Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Forward (+)

49505055 .. 49509752

Gene Structure 4698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTCTCGAAAGAGGCAAGGAATTTTCAGGAGGAGAAGGATCGTCATCGGGGTACTCGAGTCCGAGTCCCACCGATCATCATGACCAGCAGCAGCAGCCAGCGACGCCCAGCAGGTATGAGTCGCAGAAGAGGAGGGACTGGAACACTTTCGGGCAGTATTTGAAGAACCAGAGGCCCCCAGTCCCTCTCTCCCAGTGCAATTACAGCCATGTCCTCGAGTTCCTCAGGTACCTCGACCAGTTCGGGAAGACCAAAGTCCATCTCCAGGGCTGTATGTTTTACGGCCAGCCGGAGCCACCTGCACCTTGCACCTGTCCTCTCCGGCAGGCCTGGGGAAGCCTGGATGCTCTCATAGGGAGGCTGAGGGCTGCTTATGAGGAGAACGGTGGGGCCCCTGAGAGCAACCCTTTTGCGAGTGGTGCAATCAGGGTTTACTTGAGGGAGGTCAGGGAGTGTCAGGCCAAGGCTCGAGGGATTCCTTACAAGAAGAAGAAGAAGAAGTCGACGGCGACAACTCCGAGCGGCAGCAGCAGCAGAGGCGGAGGAGGAGGACCTGGAAATAGTGATCGTGATTCTTCAACAAGTTCTATCATGCACTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

202

Amino Acids

22.18

Weight (kDa)

9.42

Isoelectric Point (pI)

65.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	29 - 152	5.9e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
Acc36I	ACCTGC	2 cut(s)	105, 310
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	525
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	2 cut(s)	525, 543
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	2 cut(s)	56, 233
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	166, 582
AjnI	CCWGG	4 cut(s)	267, 332, 342, 556
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	3 cut(s)	58, 218, 471
AoxI	GGCC	5 cut(s)	176, 286, 330, 393, 462
ApaI	GGGCCC	1 cut(s)	397
ApeKI	GCWGC	7 cut(s)	91, 94, 97, 371, 528, 531, 534
ApoI	RAATTY	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	149
Asp718I	GGTACC	1 cut(s)	231
AspS9I	GGNCC	4 cut(s)	177, 393, 394, 554
AvaI	CYCGRG	3 cut(s)	58, 218, 471
AvaII	GGWCC	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	7 cut(s)	103, 106, 109, 358, 540, 543, 546
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	2 cut(s)	301, 525
BciT130I	CCWGG	4 cut(s)	269, 334, 344, 558
BcoDI	GTCTC	1 cut(s)	9
BfuAI	ACCTGC	2 cut(s)	105, 310
BisI	GCNGC	8 cut(s)	92, 95, 98, 372, 526, 529, 532, 535
BlsI	GCNGC	8 cut(s)	93, 96, 99, 373, 527, 530, 533, 536
Bme1390I	CCNGG	4 cut(s)	269, 334, 344, 558
Bme18I	GGWCC	1 cut(s)	554
BmeT110I	CYCGRG	3 cut(s)	58, 218, 471
BmgT120I	GGNCC	4 cut(s)	177, 393, 394, 554
BmiI	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
BmrFI	CCNGG	4 cut(s)	269, 334, 344, 558
BmrI	ACTGGG	2 cut(s)	176, 190
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	2 cut(s)	176, 190
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	460
BsaBI	GATNNNNATC	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	268, 333, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	4 cut(s)	146, 182, 196, 241
Bse21I	CCTNAGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	4 cut(s)	269, 334, 344, 558
BseDI	CCNNGG	3 cut(s)	268, 333, 465
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	3 cut(s)	241, 356, 390
BseNI	ACTGG	4 cut(s)	146, 182, 196, 241
BseRI	GAGGAG	5 cut(s)	48, 148, 395, 561, 564
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	7 cut(s)	103, 106, 109, 358, 540, 543, 546
BseYI	CCCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BshNI	GGYRCC	1 cut(s)	231
BsiHKCI	CYCGRG	3 cut(s)	58, 218, 471
BsiSI	CCGG	2 cut(s)	293, 325
BslFI	GGGAC	3 cut(s)	54, 152, 170
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	54, 152, 170
BsnI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BsoBI	CYCGRG	3 cut(s)	58, 218, 471
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	41, 76, 568
BspACI	CCGC	2 cut(s)	525, 543
BspANI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BspCNI	CTCAG	3 cut(s)	240, 357, 391
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
BspMI	ACCTGC	2 cut(s)	105, 310
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	525
BsrI	ACTGG	4 cut(s)	146, 182, 196, 241
BssECI	CCNNGG	3 cut(s)	268, 333, 465
BssMI	GATC	3 cut(s)	41, 76, 568
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	4 cut(s)	269, 334, 344, 558
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	102, 290, 330
BstDEI	CTNAG	3 cut(s)	227, 365, 399
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	3 cut(s)	44, 79, 571
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	41, 76, 568
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 106, 207, 422, 531, 534, 540
BstNI	CCWGG	4 cut(s)	269, 334, 344, 558
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	267, 332, 342, 556
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	7 cut(s)	103, 106, 109, 358, 540, 543, 546
BstV2I	GAAGAC	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	2 cut(s)	105, 310
Cac8I	GCNNGC	3 cut(s)	102, 290, 330
CciI	TCATGA	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	177, 393, 394, 554
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	55, 232
CviAII	CATG	3 cut(s)	83, 212, 595
CviQI	GTAC	2 cut(s)	55, 232
DdeI	CTNAG	3 cut(s)	227, 365, 399
DpnI	GATC	3 cut(s)	43, 78, 570
DpnII	GATC	3 cut(s)	41, 76, 568
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	554
Eco81I	CCTNAGG	1 cut(s)	227
Eco88I	CYCGRG	3 cut(s)	58, 218, 471
EcoO109I	RGGNCCY	4 cut(s)	177, 393, 394, 554
EcoRII	CCWGG	4 cut(s)	267, 332, 342, 556
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	86, 215, 598
FaiI	YATR	7 cut(s)	84, 120, 213, 278, 356, 378, 596
FaqI	GGGAC	3 cut(s)	54, 152, 170
FatI	CATG	3 cut(s)	82, 211, 594
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	8 cut(s)	92, 95, 98, 372, 526, 529, 532, 535
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	8 cut(s)	92, 95, 98, 372, 526, 529, 532, 535
GluI	GCNGC	8 cut(s)	92, 95, 98, 372, 526, 529, 532, 535
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	5 cut(s)	178, 288, 332, 395, 464
HapII	CCGG	2 cut(s)	293, 325
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	86, 215, 598
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	5 cut(s)	61, 67, 122, 478, 575
HpaII	CCGG	2 cut(s)	293, 325
Hpy166II	GTNNAC	2 cut(s)	436, 507
Hpy188I	TCNGA	2 cut(s)	66, 522
Hpy188III	TCNNGA	6 cut(s)	8, 30, 83, 247, 572, 606
Hpy8I	GTNNAC	2 cut(s)	436, 507
Hpy99I	CGWCG	2 cut(s)	109, 511
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	5 cut(s)	201, 305, 312, 425, 598
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 106, 207, 422, 531, 534, 540
HpyF3I	CTNAG	3 cut(s)	227, 365, 399
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	86, 215, 598
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	41, 76, 568
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	7 cut(s)	103, 106, 109, 358, 540, 543, 546
LweI	GCATC	1 cut(s)	337
MalI	GATC	3 cut(s)	43, 78, 570
MbiI	CCGCTC	1 cut(s)	525
MboI	GATC	3 cut(s)	41, 76, 568
MboII	GAAGA	8 cut(s)	142, 178, 262, 502, 505, 508, 511, 570
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	23, 202
MlyI	GAGTC	3 cut(s)	70, 76, 131
MroXI	GAANNNNTTC	1 cut(s)	149
MspI	CCGG	2 cut(s)	293, 325
MspR9I	CCNGG	4 cut(s)	269, 334, 344, 558
MvaI	CCWGG	4 cut(s)	269, 334, 344, 558
MwoI	GCNNNNNNNGC	7 cut(s)	97, 106, 207, 422, 531, 534, 540
NdeII	GATC	3 cut(s)	41, 76, 568
NlaIII	CATG	3 cut(s)	86, 215, 598
NlaIV	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
PaeR7I	CTCGAG	3 cut(s)	58, 218, 471
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	478, 575
PkrI	GCNGC	8 cut(s)	93, 96, 99, 373, 527, 530, 533, 536
PleI	GAGTC	3 cut(s)	69, 75, 130
PpsI	GAGTC	3 cut(s)	69, 75, 130
PpuMI	RGGWCCY	1 cut(s)	554
PshAI	GACNNNNGTC	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	4 cut(s)	267, 332, 342, 556
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	4 cut(s)	267, 332, 342, 556
PspN4I	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	4 cut(s)	177, 393, 394, 554
PspPPI	RGGWCCY	1 cut(s)	554
PspXI	VCTCGAGB	3 cut(s)	58, 218, 471
RsaI	GTAC	2 cut(s)	56, 233
RsaNI	GTAC	2 cut(s)	55, 232
SalI	GTCGAC	1 cut(s)	505
SatI	GCNGC	8 cut(s)	92, 95, 98, 372, 526, 529, 532, 535
Sau3AI	GATC	3 cut(s)	41, 76, 568
Sau96I	GGNCC	4 cut(s)	177, 393, 394, 554
SchI	GAGTC	3 cut(s)	70, 76, 131
ScrFI	CCNGG	4 cut(s)	269, 334, 344, 558
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	8 cut(s)	119, 233, 237, 304, 310, 317, 450, 559
SfaNI	GCATC	1 cut(s)	337
Sfr274I	CTCGAG	3 cut(s)	58, 218, 471
SinI	GGWCC	1 cut(s)	554
SlaI	CTCGAG	3 cut(s)	58, 218, 471
SmlI	CTYRAG	4 cut(s)	58, 218, 439, 471
SmoI	CTYRAG	4 cut(s)	58, 218, 439, 471
Sse9I	AATT	2 cut(s)	23, 202
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	2 cut(s)	525, 543
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	4 cut(s)	267, 332, 342, 556
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	6 cut(s)	9, 59, 219, 237, 472, 506
TasI	AATT	2 cut(s)	23, 202
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	2 cut(s)	478, 575
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	7 cut(s)	91, 94, 97, 371, 528, 531, 534
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	23
XhoI	CTCGAG	3 cut(s)	58, 218, 471
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.