Rh2CG329200
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014927
Physical Location & Seq
Reverse (-)
42919254 .. 42923287
4034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG329200.1

Sequence Viewer

Length: 1002 bp
ATGGCTGATCCTGAGATGATTGAGATTTCTGTTGAAGTGGATGATGACCAAAGTACTACTGATGGAAGTAAAGATTTTCGATCTAAAAGCTCTTCTCCGAAAGCATCATGTTTGTTCTTTGACTTGAATGAGGATGCAACTAGTGATGATCATGGGGATGTTTCAAAAAATATAGGTGAAGCTAGGGAAAGAAAAACATCTACAGAAGGGAAAGAACAGACGGCAACCAGCAGCGGTGCAGTCAGGCAATATGTTCGATCAAAAATGCCAAGGCTTCGTTGGACTTCTGATCTCCATCTAGCATTCATTCATGCCGTTGGGAGGCTCGGAGGACAAGAAAGAGCAACTCCAAAATTAGTACTTCAGTTGATGAATGTGAGAGGACTCAGCATTGCTCACGTCAAGAGTCATTTGCAGATGTATCGAAGCAAGAAGCTCGATGAGTCCGGCCAAGTGTTACCTCAGTTCAATAGATCGAGGGGAATGTTGTTGCAAGGAAGAGAGCACATTGTGGAAGCCTATCAACAGTACAATCCTTTCAGGCACTTCAGACTTGATGACAGAGGAAGCCATTTTCCTTCTCCACCATTAAAACATCAGCCATATGATAATTTGAATGCCAACTCTTCAAGGTTGATTTCACAGTGGAGCAATTCTGGGATGGAGAACCATCGGAGCATCAATACAATTACAAGCTCACATATGTCTAGTGTAAAGGAAGTCATGACAAGAGTTAATGGACCTATTAGATCCAGCCGGTTTCTTGAGGAGAAGAGATGGCCTCCTCGTGAGATGATAGGAAATCACATTAGAGGCAGGAGACATTCTCTAAACATTTCTTGGGGTAATACCATCAATGCCGCACAACCTAATTCAGTAGGGAGTCCCCAGGCAAGCTCCAACCGACATCTACCCAATCATACTACATGTTCTCCAAAGTTCATCTCCAGCAGCTACGAACCCGTATCTGATCCGCACGAGGTAATTATTACACATTTATAG

Protein Analysis

333

Amino Acids

37.6

Weight (kDa)

9.43

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 91 - 142 1.6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 234, 861, 974
AclWI GGATC 3 cut(s) 2, 744, 965
AcoI YGGCCR 1 cut(s) 448
AcuI CTGAAG 2 cut(s) 347, 532
AdeI CACNNNGTG 1 cut(s) 511
AfaI GTAC 3 cut(s) 55, 360, 530
AfiI CCNNNNNNNGG 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 926
AgsI TTSAA 6 cut(s) 35, 127, 165, 469, 616, 630
AhlI ACTAGT 1 cut(s) 140
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 888
AluBI AGCT 6 cut(s) 90, 182, 436, 696, 897, 954
AluI AGCT 6 cut(s) 90, 182, 436, 696, 897, 954
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 814
AlwI GGATC 3 cut(s) 2, 744, 965
AoxI GGCC 2 cut(s) 448, 779
ApeKI GCWGC 2 cut(s) 231, 951
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 740
BauI CACGAG 2 cut(s) 786, 977
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 243, 963
BccI CCATC 6 cut(s) 56, 303, 655, 678, 771, 860
BceAI ACGGC 2 cut(s) 237, 299
BcgI CGANNNNNNTGC 6 cut(s) 236, 270, 404, 418, 438, 452
BciT130I CCWGG 1 cut(s) 890
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 814
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 4 cut(s) 141, 183, 299, 708
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 3 cut(s) 232, 861, 952
BlsI GCNGC 3 cut(s) 233, 862, 953
BmcAI AGTACT 2 cut(s) 55, 360
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 1 cut(s) 740
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 740
BmrFI CCNGG 1 cut(s) 890
BmsI GCATC 3 cut(s) 113, 124, 687
BplI GAGNNNNNCTC 4 cut(s) 766, 798, 811, 843
BpmI CTGGAG 1 cut(s) 931
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 269, 888
BsaXI ACNNNNNCTCC 2 cut(s) 916, 946
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 756
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 890
BseDI CCNNGG 2 cut(s) 269, 888
BseGI GGATG 4 cut(s) 46, 139, 163, 666
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 400, 476
BseRI GAGGAG 2 cut(s) 774, 782
BseXI GCAGC 2 cut(s) 243, 963
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 450, 781
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 2 cut(s) 447, 757
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 814
BsmFI GGGAC 1 cut(s) 870
BsmI GAATGC 2 cut(s) 302, 622
BsnI GGCC 2 cut(s) 450, 781
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
BspACI CCGC 3 cut(s) 234, 861, 974
BspANI GGCC 2 cut(s) 450, 781
BspCNI CTCAG 3 cut(s) 4, 399, 475
BspHI TCATGA 1 cut(s) 723
BspPI GGATC 3 cut(s) 2, 744, 965
BspQI GCTCTTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 756
BssAI RCCGGY 1 cut(s) 756
BssECI CCNNGG 2 cut(s) 269, 888
BssMI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
BssSI CACGAG 2 cut(s) 786, 977
BssT1I CCWWGG 1 cut(s) 269
Bst2BI CACGAG 2 cut(s) 786, 977
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 2 cut(s) 528, 645
Bst6I CTCTTC 4 cut(s) 97, 493, 631, 767
BstC8I GCNNGC 1 cut(s) 895
BstDEI CTNAG 3 cut(s) 12, 386, 462
BstF5I GGATG 4 cut(s) 46, 139, 163, 666
BstKTI GATC 8 cut(s) 10, 83, 151, 260, 292, 476, 752, 973
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
BstNI CCWGG 1 cut(s) 890
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 243, 963
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 2 cut(s) 450, 781
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 4 cut(s) 46, 139, 163, 666
BtsIMutI CAGTG 1 cut(s) 650
Cac8I GCNNGC 1 cut(s) 895
CciI TCATGA 1 cut(s) 723
Cfr10I RCCGGY 1 cut(s) 756
Cfr13I GGNCC 1 cut(s) 740
Csp6I GTAC 3 cut(s) 54, 359, 529
CviAII CATG 5 cut(s) 108, 152, 311, 724, 927
CviQI GTAC 3 cut(s) 54, 359, 529
DdeI CTNAG 3 cut(s) 12, 386, 462
DpnI GATC 8 cut(s) 9, 82, 150, 259, 291, 475, 751, 972
DpnII GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
DraIII CACNNNGTG 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 4 cut(s) 97, 493, 631, 767
EarI CTCTTC 4 cut(s) 97, 493, 631, 767
Eco130I CCWWGG 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 347, 532
EcoRII CCWGG 1 cut(s) 888
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 5 cut(s) 111, 155, 314, 727, 930
FaqI GGGAC 1 cut(s) 870
FatI CATG 5 cut(s) 107, 151, 310, 723, 926
FauNDI CATATG 2 cut(s) 604, 702
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 232, 861, 952
FokI GGATG 4 cut(s) 53, 146, 170, 673
Fsp4HI GCNGC 3 cut(s) 232, 861, 952
FspBI CTAG 4 cut(s) 141, 183, 299, 708
GluI GCNGC 3 cut(s) 232, 861, 952
GsuI CTGGAG 1 cut(s) 931
HaeIII GGCC 2 cut(s) 450, 781
HapII CCGG 2 cut(s) 447, 757
Hin1II CATG 5 cut(s) 111, 155, 314, 727, 930
HinfI GANTC 4 cut(s) 384, 406, 443, 883
HpaII CCGG 2 cut(s) 447, 757
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 6 cut(s) 99, 289, 329, 551, 675, 970
Hpy188III TCNNGA 5 cut(s) 11, 403, 724, 764, 788
HpyAV CCTTC 2 cut(s) 200, 588
HpyCH4III ACNGT 2 cut(s) 528, 645
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 4 cut(s) 137, 239, 415, 493
HpyF3I CTNAG 3 cut(s) 12, 386, 462
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 5 cut(s) 111, 155, 314, 727, 930
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 3 cut(s) 648, 675, 902
Lsp1109I GCAGC 2 cut(s) 243, 963
LweI GCATC 3 cut(s) 113, 124, 687
MaeI CTAG 4 cut(s) 141, 183, 299, 708
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 456
MalI GATC 8 cut(s) 9, 82, 150, 259, 291, 475, 751, 972
MboI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
MboII GAAGA 4 cut(s) 84, 510, 618, 784
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 6 cut(s) 353, 610, 652, 687, 871, 984
MlyI GAGTC 4 cut(s) 378, 415, 452, 892
MmeI TCCRAC 2 cut(s) 260, 924
MseI TTAA 2 cut(s) 590, 735
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 2 cut(s) 447, 757
MspR9I CCNGG 1 cut(s) 890
Mva1269I GAATGC 2 cut(s) 302, 622
MvaI CCWGG 1 cut(s) 890
NdeI CATATG 2 cut(s) 604, 702
NdeII GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
NlaIII CATG 5 cut(s) 111, 155, 314, 727, 930
NspI RCATGY 1 cut(s) 930
PagI TCATGA 1 cut(s) 723
PciI ACATGT 1 cut(s) 926
PciSI GCTCTTC 1 cut(s) 97
PctI GAATGC 2 cut(s) 302, 622
PkrI GCNGC 3 cut(s) 233, 862, 953
PleI GAGTC 4 cut(s) 378, 414, 451, 891
PpsI GAGTC 4 cut(s) 378, 414, 451, 891
PscI ACATGT 1 cut(s) 926
Psp6I CCWGG 1 cut(s) 888
PspGI CCWGG 1 cut(s) 888
PspPI GGNCC 1 cut(s) 740
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 3 cut(s) 55, 360, 530
RsaNI GTAC 3 cut(s) 54, 359, 529
RseI CAYNNNNRTG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 590, 735
SatI GCNGC 3 cut(s) 232, 861, 952
Sau3AI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 749, 970
Sau96I GGNCC 1 cut(s) 740
ScaI AGTACT 2 cut(s) 55, 360
SchI GAGTC 4 cut(s) 378, 415, 452, 892
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 3 cut(s) 113, 124, 687
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 6 cut(s) 353, 610, 652, 687, 871, 984
SsiI CCGC 3 cut(s) 234, 861, 974
SspMI CTAG 4 cut(s) 141, 183, 299, 708
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 528, 645
TaiI ACGT 1 cut(s) 402
TaqI TCGA 5 cut(s) 79, 256, 424, 438, 476
TasI AATT 6 cut(s) 353, 610, 652, 687, 871, 984
TatI WGTACW 3 cut(s) 53, 358, 528
TauI GCSGC 1 cut(s) 863
Tru1I TTAA 2 cut(s) 590, 735
Tru9I TTAA 2 cut(s) 590, 735
TscAI CASTG 1 cut(s) 650
TseI GCWGC 2 cut(s) 231, 951
TspDTI ATGAA 4 cut(s) 295, 299, 386, 931
TspRI CASTG 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 740
XceI RCATGY 1 cut(s) 930
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 4 cut(s) 141, 183, 299, 708
ZrmI AGTACT 2 cut(s) 55, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.