Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Forward (+)

14755450 .. 14756007

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCTCTCGAAAGAGGCAAGGAATTCTCAGGAGGAGAAAGATCGTCATTGGGGTACTCGAGTCCGAGTCCCACCGATCATCATGACCAGCAGCAGCAGCCAGTGACGCTCAGTAGGCATGAGATGCAGAAGAGGAGGGACTGGAACACTTTCGGGCAGTACTTGAAGAACCAGAGGCCCCCAGTGCCTCCCTCCCAGTGCAATTACAGCCATGTTCTCGAGTTCCTCAGGTACCTCGACCAGTTCGGGAAGACCAAAGTCCATCTCCAGGGTTGTGTGTTTTACGGCCAGCCGGAGCCACCTGCGCCTTGCACCTGTCCTCTCCGGCAGGCCTGGGGAAGCCTGGATGCTCTCATAGGGAGGCTGAGGGCTGCTTATGAGGAGAACGGTGGGGCCCCCGAGAGCAATCCTTTTGCTGGTGGTGCAATCAGGGGGTACTTGAGGGAGGTCAGGGAGTGTCAGGCCAAGGCTAGAGGGATTCCTTACAATAATAAGAAGAAGAAGCCTGGAAATAGTGATCGTGATTCTTCAACAAGTTCTATCATGCACTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

185

Amino Acids

20.83

Weight (kDa)

9.26

Isoelectric Point (pI)

63.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	29 - 152	2e-63	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
Acc36I	ACCTGC	1 cut(s)	310
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	4 cut(s)	56, 161, 233, 437
AfiI	CCNNNNNNNGG	2 cut(s)	268, 416
AgsI	TTSAA	2 cut(s)	166, 531
AjnI	CCWGG	4 cut(s)	267, 332, 342, 505
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	3 cut(s)	58, 218, 398
AoxI	GGCC	5 cut(s)	176, 286, 330, 393, 462
ApaI	GGGCCC	1 cut(s)	397
ApeKI	GCWGC	4 cut(s)	91, 94, 97, 371
ApoI	RAATTY	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	149
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	177, 393, 394
AvaI	CYCGRG	3 cut(s)	58, 218, 398
AxyI	CCTNAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	4 cut(s)	103, 106, 109, 358
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	4 cut(s)	269, 334, 344, 507
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	4 cut(s)	92, 95, 98, 372
BlsI	GCNGC	4 cut(s)	93, 96, 99, 373
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	4 cut(s)	269, 334, 344, 507
BmeT110I	CYCGRG	3 cut(s)	58, 218, 398
BmgT120I	GGNCC	3 cut(s)	177, 393, 394
BmiI	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
BmrFI	CCNGG	4 cut(s)	269, 334, 344, 507
BmrI	ACTGGG	2 cut(s)	176, 190
BmsI	GCATC	2 cut(s)	114, 337
BmuI	ACTGGG	2 cut(s)	176, 190
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	460
BsaJI	CCNNGG	3 cut(s)	268, 333, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 416
Bse1I	ACTGG	5 cut(s)	101, 146, 182, 196, 241
Bse21I	CCTNAGG	1 cut(s)	227
BseBI	CCWGG	4 cut(s)	269, 334, 344, 507
BseDI	CCNNGG	3 cut(s)	268, 333, 465
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	268, 416
BseMII	CTCAG	4 cut(s)	42, 124, 241, 356
BseNI	ACTGG	5 cut(s)	101, 146, 182, 196, 241
BseRI	GAGGAG	3 cut(s)	48, 148, 395
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	4 cut(s)	103, 106, 109, 358
BshFI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BshNI	GGYRCC	1 cut(s)	231
BsiHKCI	CYCGRG	3 cut(s)	58, 218, 398
BsiSI	CCGG	2 cut(s)	293, 325
BslFI	GGGAC	2 cut(s)	54, 152
BslI	CCNNNNNNNGG	2 cut(s)	268, 416
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	54, 152
BsnI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BsoBI	CYCGRG	3 cut(s)	58, 218, 398
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	41, 76, 517
BspANI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BspCNI	CTCAG	4 cut(s)	41, 123, 240, 357
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
BspMI	ACCTGC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	231
BsrI	ACTGG	5 cut(s)	101, 146, 182, 196, 241
BssECI	CCNNGG	3 cut(s)	268, 333, 465
BssMI	GATC	3 cut(s)	41, 76, 517
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	4 cut(s)	269, 334, 344, 507
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	290, 330
BstDEI	CTNAG	4 cut(s)	28, 110, 227, 365
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	3 cut(s)	44, 79, 520
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	41, 76, 517
BstMWI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 124, 184, 207, 304, 422
BstNI	CCWGG	4 cut(s)	269, 334, 344, 507
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	267, 332, 342, 505
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	4 cut(s)	103, 106, 109, 358
BstV2I	GAAGAC	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	3 cut(s)	108, 189, 203
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	290, 330
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	177, 393, 394
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	55, 160, 232, 436
CviAII	CATG	4 cut(s)	83, 119, 212, 544
CviQI	GTAC	4 cut(s)	55, 160, 232, 436
DdeI	CTNAG	4 cut(s)	28, 110, 227, 365
DpnI	GATC	3 cut(s)	43, 78, 519
DpnII	GATC	3 cut(s)	41, 76, 517
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	397
Eco81I	CCTNAGG	1 cut(s)	227
Eco88I	CYCGRG	3 cut(s)	58, 218, 398
EcoO109I	RGGNCCY	3 cut(s)	177, 393, 394
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	4 cut(s)	267, 332, 342, 505
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	4 cut(s)	86, 122, 215, 547
FaiI	YATR	6 cut(s)	84, 120, 213, 356, 378, 545
FaqI	GGGAC	2 cut(s)	54, 152
FatI	CATG	4 cut(s)	82, 118, 211, 543
Fnu4HI	GCNGC	4 cut(s)	92, 95, 98, 372
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	4 cut(s)	92, 95, 98, 372
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	4 cut(s)	92, 95, 98, 372
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	5 cut(s)	178, 288, 332, 395, 464
HapII	CCGG	2 cut(s)	293, 325
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	4 cut(s)	86, 122, 215, 547
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	4 cut(s)	61, 67, 478, 524
HpaII	CCGG	2 cut(s)	293, 325
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	6 cut(s)	8, 30, 83, 218, 247, 521
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	5 cut(s)	127, 201, 312, 425, 547
HpyF10VI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 124, 184, 207, 304, 422
HpyF3I	CTNAG	4 cut(s)	28, 110, 227, 365
Hsp92II	CATG	4 cut(s)	86, 122, 215, 547
HspAI	GCGC	1 cut(s)	305
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	41, 76, 517
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	4 cut(s)	103, 106, 109, 358
LweI	GCATC	2 cut(s)	114, 337
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	3 cut(s)	43, 78, 519
MboI	GATC	3 cut(s)	41, 76, 517
MboII	GAAGA	6 cut(s)	142, 178, 262, 508, 511, 519
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	23, 202
MlyI	GAGTC	2 cut(s)	70, 76
MroXI	GAANNNNTTC	1 cut(s)	149
MspI	CCGG	2 cut(s)	293, 325
MspR9I	CCNGG	4 cut(s)	269, 334, 344, 507
MvaI	CCWGG	4 cut(s)	269, 334, 344, 507
MwoI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 124, 184, 207, 304, 422
NdeII	GATC	3 cut(s)	41, 76, 517
NlaIII	CATG	4 cut(s)	86, 122, 215, 547
NlaIV	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
NmuCI	GTSAC	1 cut(s)	103
PaeR7I	CTCGAG	2 cut(s)	58, 218
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	478, 524
PkrI	GCNGC	4 cut(s)	93, 96, 99, 373
PleI	GAGTC	2 cut(s)	69, 75
PpsI	GAGTC	2 cut(s)	69, 75
PshAI	GACNNNNGTC	1 cut(s)	257
Psp6I	CCWGG	4 cut(s)	267, 332, 342, 505
PspGI	CCWGG	4 cut(s)	267, 332, 342, 505
PspN4I	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	3 cut(s)	177, 393, 394
PspXI	VCTCGAGB	1 cut(s)	58
RsaI	GTAC	4 cut(s)	56, 161, 233, 437
RsaNI	GTAC	4 cut(s)	55, 160, 232, 436
SatI	GCNGC	4 cut(s)	92, 95, 98, 372
Sau3AI	GATC	3 cut(s)	41, 76, 517
Sau96I	GGNCC	3 cut(s)	177, 393, 394
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	2 cut(s)	70, 76
ScrFI	CCNGG	4 cut(s)	269, 334, 344, 507
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	5 cut(s)	233, 237, 304, 317, 450
SfaNI	GCATC	2 cut(s)	114, 337
Sfr274I	CTCGAG	2 cut(s)	58, 218
SlaI	CTCGAG	2 cut(s)	58, 218
SmlI	CTYRAG	3 cut(s)	58, 218, 439
SmoI	CTYRAG	3 cut(s)	58, 218, 439
Sse9I	AATT	2 cut(s)	23, 202
SseBI	AGGCCT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	4 cut(s)	267, 332, 342, 505
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	4 cut(s)	9, 59, 219, 237
TasI	AATT	2 cut(s)	23, 202
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	478, 524
TscAI	CASTG	3 cut(s)	108, 189, 203
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	4 cut(s)	91, 94, 97, 371
Tsp45I	GTSAC	1 cut(s)	103
TspRI	CASTG	3 cut(s)	108, 189, 203
XapI	RAATTY	1 cut(s)	23
XhoI	CTCGAG	2 cut(s)	58, 218
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	471
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.