Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Reverse (-)

10143270 .. 10147179

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCTGCCGAAAGAGGCAAAGATTTCGCCGATGGATCATCGTCTGCCGGGTCTCCAGGCGATGATCATCAGCAGCCAGCCACTCCGAGCCGGTACGAGTCCCAGAAGAGAAGGGACTGGAATACTTTTGGTCAGTACTTGAAGAACCAAAGGCCTCCAGTCCCACTTTCTCAGTGCAATTACAACCATGTGTTGGAGTTTCTTAGGTATCTGGATCAGTTTGGGAAGACCAAAGTTCATCTCCAGGGCTGCATGTTTTATGGGCAGCCTGAGCCTCCTGCTCCTTGCACATGCCCTCTAAGGCAAGCTTGGGGCAGCCTTGATGCCCTCATAGGGAGGCTGAGGGCTGCCTATGAAGAAAATGGAGGGTCCCCAGAAACCAACCCTTTTGCTAGTGGTGCAATCAGGGTTTATCTGAGGGAGGTGAGGGAGTGTCAAGCTAAGGCAAGAGGGATCCCTTACAAGAAGAAGAAGAAGAAGCCAAGTCCAAGCAAGGGAGGAAATGATGATGAATCTAGCTCTACCATGCACTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

180

Amino Acids

19.97

Weight (kDa)

9.21

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AclWI	GGATC	4 cut(s)	43, 222, 448, 461
AfaI	GTAC	2 cut(s)	95, 137
AfiI	CCNNNNNNNGG	3 cut(s)	193, 333, 494
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	55, 243
AluBI	AGCT	3 cut(s)	308, 440, 519
AluI	AGCT	3 cut(s)	308, 440, 519
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	4 cut(s)	43, 222, 448, 461
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	5 cut(s)	73, 249, 265, 315, 347
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	5 cut(s)	85, 236, 277, 327, 334
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	2 cut(s)	57, 245
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	393, 516
BisI	GCNGC	5 cut(s)	74, 250, 266, 316, 348
BlsI	GCNGC	5 cut(s)	75, 251, 267, 317, 349
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	3 cut(s)	49, 57, 245
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	370, 371, 455
BmrFI	CCNGG	3 cut(s)	49, 57, 245
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	3 cut(s)	39, 141, 227
Bpu10I	CCTNAGC	3 cut(s)	270, 341, 441
BpuMI	CCSGG	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 333, 494
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	122, 158
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	57, 245
BseDI	CCNNGG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	193, 333, 494
BseMII	CTCAG	4 cut(s)	185, 261, 332, 407
BseNI	ACTGG	2 cut(s)	122, 158
BseXI	GCAGC	5 cut(s)	85, 236, 277, 327, 334
BshFI	GGCC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	48, 91
BslFI	GGGAC	4 cut(s)	85, 128, 146, 355
BslI	CCNNNNNNNGG	3 cut(s)	193, 333, 494
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	4 cut(s)	85, 128, 146, 355
BsnI	GGCC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	35, 64, 214, 453
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	4 cut(s)	184, 262, 333, 408
BspLI	GGNNCC	3 cut(s)	370, 371, 455
BspPI	GGATC	4 cut(s)	43, 222, 448, 461
BspTNI	GGTCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	122, 158
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	35, 64, 214, 453
Bst2UI	CCWGG	2 cut(s)	57, 245
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	78, 306
BstDEI	CTNAG	7 cut(s)	171, 203, 270, 299, 341, 416, 441
BstKTI	GATC	4 cut(s)	38, 67, 217, 456
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	35, 64, 214, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 398
BstNI	CCWGG	2 cut(s)	57, 245
BstNSI	RCATGY	2 cut(s)	256, 294
BstSCI	CCNGG	3 cut(s)	47, 55, 243
BstV1I	GCAGC	5 cut(s)	85, 236, 277, 327, 334
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	78, 306
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	94, 136
CviAII	CATG	4 cut(s)	188, 253, 291, 526
CviQI	GTAC	2 cut(s)	94, 136
DdeI	CTNAG	7 cut(s)	171, 203, 270, 299, 341, 416, 441
DpnI	GATC	4 cut(s)	37, 66, 216, 455
DpnII	GATC	4 cut(s)	35, 64, 214, 453
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco147I	AGGCCT	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	55, 243
FaeI	CATG	4 cut(s)	191, 256, 294, 529
FaiI	YATR	7 cut(s)	189, 254, 261, 292, 332, 354, 527
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	4 cut(s)	85, 128, 146, 355
FatI	CATG	4 cut(s)	187, 252, 290, 525
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	74, 250, 266, 316, 348
Fsp4HI	GCNGC	5 cut(s)	74, 250, 266, 316, 348
FspBI	CTAG	2 cut(s)	393, 516
GluI	GCNGC	5 cut(s)	74, 250, 266, 316, 348
GsuI	CTGGAG	3 cut(s)	39, 141, 227
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	48, 91
Hin1II	CATG	4 cut(s)	191, 256, 294, 529
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	2 cut(s)	98, 512
HpaII	CCGG	2 cut(s)	48, 91
HphI	GGTGA	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	87, 417
Hpy188III	TCNNGA	2 cut(s)	212, 537
HpyAV	CCTTC	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	177, 252, 288, 401, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 398
HpyF3I	CTNAG	7 cut(s)	171, 203, 270, 299, 341, 416, 441
Hsp92II	CATG	4 cut(s)	191, 256, 294, 529
KflI	GGGWCCC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	35, 64, 214, 453
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	5 cut(s)	85, 236, 277, 327, 334
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	393, 516
MalI	GATC	4 cut(s)	37, 66, 216, 455
MboI	GATC	4 cut(s)	35, 64, 214, 453
MboII	GAAGA	8 cut(s)	118, 154, 238, 368, 478, 481, 484, 487
MflI	RGATCY	1 cut(s)	453
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	174
MspI	CCGG	2 cut(s)	48, 91
MspR9I	CCNGG	3 cut(s)	49, 57, 245
MvaI	CCWGG	2 cut(s)	57, 245
MwoI	GCNNNNNNNGC	2 cut(s)	271, 398
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	4 cut(s)	35, 64, 214, 453
NlaIII	CATG	4 cut(s)	191, 256, 294, 529
NlaIV	GGNNCC	3 cut(s)	370, 371, 455
NspI	RCATGY	2 cut(s)	256, 294
PceI	AGGCCT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	5 cut(s)	75, 251, 267, 317, 349
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	55, 243
PspGI	CCWGG	2 cut(s)	55, 243
PspN4I	GGNNCC	3 cut(s)	370, 371, 455
PspPI	GGNCC	1 cut(s)	369
PspPPI	RGGWCCY	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	95, 137
RsaNI	GTAC	2 cut(s)	94, 136
SatI	GCNGC	5 cut(s)	74, 250, 266, 316, 348
Sau3AI	GATC	4 cut(s)	35, 64, 214, 453
Sau96I	GGNCC	1 cut(s)	369
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	49, 57, 245
SetI	ASST	5 cut(s)	209, 310, 426, 442, 521
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	1 cut(s)	178
SseBI	AGGCCT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	393, 516
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	3 cut(s)	47, 55, 243
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	512
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	5 cut(s)	73, 249, 265, 315, 347
TspDTI	ATGAA	3 cut(s)	227, 369, 525
TspRI	CASTG	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	369
XceI	RCATGY	2 cut(s)	256, 294
XspI	CTAG	2 cut(s)	393, 516
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.