Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014927

Physical Location & Seq

Genomic Coordinates Forward (+)

9937764 .. 9940792

Gene Structure 3029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G116700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCTAAGTGGAGGACCGAAAGAAATATATAGACGAGATATGGCGCCTGAGAGAATTGAGATTTCAGATGAAGATGATCAAAGCAGTGATGCAAGTTACGAAATTCAAGCTAAAAATGACTGTTTACGCAGTTCTCAAAAGTGTTTGTTCTTTGACCTGAATGAGGAAGCAAGTATTGGAGATGATGATCAGGATGTTTCTTCATCCAACGAAGGCACCCAAGCCGTTGGGAGCAGAATATCTCCAGTAGGTAATTTAAGTTGTAATAACACAAGTGTTGAAGGAAAAGAACGGACAATTGCAGTAAGGCAATATGTTCGATCCAAGATGCCGAGGCTTCGTTGGACTCCTGATCTCCATCTAGCATTCATCCATGCTGTTGAGAGGCTCGGCGGACAAGAAAGAGCAACTCCAAAATTAGTTCTTCAATTGATGAACGTGAGAGGACTTAGCATTGCCCACGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTGGACGAGTCAGGCCAAGTTATCTCTCAATCAAGTAGAGGAATGCAAGTAAAAGATCACATTCTGGAAGCCTACCGCAAATTCAATCCTTATGGGCACTTAAGACATGTTGATGACAACGGAAGCCATTTTGCTTCTCCACCGGTATTGAAACAGCAGCCATATGATGATTTCAACGCAAACTCTTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

231

Amino Acids

25.92

Weight (kDa)

6.45

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42660
fragaria_vesca	FvH4_6g27550 FvH4_6g27550
malus_domestica	MD12G1106000.v1.1
prunus_persica	Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0129951
rosa_laevigata	RLG00000019115 RLG00000026381
rosa_multiflora	Rmu_sc0005625.1_g000002
rosa_rugosa	Rorug02G0290400
rosa_samantha	Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana	Rw2G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 215
AciI	CCGC	2 cut(s)	393, 574
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	102, 578
AcyI	GRCGYC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	604
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	7 cut(s)	107, 281, 428, 583, 649, 673, 687
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	2 cut(s)	110, 499
AluI	AGCT	2 cut(s)	110, 499
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	1 cut(s)	655
ApoI	RAATTY	2 cut(s)	102, 578
AsiGI	ACCGGT	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	597
BanI	GGYRCC	2 cut(s)	43, 215
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	1 cut(s)	366
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	4 cut(s)	299, 333, 467, 501
BclI	TGATCA	2 cut(s)	76, 187
BfaI	CTAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	47
BfrI	CTTAAG	1 cut(s)	598
BisI	GCNGC	1 cut(s)	656
BlsI	GCNGC	1 cut(s)	657
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	45, 217
BmsI	GCATC	2 cut(s)	79, 318
BpmI	CTGGAG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	463
BsaBI	GATNNNNATC	2 cut(s)	186, 357
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	332
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	2 cut(s)	186, 357
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	3 cut(s)	199, 203, 369
BseJI	GATNNNNATC	2 cut(s)	186, 357
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	1 cut(s)	513
BshNI	GGYRCC	2 cut(s)	43, 215
BshTI	ACCGGT	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmI	GAATGC	2 cut(s)	365, 546
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	5 cut(s)	76, 187, 320, 352, 553
BspACI	CCGC	2 cut(s)	393, 574
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	45, 217
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	2 cut(s)	43, 215
BspTI	CTTAAG	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	5 cut(s)	76, 187, 320, 352, 553
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	688
BstACI	GRCGYC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	598
BstBAI	YACGTR	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	5, 48, 449
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	199, 203, 369
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	5 cut(s)	79, 190, 323, 355, 556
BstMBI	GATC	5 cut(s)	76, 187, 320, 352, 553
BstNSI	RCATGY	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	3 cut(s)	199, 203, 369
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	640
CspCI	CAANNNNNGTGG	2 cut(s)	627, 662
CviAII	CATG	2 cut(s)	374, 605
CviJI	RGCY	9 cut(s)	110, 224, 337, 388, 499, 513, 569, 624, 658
CviKI_1	RGCY	9 cut(s)	110, 224, 337, 388, 499, 513, 569, 624, 658
DdeI	CTNAG	3 cut(s)	5, 48, 449
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	5 cut(s)	78, 189, 322, 354, 555
DpnII	GATC	5 cut(s)	76, 187, 320, 352, 553
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
EciI	GGCGGA	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
FaeI	CATG	2 cut(s)	377, 608
FaiI	YATR	9 cut(s)	28, 30, 41, 315, 375, 591, 606, 661, 663
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FatI	CATG	2 cut(s)	373, 604
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	2 cut(s)	76, 187
Fnu4HI	GCNGC	1 cut(s)	656
FokI	GGATG	3 cut(s)	190, 206, 356
Fsp4HI	GCNGC	1 cut(s)	656
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	641
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	377, 608
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	346, 469, 506
HpaII	CCGG	1 cut(s)	641
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	191, 350, 563
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	206, 275
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	438, 462
HpyCH4V	TGCA	4 cut(s)	92, 302, 478, 544
HpyF3I	CTNAG	3 cut(s)	5, 48, 449
HpySE526I	ACGT	2 cut(s)	438, 462
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	377, 608
HspAI	GCGC	1 cut(s)	44
KasI	GGCGCC	1 cut(s)	43
Ksp22I	TGATCA	2 cut(s)	76, 187
Kzo9I	GATC	5 cut(s)	76, 187, 320, 352, 553
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	60, 170, 176, 258, 363, 485, 495, 548, 654
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	2 cut(s)	79, 318
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	438, 462
MaeIII	GTNAC	2 cut(s)	95, 470
MalI	GATC	5 cut(s)	78, 189, 322, 354, 555
MboI	GATC	5 cut(s)	76, 187, 320, 352, 553
MboII	GAAGA	4 cut(s)	83, 192, 416, 675
MfeI	CAATTG	2 cut(s)	297, 428
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	7 cut(s)	54, 102, 253, 297, 416, 428, 578
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	3 cut(s)	340, 478, 515
MmeI	TCCRAC	2 cut(s)	231, 323
MnlI	CCTC	6 cut(s)	5, 157, 327, 378, 437, 530
MseI	TTAA	2 cut(s)	257, 599
MslI	CAYNNNNRTG	1 cut(s)	609
MspCI	CTTAAG	1 cut(s)	598
MspI	CCGG	1 cut(s)	641
MunI	CAATTG	2 cut(s)	297, 428
Mva1269I	GAATGC	2 cut(s)	365, 546
NarI	GGCGCC	1 cut(s)	44
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	5 cut(s)	76, 187, 320, 352, 553
NlaIII	CATG	2 cut(s)	377, 608
NlaIV	GGNNCC	2 cut(s)	45, 217
NmeAIII	GCCGAG	2 cut(s)	357, 369
NmuCI	GTSAC	1 cut(s)	470
NspI	RCATGY	1 cut(s)	608
PciI	ACATGT	1 cut(s)	604
PctI	GAATGC	2 cut(s)	365, 546
PinAI	ACCGGT	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	657
PleI	GAGTC	3 cut(s)	340, 477, 514
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	3 cut(s)	340, 477, 514
Ppu21I	YACGTR	1 cut(s)	463
PscI	ACATGT	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	45, 217
PspPI	GGNCC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	257, 599
SatI	GCNGC	1 cut(s)	656
Sau3AI	GATC	5 cut(s)	76, 187, 320, 352, 553
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	3 cut(s)	340, 478, 515
SduI	GDGCHC	1 cut(s)	597
SetI	ASST	7 cut(s)	112, 159, 253, 441, 465, 501, 692
SfaNI	GCATC	2 cut(s)	79, 318
SfoI	GGCGCC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	7 cut(s)	54, 102, 253, 297, 416, 428, 578
SsiI	CCGC	2 cut(s)	393, 574
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	441, 465
TaqI	TCGA	2 cut(s)	319, 487
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	7 cut(s)	54, 102, 253, 297, 416, 428, 578
Tru1I	TTAA	2 cut(s)	257, 599
Tru9I	TTAA	2 cut(s)	257, 599
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	4 cut(s)	84, 192, 358, 449
TspGWI	ACGGA	2 cut(s)	307, 633
TspRI	CASTG	1 cut(s)	91
Vha464I	CTTAAG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	102, 578
XceI	RCATGY	1 cut(s)	608
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.