RLG00000019115
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014927
Physical Location & Seq
Reverse (-)
46675926 .. 46680028
4103 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019115

Sequence Viewer

Length: 1284 bp
ATGGCCGATCCTGAGATGATTGAGATTTCTGTTGAAGCGGATGATGACCAAAGTACTACTGATGGAAGTAAAGAAATTCGATCTAAAAGCTCTTCTCCGAAAGCATCATGTTTGTTCTTTGACTTGAATGAGGATGCAAGTAGTGATGATCATGTGGATGTTTCAAACAATATAGGTGAAGCTAGGGAAAGCAAAACATCTACAGAAGGGAAAGAACAGACGGCAAACAGCAGCGGTGCAGTCAGGCAATATGTTCGATCAAAAATGCCAAGGCTTCGTTGGACTTCTGATCTCCATCTAGCATTCATTCATGCCGTTGAGAGGCTCGGAGGACAAGAAAGAGCAACTCCAAAATTAGTACTTCAGTTGATGAATGTGAGAGGACTCAGCATTGCTCACGTCAAGAGTCATTTGCAGATGTATCGAAGCAAGAAGCTCGATGAGTCCGGCCAAGTGTTACCTCAGTTCAATAGATCGAGGGGAATGTTGTTGCAAGGAAGAGAGCACATTGTGGAGGCCTATCAACAGTGCAATCCTTTCAGGCACTTCAAACTTGATGACAGAGGAAGCCATATTGCTTCTCCACCGTTAAAACATCAGCCATATGATAATTTGAATGGCAACTCTTCAAGGTTGATTTCACAGTGGAGCAATTCTGGGATGGAGAACCATCGGAGCATCAATACAATTACAAGCTCACATATGTTTAGTGTAAAGGAAGCCATGACAAGACTTAATGGACCTATTAGACCCAGCCGGTTTCTTGAAGAGAAGAGATGGCCTCCTCATGCGATGATAGGAAATCACATTAGAGGCAGGAGACATTCTCTAAACATTTCTTGGGGTAATACCATCAATTTCGCACAACCTAATTCAGTAGGGAGTCCCCAGGCAAGCTCCAACCTTCATCTACCCAATTATGCTACATGTACTCCAAAGTTCATCTCCAGCAGCTACGAACCCTTATCTGATCCGCACGAGGTTCGGAAACCTGATGAAAGCATAAATGGCGAAACATTTGGAGCAGAAGTTGGTGATAATATGCAAACTTTGAAACAAAAGAAATGGCTACCTTCGAATTTACAGTTGGGCCTGCGGCAAGAATTCAGTATCTGCAGTGACGAGATGAAGGATGGTGAACAAGAAAGCACGAGAGACATTGTAACAACGCTTTCTCTATCCTTATCCTCGTCTTCACCAAGGCAACAAGATCAATCCAGTACACCCACATCAAGAGTTCGACTCTTGTCATTTCCTCTCTCTCCTGGCCTTAAACCTACTTAA

Protein Analysis

428

Amino Acids

47.83

Weight (kDa)

8.27

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 91 - 142 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 38, 234, 974, 1096
AclWI GGATC 2 cut(s) 2, 965
AcoI YGGCCR 2 cut(s) 3, 448
AcsI RAATTY 3 cut(s) 75, 1078, 1103
AcuI CTGAAG 1 cut(s) 347
AdeI CACNNNGTG 1 cut(s) 511
AfaI GTAC 4 cut(s) 55, 360, 931, 1222
AfiI CCNNNNNNNGG 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 926
AgsI TTSAA 9 cut(s) 35, 127, 165, 469, 550, 616, 630, 767, 1054
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 2 cut(s) 888, 1264
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
AluBI AGCT 6 cut(s) 90, 182, 436, 696, 897, 954
AluI AGCT 6 cut(s) 90, 182, 436, 696, 897, 954
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 2 cut(s) 814, 1149
AlwI GGATC 2 cut(s) 2, 965
AlwNI CAGNNNCTG 1 cut(s) 1113
AoxI GGCC 6 cut(s) 3, 448, 516, 779, 1090, 1267
ApeKI GCWGC 2 cut(s) 231, 951
ApoI RAATTY 3 cut(s) 75, 1078, 1103
AspS9I GGNCC 2 cut(s) 740, 1090
AsuHPI GGTGA 4 cut(s) 188, 1046, 1148, 1188
AsuII TTCGAA 1 cut(s) 1076
AvaII GGWCC 1 cut(s) 740
BauI CACGAG 2 cut(s) 977, 1150
BbsI GAAGAC 1 cut(s) 1185
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 243, 963
BccI CCATC 7 cut(s) 56, 303, 655, 678, 771, 860, 1127
BceAI ACGGC 2 cut(s) 237, 299
BcgI CGANNNNNNTGC 8 cut(s) 236, 270, 404, 418, 438, 452, 965, 999
BciT130I CCWGG 2 cut(s) 890, 1266
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 814, 1149
BfaI CTAG 2 cut(s) 183, 299
BfmI CTRYAG 2 cut(s) 201, 1114
BisI GCNGC 3 cut(s) 232, 952, 1097
BlsI GCNGC 3 cut(s) 233, 953, 1098
BmcAI AGTACT 2 cut(s) 55, 360
Bme1390I CCNGG 2 cut(s) 890, 1266
Bme18I GGWCC 1 cut(s) 740
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 740, 1090
BmrFI CCNGG 2 cut(s) 890, 1266
BmsI GCATC 3 cut(s) 113, 124, 687
BoxI GACNNNNGTC 1 cut(s) 1246
BpiI GAAGAC 1 cut(s) 1185
BplI GAGNNNNNCTC 6 cut(s) 766, 798, 811, 843, 1227, 1259
BpmI CTGGAG 1 cut(s) 931
Bpu14I TTCGAA 1 cut(s) 1076
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 269, 888, 1199
BsaXI ACNNNNNCTCC 4 cut(s) 916, 946, 1014, 1044
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 756
Bse1I ACTGG 1 cut(s) 1218
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 2 cut(s) 890, 1266
BseDI CCNNGG 3 cut(s) 269, 888, 1199
BseGI GGATG 5 cut(s) 46, 139, 163, 666, 1138
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 400, 476
BseNI ACTGG 1 cut(s) 1218
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 2 cut(s) 243, 963
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 6 cut(s) 5, 450, 518, 781, 1092, 1269
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 2 cut(s) 447, 757
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 814, 1149
BsmFI GGGAC 1 cut(s) 870
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 6 cut(s) 5, 450, 518, 781, 1092, 1269
Bsp119I TTCGAA 1 cut(s) 1076
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
BspACI CCGC 4 cut(s) 38, 234, 974, 1096
BspANI GGCC 6 cut(s) 5, 450, 518, 781, 1092, 1269
BspCNI CTCAG 3 cut(s) 4, 399, 475
BspMAI CTGCAG 1 cut(s) 1118
BspPI GGATC 2 cut(s) 2, 965
BspQI GCTCTTC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 1076
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 756
BsrI ACTGG 1 cut(s) 1218
BssAI RCCGGY 1 cut(s) 756
BssECI CCNNGG 3 cut(s) 269, 888, 1199
BssMI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
BssSI CACGAG 2 cut(s) 977, 1150
BssT1I CCWWGG 2 cut(s) 269, 1199
Bst2BI CACGAG 2 cut(s) 977, 1150
Bst2UI CCWGG 2 cut(s) 890, 1266
Bst4CI ACNGT 4 cut(s) 528, 588, 645, 1086
Bst6I CTCTTC 5 cut(s) 97, 493, 631, 762, 767
BstBI TTCGAA 1 cut(s) 1076
BstC8I GCNNGC 2 cut(s) 895, 1094
BstDEI CTNAG 3 cut(s) 12, 386, 462
BstF5I GGATG 5 cut(s) 46, 139, 163, 666, 1138
BstKTI GATC 8 cut(s) 10, 83, 151, 260, 292, 476, 973, 1213
BstMAI GTCTC 2 cut(s) 814, 1149
BstMBI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
BstMWI GCNNNNNNNGC 1 cut(s) 1008
BstNI CCWGG 2 cut(s) 890, 1266
BstNSI RCATGY 1 cut(s) 930
BstPAI GACNNNNGTC 1 cut(s) 1246
BstSCI CCNGG 2 cut(s) 888, 1264
BstSFI CTRYAG 2 cut(s) 201, 1114
BstV1I GCAGC 2 cut(s) 243, 963
BstV2I GAAGAC 1 cut(s) 1185
BsuRI GGCC 6 cut(s) 5, 450, 518, 781, 1092, 1269
BtgZI GCGATG 1 cut(s) 806
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 5 cut(s) 46, 139, 163, 666, 1138
BtsI GCAGTG 1 cut(s) 1123
BtsIMutI CAGTG 3 cut(s) 533, 650, 1123
Cac8I GCNNGC 2 cut(s) 895, 1094
CaiI CAGNNNCTG 1 cut(s) 1113
Cfr10I RCCGGY 1 cut(s) 756
Cfr13I GGNCC 2 cut(s) 740, 1090
Csp6I GTAC 4 cut(s) 54, 359, 930, 1221
CviAII CATG 6 cut(s) 108, 152, 311, 724, 788, 927
CviQI GTAC 4 cut(s) 54, 359, 930, 1221
DdeI CTNAG 3 cut(s) 12, 386, 462
DpnI GATC 8 cut(s) 9, 82, 150, 259, 291, 475, 972, 1212
DpnII GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
DraIII CACNNNGTG 1 cut(s) 511
EaeI YGGCCR 2 cut(s) 3, 448
Eam1104I CTCTTC 5 cut(s) 97, 493, 631, 762, 767
EarI CTCTTC 5 cut(s) 97, 493, 631, 762, 767
Eco130I CCWWGG 2 cut(s) 269, 1199
Eco147I AGGCCT 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 1103
EcoRII CCWGG 2 cut(s) 888, 1264
EcoT14I CCWWGG 2 cut(s) 269, 1199
ErhI CCWWGG 2 cut(s) 269, 1199
FaeI CATG 6 cut(s) 111, 155, 314, 727, 791, 930
FaqI GGGAC 1 cut(s) 870
FatI CATG 6 cut(s) 107, 151, 310, 723, 787, 926
FauNDI CATATG 2 cut(s) 604, 702
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 232, 952, 1097
FokI GGATG 5 cut(s) 53, 146, 170, 673, 1145
Fsp4HI GCNGC 3 cut(s) 232, 952, 1097
FspBI CTAG 2 cut(s) 183, 299
GluI GCNGC 3 cut(s) 232, 952, 1097
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 931
HaeIII GGCC 6 cut(s) 5, 450, 518, 781, 1092, 1269
HapII CCGG 2 cut(s) 447, 757
Hin1II CATG 6 cut(s) 111, 155, 314, 727, 791, 930
HinfI GANTC 5 cut(s) 384, 406, 443, 883, 1242
HpaII CCGG 2 cut(s) 447, 757
HphI GGTGA 4 cut(s) 188, 1046, 1148, 1188
Hpy166II GTNNAC 2 cut(s) 1139, 1223
Hpy188I TCNGA 6 cut(s) 99, 289, 329, 675, 970, 987
Hpy188III TCNNGA 4 cut(s) 11, 403, 764, 1233
Hpy8I GTNNAC 2 cut(s) 1139, 1223
HpyAV CCTTC 4 cut(s) 200, 914, 1083, 1123
HpyCH4III ACNGT 4 cut(s) 528, 588, 645, 1086
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 7 cut(s) 137, 239, 415, 493, 531, 1045, 1116
HpyF10VI GCNNNNNNNGC 1 cut(s) 1008
HpyF3I CTNAG 3 cut(s) 12, 386, 462
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 6 cut(s) 111, 155, 314, 727, 791, 930
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 4 cut(s) 648, 675, 902, 1022
Lsp1109I GCAGC 2 cut(s) 243, 963
LweI GCATC 3 cut(s) 113, 124, 687
MaeI CTAG 2 cut(s) 183, 299
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 456, 1118, 1162
MalI GATC 8 cut(s) 9, 82, 150, 259, 291, 475, 972, 1212
MboI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
MboII GAAGA 6 cut(s) 84, 510, 618, 779, 784, 1185
MhlI GDGCHC 1 cut(s) 507
MlyI GAGTC 5 cut(s) 378, 415, 452, 892, 1236
MmeI TCCRAC 2 cut(s) 260, 924
MseI TTAA 4 cut(s) 590, 735, 1272, 1282
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 2 cut(s) 447, 757
MspR9I CCNGG 2 cut(s) 890, 1266
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 2 cut(s) 890, 1266
MwoI GCNNNNNNNGC 1 cut(s) 1008
NdeI CATATG 2 cut(s) 604, 702
NdeII GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
NlaIII CATG 6 cut(s) 111, 155, 314, 727, 791, 930
NmuCI GTSAC 1 cut(s) 1118
NspI RCATGY 1 cut(s) 930
NspV TTCGAA 1 cut(s) 1076
PceI AGGCCT 1 cut(s) 518
PciI ACATGT 1 cut(s) 926
PciSI GCTCTTC 1 cut(s) 97
PctI GAATGC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 233, 953, 1098
PleI GAGTC 5 cut(s) 378, 414, 451, 891, 1236
PpsI GAGTC 5 cut(s) 378, 414, 451, 891, 1236
PscI ACATGT 1 cut(s) 926
PshAI GACNNNNGTC 1 cut(s) 1246
Psp6I CCWGG 2 cut(s) 888, 1264
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 2 cut(s) 888, 1264
PspPI GGNCC 2 cut(s) 740, 1090
PstI CTGCAG 1 cut(s) 1118
PstNI CAGNNNCTG 1 cut(s) 1113
RsaI GTAC 4 cut(s) 55, 360, 931, 1222
RsaNI GTAC 4 cut(s) 54, 359, 930, 1221
RseI CAYNNNNRTG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 4 cut(s) 590, 735, 1272, 1282
SatI GCNGC 3 cut(s) 232, 952, 1097
Sau3AI GATC 8 cut(s) 7, 80, 148, 257, 289, 473, 970, 1210
Sau96I GGNCC 2 cut(s) 740, 1090
ScaI AGTACT 2 cut(s) 55, 360
SchI GAGTC 5 cut(s) 378, 415, 452, 892, 1236
ScrFI CCNGG 2 cut(s) 890, 1266
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 3 cut(s) 113, 124, 687
SfcI CTRYAG 2 cut(s) 201, 1114
SfuI TTCGAA 1 cut(s) 1076
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 518
SsiI CCGC 4 cut(s) 38, 234, 974, 1096
SspMI CTAG 2 cut(s) 183, 299
StuI AGGCCT 1 cut(s) 518
StyD4I CCNGG 2 cut(s) 888, 1264
StyI CCWWGG 2 cut(s) 269, 1199
TaaI ACNGT 4 cut(s) 528, 588, 645, 1086
TaiI ACGT 1 cut(s) 402
TaqI TCGA 7 cut(s) 79, 256, 424, 438, 476, 1076, 1240
TatI WGTACW 4 cut(s) 53, 358, 929, 1220
TauI GCSGC 1 cut(s) 1099
Tru1I TTAA 4 cut(s) 590, 735, 1272, 1282
Tru9I TTAA 4 cut(s) 590, 735, 1272, 1282
TscAI CASTG 3 cut(s) 533, 650, 1123
TseFI GTSAC 1 cut(s) 1118
TseI GCWGC 2 cut(s) 231, 951
Tsp45I GTSAC 1 cut(s) 1118
TspDTI ATGAA 7 cut(s) 295, 299, 386, 896, 931, 1011, 1142
TspRI CASTG 3 cut(s) 533, 650, 1123
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 3 cut(s) 75, 1078, 1103
XceI RCATGY 1 cut(s) 930
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 2 cut(s) 183, 299
ZrmI AGTACT 2 cut(s) 55, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.