Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Reverse (-)

31590867 .. 31591628

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0288800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTGGCCAAGCAAGGTTGGAGATTGGTAACCCAACCGGACTCTCTCATTGCACAGGTTTACAAAGCTCGGTATTTCCCCAATGGTACCTTTTGGGAGGCTGAGTTGGGGGACTCTCCTTCGTTCTCTTGGCGTAGTATCCTAAATGGTCGACCAACACTCCAAGCCGGTACTAGATGGAGAGTGGGTGATGGATCCCAAATAAACATTTGGCAACACCAGTGGATACCACACTGCCCTACTTATCTCATTCACCGTCCTAGCAACACTGACCTAGAGCTTGTCTCTAGCCTTATGCAATCTGACCGACGTTCTTGGAATGTTGAAGTAGTGCAATCTCTCTTTCTCCCAGACATCTCTAACAAGATCCTAGCCATCCCTTTGAGCAGACAACATGCTGCTGACAAACTCATTTGGAGTCCGGAACGGAGGGGACGGTTCTCTGTGAAATCAGCTTATTGGATAGCGCGGCAATCTGTTCTGGGGAATACTTTAGCTTCTTCATCGAATGGAAATCCTTTTCAACCATTATGGAAGCAGATTTGGAATGCAAGGGTCCCGGGAAAGGTTCAAATTTGTGTTTGGAGAGCTGCAAATGACCTCCTACCTACTAGGGATCGGTTATGCACTAAAGGCTATATGGGAGACACCAACTGTCTTCTCTGCAGGCACAGGAGGGAAGATACCTTGCATCTTTTCTTTTCAAAGAATGGCTTCTTGAGTGTGCTTTACGACTTGGAAGAGAGACTTTTGACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

253

Amino Acids

29.25

Weight (kDa)

9.87

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	147 - 235	9.5e-15	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	1 cut(s)	469
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	1 cut(s)	469
AclWI	GGATC	4 cut(s)	189, 202, 361, 624
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	573
AfaI	GTAC	2 cut(s)	88, 172
AfiI	CCNNNNNNNGG	1 cut(s)	565
AgsI	TTSAA	4 cut(s)	326, 524, 572, 705
AluBI	AGCT	5 cut(s)	68, 280, 455, 497, 590
AluI	AGCT	5 cut(s)	68, 280, 455, 497, 590
Alw26I	GTCTC	3 cut(s)	289, 639, 739
AlwI	GGATC	4 cut(s)	189, 202, 361, 624
Ama87I	CYCGRG	1 cut(s)	559
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	398, 590
ApoI	RAATTY	1 cut(s)	573
Asp700I	GAANNNNTTC	1 cut(s)	713
Asp718I	GGTACC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	2 cut(s)	560, 561
AsuHPI	GGTGA	2 cut(s)	200, 245
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	650
BbvI	GCAGC	2 cut(s)	385, 577
BccI	CCATC	3 cut(s)	171, 185, 383
BciVI	GTATCC	2 cut(s)	149, 219
BcnI	CCSGG	2 cut(s)	560, 561
BcoDI	GTCTC	3 cut(s)	289, 639, 739
BfaI	CTAG	6 cut(s)	174, 261, 275, 288, 371, 612
BfmI	CTRYAG	1 cut(s)	664
BfuI	GTATCC	2 cut(s)	149, 219
BisI	GCNGC	3 cut(s)	399, 470, 591
BlsI	GCNGC	3 cut(s)	400, 471, 592
Bme1390I	CCNGG	2 cut(s)	560, 561
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	4 cut(s)	88, 196, 557, 558
BmrFI	CCNGG	2 cut(s)	560, 561
BmsI	GCATC	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuEI	CTTGAG	1 cut(s)	739
BpuMI	CCSGG	2 cut(s)	560, 561
BsaJI	CCNNGG	1 cut(s)	559
BsaWI	WCCGGW	2 cut(s)	37, 421
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 144, 172, 174, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	385, 577
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	4 cut(s)	38, 168, 422, 560
BslFI	GGGAC	3 cut(s)	125, 447, 542
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmAI	GTCTC	3 cut(s)	289, 639, 739
BsmFI	GGGAC	3 cut(s)	125, 447, 542
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	194, 366, 616
BspACI	CCGC	1 cut(s)	469
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	4 cut(s)	88, 196, 557, 558
BspMAI	CTGCAG	1 cut(s)	668
BspPI	GGATC	4 cut(s)	189, 202, 361, 624
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	3 cut(s)	194, 366, 616
Bst4CI	ACNGT	3 cut(s)	257, 438, 656
Bst6I	CTCTTC	1 cut(s)	735
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	3 cut(s)	197, 369, 619
BstMAI	GTCTC	3 cut(s)	289, 639, 739
BstMBI	GATC	3 cut(s)	194, 366, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	633
BstNSI	RCATGY	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	558, 559
BstSFI	CTRYAG	1 cut(s)	664
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	385, 577
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	2 cut(s)	194, 366
BstYI	RGATCY	2 cut(s)	194, 366
BsuI	GTATCC	2 cut(s)	149, 219
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	227, 232, 267
Cac8I	GCNNGC	1 cut(s)	668
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	556
Cfr9I	CCCGGG	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	87, 171
CspCI	CAANNNNNGTGG	2 cut(s)	203, 238
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	2 cut(s)	87, 171
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	196, 368, 618
DpnII	GATC	3 cut(s)	194, 366, 616
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	559
Eco91I	GGTNACC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	28
FaeI	CATG	1 cut(s)	398
FaiI	YATR	6 cut(s)	296, 396, 532, 625, 639, 641
FalI	AAGNNNNNCTT	3 cut(s)	698, 730, 732
FaqI	GGGAC	3 cut(s)	125, 447, 542
FatI	CATG	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	399, 470, 591
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	399, 470, 591
FspBI	CTAG	6 cut(s)	174, 261, 275, 288, 371, 612
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	3 cut(s)	399, 470, 591
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	4 cut(s)	38, 168, 422, 560
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	41, 113, 418
HpaII	CCGG	4 cut(s)	38, 168, 422, 560
HphI	GGTGA	2 cut(s)	200, 245
Hpy166II	GTNNAC	2 cut(s)	61, 152
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	2 cut(s)	422, 718
Hpy8I	GTNNAC	2 cut(s)	61, 152
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	3 cut(s)	257, 438, 656
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	8 cut(s)	53, 298, 334, 551, 593, 627, 666, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	633
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	1 cut(s)	467
KflI	GGGWCCC	1 cut(s)	556
Kpn2I	TCCGGA	1 cut(s)	421
KpnI	GGTACC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	194, 366, 616
Lsp1109I	GCAGC	2 cut(s)	385, 577
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	6 cut(s)	174, 261, 275, 288, 371, 612
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	196, 368, 618
MboI	GATC	3 cut(s)	194, 366, 616
MboII	GAAGA	4 cut(s)	492, 650, 692, 752
MflI	RGATCY	2 cut(s)	194, 366
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	573
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	35, 107, 427
MnlI	CCTC	4 cut(s)	91, 423, 611, 669
Mox20I	TGGCCA	1 cut(s)	8
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	4 cut(s)	38, 168, 422, 560
MspR9I	CCNGG	2 cut(s)	560, 561
Mva1269I	GAATGC	1 cut(s)	553
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	1 cut(s)	633
NciI	CCSGG	2 cut(s)	560, 561
NdeII	GATC	3 cut(s)	194, 366, 616
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	4 cut(s)	88, 196, 557, 558
NspI	RCATGY	1 cut(s)	398
PctI	GAATGC	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	713
PkrI	GCNGC	3 cut(s)	400, 471, 592
PleI	GAGTC	3 cut(s)	35, 107, 426
PpsI	GAGTC	3 cut(s)	35, 107, 426
PpuMI	RGGWCCY	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	88, 196, 557, 558
PspPI	GGNCC	1 cut(s)	556
PspPPI	RGGWCCY	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	668
PsuI	RGATCY	2 cut(s)	194, 366
RsaI	GTAC	2 cut(s)	88, 172
RsaNI	GTAC	2 cut(s)	87, 171
SalI	GTCGAC	1 cut(s)	150
SatI	GCNGC	3 cut(s)	399, 470, 591
Sau3AI	GATC	3 cut(s)	194, 366, 616
Sau96I	GGNCC	1 cut(s)	556
SchI	GAGTC	3 cut(s)	35, 107, 427
ScrFI	CCNGG	2 cut(s)	560, 561
SfaNI	GCATC	1 cut(s)	700
SfcI	CTRYAG	1 cut(s)	664
SinI	GGWCC	1 cut(s)	556
SmaI	CCCGGG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	469
SspMI	CTAG	6 cut(s)	174, 261, 275, 288, 371, 612
StyD4I	CCNGG	2 cut(s)	558, 559
TaaI	ACNGT	3 cut(s)	257, 438, 656
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	151, 506
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	573
TauI	GCSGC	1 cut(s)	472
TscAI	CASTG	3 cut(s)	227, 239, 274
TseI	GCWGC	2 cut(s)	398, 590
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	442
TspMI	CCCGGG	1 cut(s)	559
TspRI	CASTG	3 cut(s)	227, 239, 274
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	1 cut(s)	398
XmaI	CCCGGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	6 cut(s)	174, 261, 275, 288, 371, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.