AT2G42660
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014927
Physical Location & Seq
Reverse (-)
17767050 .. 17768379
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42660.1

Sequence Viewer

Length: 768 bp
ATGGCCGGGAGATCTTCGCCGGGAAAATGCTCCACGTGGCTTGACCTGAACAGAGAAGAAACAGTGGAGAAGAACAATGAAGAAGAGTCATCAGTGGAAGACGAAGACCAAATCACGAATAACGTTAGACAGTATATTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGATCTTCATCTCTCCTTCGTTCGTGCTGTCCAACGACTAGGCGGTCCAGACAGAGCGACGCCGAAATTGGTTCTTGAGATGATGAATCTAAAAGGATTGAGTATTGCACATGTCAAGAGTCATTTACAGATGTATCGAAGTAAGAAGCTCGAGCCGTCTTCTCGCCCTGGATTTGGAGCTTTCATGAGTGGACAAAGAAGCTATTTGATGGACATGATCGACTCTCGATGTATCCCTCATAGCGATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCGGTCGTTACAAATCTTGGAGGTAACTTTCTTATGCGACCTTCGAGCTGGTTTAGCGGGTTATGCAGAAATGACCGAGACAGCACAGAGAACAAGACTCTGCCTCTACTCGAGATTAGGAAGAAGAACAATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCAATGTCCGGAGGTGGGATACAGTTGCCTGAGTTTGGAAATTGCAGGCAAAAACCAACAGATGATATCAACACAATGCTCTCGCTCTCTCTGTTGTCGACATCATCAGAACCGTAA

Protein Analysis

255

Amino Acids

28.91

Weight (kDa)

9.32

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 52 - 103 1.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 749
AccII CGCG 1 cut(s) 473
AccIII TCCGGA 1 cut(s) 659
AciI CCGC 3 cut(s) 213, 473, 528
AclI AACGTT 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 36
AcyI GRCGYC 2 cut(s) 167, 230
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 3 cut(s) 344, 666, 686
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 649
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 4 cut(s) 319, 350, 372, 519
AluI AGCT 4 cut(s) 319, 350, 372, 519
Alw26I GTCTC 1 cut(s) 543
Ama87I CYCGRG 2 cut(s) 320, 581
Aor13HI TCCGGA 1 cut(s) 659
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspS9I GGNCC 2 cut(s) 141, 215
AsuC2I CCSGG 2 cut(s) 7, 21
AvaI CYCGRG 2 cut(s) 320, 581
AvaII GGWCC 2 cut(s) 141, 215
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BbrPI CACGTG 1 cut(s) 36
BbsI GAAGAC 3 cut(s) 105, 111, 321
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 2 cut(s) 413, 663
BcnI CCSGG 2 cut(s) 7, 21
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 1 cut(s) 209
BfuI GTATCC 2 cut(s) 413, 663
BglII AGATCT 1 cut(s) 11
Bme1390I CCNGG 3 cut(s) 7, 21, 339
Bme18I GGWCC 2 cut(s) 141, 215
BmeT110I CYCGRG 2 cut(s) 320, 581
BmgT120I GGNCC 2 cut(s) 141, 215
BmrFI CCNGG 3 cut(s) 7, 21, 339
BpiI GAAGAC 3 cut(s) 105, 111, 321
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 7, 21
BsaAI YACGTR 1 cut(s) 36
BsaBI GATNNNNATC 2 cut(s) 177, 649
BsaHI GRCGYC 2 cut(s) 167, 230
BsaJI CCNNGG 2 cut(s) 152, 337
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 666, 686
Bse8I GATNNNNATC 2 cut(s) 177, 649
BseAI TCCGGA 1 cut(s) 659
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 152, 337
BseJI GATNNNNATC 2 cut(s) 177, 649
BseLI CCNNNNNNNGG 3 cut(s) 344, 666, 686
BseMII CTCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 477
BsiHKCI CYCGRG 2 cut(s) 320, 581
BsiSI CCGG 3 cut(s) 6, 20, 660
BslI CCNNNNNNNGG 3 cut(s) 344, 666, 686
BsmAI GTCTC 1 cut(s) 543
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 320, 581
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 3 cut(s) 11, 172, 387
BspACI CCGC 3 cut(s) 213, 473, 528
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 673
BspEI TCCGGA 1 cut(s) 659
BspFNI CGCG 1 cut(s) 473
BspHI TCATGA 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 152, 337
BssMI GATC 3 cut(s) 11, 172, 387
BssNI GRCGYC 2 cut(s) 167, 230
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 5 cut(s) 64, 132, 445, 675, 765
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 2 cut(s) 167, 230
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 698
BstDEI CTNAG 1 cut(s) 681
BstFNI CGCG 1 cut(s) 473
BstKTI GATC 3 cut(s) 14, 175, 390
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 3 cut(s) 11, 172, 387
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 2 cut(s) 525, 534
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 3 cut(s) 151, 284, 428
BstSCI CCNGG 3 cut(s) 5, 19, 337
BstUI CGCG 1 cut(s) 473
BstV2I GAAGAC 3 cut(s) 105, 111, 321
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuI GTATCC 2 cut(s) 413, 663
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 69, 99
Cac8I GCNNGC 1 cut(s) 698
CciI TCATGA 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 141, 215
CseI GACGC 3 cut(s) 175, 238, 479
Csp6I GTAC 1 cut(s) 458
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 5 cut(s) 148, 281, 355, 385, 425
CviJI RGCY 8 cut(s) 5, 40, 157, 319, 325, 350, 372, 519
CviKI_1 RGCY 8 cut(s) 5, 40, 157, 319, 325, 350, 372, 519
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 1 cut(s) 681
DpnI GATC 3 cut(s) 13, 174, 389
DpnII GATC 3 cut(s) 11, 172, 387
DrdI GACNNNNNNGTC 1 cut(s) 213
DseDI GACNNNNNNGTC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 141, 215
Eco72I CACGTG 1 cut(s) 36
Eco88I CYCGRG 2 cut(s) 320, 581
EcoRII CCWGG 1 cut(s) 337
EcoRV GATATC 1 cut(s) 718
FaeI CATG 5 cut(s) 151, 284, 358, 388, 428
FatI CATG 5 cut(s) 147, 280, 354, 384, 424
FauI CCCGC 1 cut(s) 521
FblI GTMKAC 1 cut(s) 749
FspBI CTAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 6, 20, 660
HgaI GACGC 3 cut(s) 175, 238, 479
Hin1I GRCGYC 2 cut(s) 167, 230
Hin1II CATG 5 cut(s) 151, 284, 358, 388, 428
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HinfI GANTC 6 cut(s) 86, 256, 289, 392, 568, 612
HpaII CCGG 3 cut(s) 6, 20, 660
Hpy166II GTNNAC 2 cut(s) 362, 750
Hpy188I TCNGA 2 cut(s) 617, 760
Hpy188III TCNNGA 9 cut(s) 115, 218, 245, 286, 355, 396, 467, 583, 660
Hpy8I GTNNAC 2 cut(s) 362, 750
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 3 cut(s) 196, 459, 522
HpyCH4III ACNGT 5 cut(s) 64, 132, 445, 675, 765
HpyCH4IV ACGT 2 cut(s) 35, 123
HpyCH4V TGCA 3 cut(s) 278, 537, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 525, 534
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 2 cut(s) 35, 123
Hsp92I GRCGYC 2 cut(s) 167, 230
Hsp92II CATG 5 cut(s) 151, 284, 358, 388, 428
Kpn2I TCCGGA 1 cut(s) 659
Kzo9I GATC 3 cut(s) 11, 172, 387
LmnI GCTCC 2 cut(s) 35, 347
MaeI CTAG 1 cut(s) 209
MaeII ACGT 2 cut(s) 35, 123
MaeIII GTNAC 2 cut(s) 478, 494
MalI GATC 3 cut(s) 13, 174, 389
MboI GATC 3 cut(s) 11, 172, 387
MflI RGATCY 1 cut(s) 11
MluCI AATT 2 cut(s) 236, 691
MlyI GAGTC 5 cut(s) 95, 298, 386, 562, 621
MmeI TCCRAC 3 cut(s) 143, 168, 226
MnlI CCTC 6 cut(s) 162, 417, 447, 485, 585, 656
MroI TCCGGA 1 cut(s) 659
MseI TTAA 1 cut(s) 419
MspI CCGG 3 cut(s) 6, 20, 660
MspR9I CCNGG 3 cut(s) 7, 21, 339
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 525, 534
NciI CCSGG 2 cut(s) 7, 21
NdeII GATC 3 cut(s) 11, 172, 387
NlaIII CATG 5 cut(s) 151, 284, 358, 388, 428
NmeAIII GCCGAG 1 cut(s) 133
NspI RCATGY 3 cut(s) 151, 284, 428
PaeR7I CTCGAG 2 cut(s) 320, 581
PagI TCATGA 1 cut(s) 354
PciI ACATGT 1 cut(s) 280
PfeI GAWTC 1 cut(s) 256
PflFI GACNNNGTC 1 cut(s) 473
PleI GAGTC 5 cut(s) 94, 297, 386, 562, 620
PmaCI CACGTG 1 cut(s) 36
PmlI CACGTG 1 cut(s) 36
PpsI GAGTC 5 cut(s) 94, 297, 386, 562, 620
Ppu21I YACGTR 1 cut(s) 36
PscI ACATGT 1 cut(s) 280
Psp1406I AACGTT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 337
PspPI GGNCC 2 cut(s) 141, 215
PspXI VCTCGAGB 1 cut(s) 320
PsuI RGATCY 1 cut(s) 11
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
SalI GTCGAC 1 cut(s) 748
SaqAI TTAA 1 cut(s) 419
Sau3AI GATC 3 cut(s) 11, 172, 387
Sau96I GGNCC 2 cut(s) 141, 215
SchI GAGTC 5 cut(s) 95, 298, 386, 562, 621
ScrFI CCNGG 3 cut(s) 7, 21, 339
Sfr274I CTCGAG 2 cut(s) 320, 581
SinI GGWCC 2 cut(s) 141, 215
SlaI CTCGAG 2 cut(s) 320, 581
SmlI CTYRAG 3 cut(s) 245, 320, 581
SmoI CTYRAG 3 cut(s) 245, 320, 581
Sse9I AATT 2 cut(s) 236, 691
SsiI CCGC 3 cut(s) 213, 473, 528
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 3 cut(s) 5, 19, 337
TaaI ACNGT 5 cut(s) 64, 132, 445, 675, 765
TaiI ACGT 2 cut(s) 38, 126
TaqI TCGA 8 cut(s) 307, 321, 390, 397, 452, 515, 582, 749
TaqII GACCGA 2 cut(s) 129, 561
TasI AATT 2 cut(s) 236, 691
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 2 cut(s) 69, 99
TspDTI ATGAA 5 cut(s) 93, 167, 269, 343, 636
TspRI CASTG 2 cut(s) 69, 99
Tth111I GACNNNGTC 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 141, 215
XceI RCATGY 3 cut(s) 151, 284, 428
XhoI CTCGAG 2 cut(s) 320, 581
XmiI GTMKAC 1 cut(s) 749
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.