Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Reverse (-)

30054146 .. 30058067

Gene Structure 3922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1237600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTAGAGAAAGAGGCAAAGATTTCGCCGAAGGATCGTCTGCTGGAGGTTCTCTGAATGATGATCAGCAGCAGCCTGCCACACCAAGCCGCTATGAATCCCAGAAGAGAAGGGACTGGAACACTTTTGGTCAGTACTTGAAGAACCAGAGGCCTCCAGTGGCGCTGTCTCAGAGCAATTACAACCATGTACTGGAGTTTCTTAGGTATCTGGACCAGTTTGGGAAGACCAAAGTTCATCTCCAGGGTTGCATGTTTTATGGGCAGCCTGAGCCTCCTGCTCCTTGCACATGTCCACTTAGGCAAGCCTGGGGCAGCCTGGATGCTCTCATAGGGAGGCTGAGGGCTGCCTACGAAGAAAATGGAGGATCCCCGGAGAACAACCCTTTCGCTAGCGGTGCAATCAGGGTTTACCTGAGGGAGGTCAGGGAGTGCCAAGCTATGGCAAGAGGGATTCCTTTTAAGAAGAAAAAGAAGAAGCCAAGTCCAAGCAAGGGATCCGGACCAAATGATGATGAATCAAGTTCTACCATGCATTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

9.32

Isoelectric Point (pI)

65.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	22 - 144	2.6e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	193, 442
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	2 cut(s)	91, 396
AclWI	GGATC	5 cut(s)	43, 363, 376, 492, 505
AfaI	GTAC	2 cut(s)	137, 192
AfiI	CCNNNNNNNGG	4 cut(s)	193, 421, 442, 494
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	3 cut(s)	243, 308, 318
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	5 cut(s)	43, 363, 376, 492, 505
Aor13HI	TCCGGA	1 cut(s)	500
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	5 cut(s)	70, 73, 265, 315, 347
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	214, 503
AsuC2I	CCSGG	1 cut(s)	374
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	214, 503
AxyI	CCTNAGG	1 cut(s)	416
BamHI	GGATCC	2 cut(s)	368, 497
BbsI	GAAGAC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	5 cut(s)	82, 85, 277, 327, 334
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	3 cut(s)	245, 310, 320
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	6, 393
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	6 cut(s)	71, 74, 91, 266, 316, 348
BlsI	GCNGC	6 cut(s)	72, 75, 92, 267, 317, 349
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	4 cut(s)	245, 310, 320, 374
Bme18I	GGWCC	2 cut(s)	214, 503
BmgT120I	GGNCC	2 cut(s)	214, 503
BmiI	GGNNCC	2 cut(s)	370, 499
BmrFI	CCNGG	4 cut(s)	245, 310, 320, 374
BmsI	GCATC	1 cut(s)	313
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	4 cut(s)	66, 141, 215, 227
Bpu10I	CCTNAGC	2 cut(s)	270, 341
BpuMI	CCSGG	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	244, 309, 372
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 421, 442, 494
Bse1I	ACTGG	4 cut(s)	122, 158, 198, 217
Bse21I	CCTNAGG	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	500
BseBI	CCWGG	3 cut(s)	245, 310, 320
BseDI	CCNNGG	3 cut(s)	244, 309, 372
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	4 cut(s)	193, 421, 442, 494
BseMII	CTCAG	4 cut(s)	185, 261, 332, 407
BseNI	ACTGG	4 cut(s)	122, 158, 198, 217
BseXI	GCAGC	5 cut(s)	82, 85, 277, 327, 334
BshFI	GGCC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	374, 501
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	4 cut(s)	193, 421, 442, 494
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	35, 64, 368, 497
BspACI	CCGC	2 cut(s)	91, 396
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	4 cut(s)	184, 262, 333, 408
BspEI	TCCGGA	1 cut(s)	500
BspLI	GGNNCC	2 cut(s)	370, 499
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	5 cut(s)	43, 363, 376, 492, 505
BsrI	ACTGG	4 cut(s)	122, 158, 198, 217
BssECI	CCNNGG	3 cut(s)	244, 309, 372
BssMI	GATC	4 cut(s)	35, 64, 368, 497
Bst2UI	CCWGG	3 cut(s)	245, 310, 320
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	78, 306, 394
BstDEI	CTNAG	6 cut(s)	171, 203, 270, 299, 341, 416
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	4 cut(s)	38, 67, 371, 500
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	4 cut(s)	35, 64, 368, 497
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 398
BstNI	CCWGG	3 cut(s)	245, 310, 320
BstNSI	RCATGY	2 cut(s)	256, 294
BstSCI	CCNGG	4 cut(s)	243, 308, 318, 372
BstV1I	GCAGC	5 cut(s)	82, 85, 277, 327, 334
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	368, 497
BstYI	RGATCY	2 cut(s)	368, 497
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	3 cut(s)	78, 306, 394
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	214, 503
Csp6I	GTAC	2 cut(s)	136, 191
CviAII	CATG	4 cut(s)	188, 253, 291, 532
CviQI	GTAC	2 cut(s)	136, 191
DdeI	CTNAG	6 cut(s)	171, 203, 270, 299, 341, 416
DpnI	GATC	4 cut(s)	37, 66, 370, 499
DpnII	GATC	4 cut(s)	35, 64, 368, 497
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco147I	AGGCCT	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	214, 503
Eco81I	CCTNAGG	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	3 cut(s)	243, 308, 318
EcoT22I	ATGCAT	1 cut(s)	537
FaeI	CATG	4 cut(s)	191, 256, 294, 535
FaiI	YATR	8 cut(s)	96, 189, 254, 261, 292, 332, 443, 533
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	4 cut(s)	187, 252, 290, 531
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	6 cut(s)	71, 74, 91, 266, 316, 348
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	6 cut(s)	71, 74, 91, 266, 316, 348
FspBI	CTAG	2 cut(s)	6, 393
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	6 cut(s)	71, 74, 91, 266, 316, 348
GsuI	CTGGAG	4 cut(s)	66, 141, 215, 227
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	374, 501
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	4 cut(s)	191, 256, 294, 535
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	3 cut(s)	98, 454, 518
HpaII	CCGG	2 cut(s)	374, 501
Hpy166II	GTNNAC	2 cut(s)	296, 412
Hpy188I	TCNGA	2 cut(s)	57, 174
Hpy188III	TCNNGA	4 cut(s)	6, 212, 501, 543
Hpy8I	GTNNAC	2 cut(s)	296, 412
HpyAV	CCTTC	2 cut(s)	26, 105
HpyCH4V	TGCA	4 cut(s)	252, 288, 401, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 398
HpyF3I	CTNAG	6 cut(s)	171, 203, 270, 299, 341, 416
Hsp92II	CATG	4 cut(s)	191, 256, 294, 535
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	35, 64, 368, 497
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	5 cut(s)	82, 85, 277, 327, 334
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	6, 393
MalI	GATC	4 cut(s)	37, 66, 370, 499
MboI	GATC	4 cut(s)	35, 64, 368, 497
MboII	GAAGA	6 cut(s)	118, 154, 238, 368, 478, 487
MflI	RGATCY	2 cut(s)	368, 497
MluCI	AATT	1 cut(s)	178
Mph1103I	ATGCAT	1 cut(s)	537
MroI	TCCGGA	1 cut(s)	500
MseI	TTAA	1 cut(s)	462
MspI	CCGG	2 cut(s)	374, 501
MspR9I	CCNGG	4 cut(s)	245, 310, 320, 374
MvaI	CCWGG	3 cut(s)	245, 310, 320
MwoI	GCNNNNNNNGC	2 cut(s)	271, 398
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	4 cut(s)	35, 64, 368, 497
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	4 cut(s)	191, 256, 294, 535
NlaIV	GGNNCC	2 cut(s)	370, 499
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	2 cut(s)	256, 294
PceI	AGGCCT	1 cut(s)	154
PciI	ACATGT	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	98, 454, 518
PflMI	CCANNNNNTGG	2 cut(s)	193, 442
PkrI	GCNGC	6 cut(s)	72, 75, 92, 267, 317, 349
PscI	ACATGT	1 cut(s)	290
Psp6I	CCWGG	3 cut(s)	243, 308, 318
PspGI	CCWGG	3 cut(s)	243, 308, 318
PspN4I	GGNNCC	2 cut(s)	370, 499
PspPI	GGNCC	2 cut(s)	214, 503
PsuI	RGATCY	2 cut(s)	368, 497
RsaI	GTAC	2 cut(s)	137, 192
RsaNI	GTAC	2 cut(s)	136, 191
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	6 cut(s)	71, 74, 91, 266, 316, 348
Sau3AI	GATC	4 cut(s)	35, 64, 368, 497
Sau96I	GGNCC	2 cut(s)	214, 503
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	4 cut(s)	245, 310, 320, 374
SetI	ASST	5 cut(s)	52, 209, 417, 426, 442
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	2 cut(s)	214, 503
Sse9I	AATT	1 cut(s)	178
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	91, 396
SspMI	CTAG	2 cut(s)	6, 393
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	4 cut(s)	243, 308, 318, 372
TasI	AATT	1 cut(s)	178
TatI	WGTACW	2 cut(s)	135, 190
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	98, 454, 518
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	5 cut(s)	70, 73, 265, 315, 347
TspDTI	ATGAA	3 cut(s)	111, 227, 531
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	2 cut(s)	193, 442
VpaK11BI	GGWCC	2 cut(s)	214, 503
XagI	CCTNNNNNAGG	1 cut(s)	419
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	2 cut(s)	256, 294
XspI	CTAG	2 cut(s)	6, 393
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.