	GATC	4 cut(s)	41, 76, 238, 589
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	5 cut(s)	269, 334, 344, 461, 579
Bst4CI	ACNGT	2 cut(s)	159, 389
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	315
BstC8I	GCNNGC	3 cut(s)	102, 290, 330
BstDEI	CTNAG	3 cut(s)	28, 227, 399
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	4 cut(s)	44, 79, 241, 592
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	41, 76, 238, 589
BstMCI	CGRYCG	1 cut(s)	510
BstNI	CCWGG	5 cut(s)	269, 334, 344, 461, 579
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	5 cut(s)	267, 332, 342, 459, 577
BstSLI	GKGCMC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	2 cut(s)	105, 310
Cac8I	GCNNGC	3 cut(s)	102, 290, 330
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	393, 394, 575
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	55, 118, 160, 232
CviAII	CATG	3 cut(s)	83, 212, 616
CviQI	GTAC	4 cut(s)	55, 118, 160, 232
DdeI	CTNAG	3 cut(s)	28, 227, 399
DpnI	GATC	4 cut(s)	43, 78, 240, 591
DpnII	GATC	4 cut(s)	41, 76, 238, 589
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	2 cut(s)	178, 332
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	575
Eco72I	CACGTG	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	58, 218
EcoO109I	RGGNCCY	3 cut(s)	393, 394, 575
EcoRII	CCWGG	5 cut(s)	267, 332, 342, 459, 577
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	86, 215, 619
FaiI	YATR	6 cut(s)	84, 213, 278, 356, 378, 617
FaqI	GGGAC	3 cut(s)	54, 152, 170
FatI	CATG	3 cut(s)	82, 211, 615
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	397
FspBI	CTAG	2 cut(s)	417, 471
GlaI	GCGC	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	2 cut(s)	165, 251
HaeIII	GGCC	5 cut(s)	178, 288, 332, 395, 464
HapII	CCGG	2 cut(s)	293, 325
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	86, 215, 619
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	5 cut(s)	61, 67, 122, 478, 596
HpaII	CCGG	2 cut(s)	293, 325
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	3 cut(s)	66, 155, 522
Hpy188III	TCNNGA	5 cut(s)	8, 83, 247, 593, 627
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	159, 389
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	4 cut(s)	201, 312, 425, 619
HpyF3I	CTNAG	3 cut(s)	28, 227, 399
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	86, 215, 619
HspAI	GCGC	1 cut(s)	305
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	41, 76, 238, 589
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	417, 471
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	4 cut(s)	43, 78, 240, 591
MboI	GATC	4 cut(s)	41, 76, 238, 589
MboII	GAAGA	8 cut(s)	36, 142, 262, 502, 505, 508, 511, 591
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	3 cut(s)	70, 76, 131
MmeI	TCCRAC	1 cut(s)	545
MroXI	GAANNNNTTC	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	546
MspI	CCGG	2 cut(s)	293, 325
MspR9I	CCNGG	5 cut(s)	269, 334, 344, 461, 579
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	5 cut(s)	269, 334, 344, 461, 579
NdeII	GATC	4 cut(s)	41, 76, 238, 589
NlaIII	CATG	3 cut(s)	86, 215, 619
NlaIV	GGNNCC	6 cut(s)	170, 233, 297, 394, 395, 396
NmuCI	GTSAC	1 cut(s)	123
PaeR7I	CTCGAG	2 cut(s)	58, 218
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	310
PceI	AGGCCT	2 cut(s)	178, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	478, 596
PleI	GAGTC	3 cut(s)	69, 75, 130
PmaCI	CACGTG	1 cut(s)	315
PmlI	CACGTG	1 cut(s)	315
PpsI	GAGTC	3 cut(s)	69, 75, 130
Ppu21I	YACGTR	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	575
PshAI	GACNNNNGTC	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	5 cut(s)	267, 332, 342, 459, 577
PspCI	CACGTG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	5 cut(s)	267, 332, 342, 459, 577
PspN4I	GGNNCC	6 cut(s)	170, 233, 297, 394, 395, 396
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	3 cut(s)	393, 394, 575
PspPPI	RGGWCCY	1 cut(s)	575
PspXI	VCTCGAGB	2 cut(s)	58, 218
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	4 cut(s)	56, 119, 161, 233
RsaNI	GTAC	4 cut(s)	55, 118, 160, 232
Sau3AI	GATC	4 cut(s)	41, 76, 238, 589
Sau96I	GGNCC	3 cut(s)	393, 394, 575
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	3 cut(s)	70, 76, 131
ScrFI	CCNGG	5 cut(s)	269, 334, 344, 461, 579
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	9 cut(s)	34, 119, 233, 237, 304, 317, 365, 450, 580
SfaNI	GCATC	1 cut(s)	337
Sfr274I	CTCGAG	2 cut(s)	58, 218
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	2 cut(s)	58, 218
SmlI	CTYRAG	4 cut(s)	58, 163, 218, 439
SmoI	CTYRAG	4 cut(s)	58, 163, 218, 439
Sse9I	AATT	1 cut(s)	202
SseBI	AGGCCT	2 cut(s)	178, 332
SsiI	CCGC	2 cut(s)	510, 546
SspMI	CTAG	2 cut(s)	417, 471
StuI	AGGCCT	2 cut(s)	178, 332
StyD4I	CCNGG	5 cut(s)	267, 332, 342, 459, 577
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	159, 389
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	59, 219, 237
TasI	AATT	1 cut(s)	202
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	478, 596
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	575
XhoI	CTCGAG	2 cut(s)	58, 218
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	417, 471
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.