Rorug02G0290400
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014927
Physical Location & Seq
Forward (+)
31823458 .. 31824030
573 bp
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UTR
Exon/CDS
Intron
Rorug02G0290400.1

Sequence Viewer

Length: 573 bp
ATGCAAAGAAAGGGGCTGTTTTTGAGAGAGGCACTTCATTGGCTAGCTTATGAGCGCGACAACACTGCTCCTTTTAAGTATTCCGGACTACCAATAGTACTCTTTGCCTTTGATTTGGCGGAGGAGGAGTTCCGGAAAATGCAGGTGCCTAGTAGTAGAATTCTGAACTTGACTTATGAAAGCCGTTTGGGAGTTTCTTGTGAAGGATGCCTGTATATAATGCATTATGGTCGGCTGTTTGAGCCTAAATGCATAGATTATGTTGTTGATTTTTGGGTCATGAGAGAATACGGCAACAGTGATTCCTGGACTAGATCCTTCAGCCTAAGGTTTTCCGATGAGCCCAATAAGCGGATTTATATGCTTGAACCGATCTTGCTTAAGGAAACTAGTGCATTTGTGATGAACAGACCAAAGAAGTTTGATCAAGACAAAGAAGAGATGCCTGATCATCACATGTATATGATTCATGATCAAAATAAACAAGAGAACGCCAGCATGTATATTCTTCACAGTAATCCACCAGACATGATTGTATATGAAGAGAGTCTCAGTGAGTATCATAAGGCTTGA

Protein Analysis

190

Amino Acids

22.73

Weight (kDa)

5.66

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 4 - 184 1.7e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 145
AccII CGCG 1 cut(s) 57
AccIII TCCGGA 2 cut(s) 83, 132
AciI CCGC 2 cut(s) 119, 352
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 304
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 351
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 1 cut(s) 368
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 1 cut(s) 305
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 1 cut(s) 309
Aor13HI TCCGGA 2 cut(s) 83, 132
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 1 cut(s) 57
AsuNHI GCTAGC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 326
BanI GGYRCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 345
BceAI ACGGC 2 cut(s) 168, 307
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 212, 246
BciT130I CCWGG 1 cut(s) 307
BclI TGATCA 3 cut(s) 424, 448, 472
BcoDI GTCTC 1 cut(s) 554
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 4 cut(s) 44, 150, 312, 390
BfrI CTTAAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 197, 432
BmtI GCTAGC 1 cut(s) 47
BsaWI WCCGGW 2 cut(s) 83, 132
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse21I CCTNAGG 1 cut(s) 326
BseAI TCCGGA 2 cut(s) 83, 132
BseBI CCWGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 137, 140
Bsh1236I CGCG 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 84, 133
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 345
Bsp13I TCCGGA 2 cut(s) 83, 132
Bsp143I GATC 5 cut(s) 314, 372, 424, 448, 472
BspACI CCGC 2 cut(s) 119, 352
BspCNI CTCAG 1 cut(s) 564
BspEI TCCGGA 2 cut(s) 83, 132
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 2 cut(s) 279, 469
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 133
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 380
BssMI GATC 5 cut(s) 314, 372, 424, 448, 472
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 299, 515
Bst6I CTCTTC 2 cut(s) 432, 537
BstAFI CTTAAG 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 45, 496
BstDEI CTNAG 2 cut(s) 326, 551
BstF5I GGATG 1 cut(s) 212
BstFNI CGCG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 5 cut(s) 317, 375, 427, 451, 475
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 5 cut(s) 314, 372, 424, 448, 472
BstMWI GCNNNNNNNGC 2 cut(s) 241, 349
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 460, 502
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
Bsu36I CCTNAGG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 63, 304, 559
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 45, 496
CciI TCATGA 2 cut(s) 279, 469
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 98
CviAII CATG 5 cut(s) 280, 457, 470, 499, 529
CviJI RGCY 9 cut(s) 16, 43, 47, 183, 235, 244, 324, 343, 569
CviKI_1 RGCY 9 cut(s) 16, 43, 47, 183, 235, 244, 324, 343, 569
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 2 cut(s) 326, 551
DpnI GATC 5 cut(s) 316, 374, 426, 450, 474
DpnII GATC 5 cut(s) 314, 372, 424, 448, 472
Eam1104I CTCTTC 2 cut(s) 432, 537
EarI CTCTTC 2 cut(s) 432, 537
EciI GGCGGA 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 305
EcoT22I ATGCAT 2 cut(s) 225, 254
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 5 cut(s) 283, 460, 473, 502, 532
FatI CATG 5 cut(s) 279, 456, 469, 498, 528
FbaI TGATCA 3 cut(s) 424, 448, 472
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 345
FspBI CTAG 4 cut(s) 44, 150, 312, 390
GlaI GCGC 1 cut(s) 56
HapII CCGG 2 cut(s) 84, 133
HhaI GCGC 1 cut(s) 57
Hin1II CATG 5 cut(s) 283, 460, 473, 502, 532
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 3 cut(s) 302, 466, 547
HpaII CCGG 2 cut(s) 84, 133
Hpy188I TCNGA 2 cut(s) 165, 337
Hpy188III TCNNGA 5 cut(s) 84, 133, 280, 428, 470
HpyAV CCTTC 2 cut(s) 197, 328
HpyCH4III ACNGT 2 cut(s) 299, 515
HpyCH4V TGCA 5 cut(s) 4, 142, 223, 252, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 349
HpyF3I CTNAG 2 cut(s) 326, 551
Hsp92II CATG 5 cut(s) 283, 460, 473, 502, 532
HspAI GCGC 1 cut(s) 55
Kpn2I TCCGGA 2 cut(s) 83, 132
Ksp22I TGATCA 3 cut(s) 424, 448, 472
Kzo9I GATC 5 cut(s) 314, 372, 424, 448, 472
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 9 cut(s) 97, 128, 146, 224, 292, 319, 459, 508, 537
LweI GCATC 2 cut(s) 197, 432
MaeI CTAG 4 cut(s) 44, 150, 312, 390
MalI GATC 5 cut(s) 316, 374, 426, 450, 474
MboI GATC 5 cut(s) 314, 372, 424, 448, 472
MboII GAAGA 3 cut(s) 449, 500, 554
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 3 cut(s) 22, 115, 118
Mph1103I ATGCAT 2 cut(s) 225, 254
MroI TCCGGA 2 cut(s) 83, 132
MseI TTAA 2 cut(s) 75, 381
MslI CAYNNNNRTG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 2 cut(s) 84, 133
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 241, 349
NdeII GATC 5 cut(s) 314, 372, 424, 448, 472
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 5 cut(s) 283, 460, 473, 502, 532
NlaIV GGNNCC 1 cut(s) 147
NsiI ATGCAT 2 cut(s) 225, 254
NspI RCATGY 2 cut(s) 460, 502
PagI TCATGA 2 cut(s) 279, 469
PaqCI CACCTGC 1 cut(s) 133
PciI ACATGT 1 cut(s) 456
PfeI GAWTC 2 cut(s) 302, 466
PfoI TCCNGGA 1 cut(s) 305
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PscI ACATGT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 2 cut(s) 75, 381
Sau3AI GATC 5 cut(s) 314, 372, 424, 448, 472
ScaI AGTACT 1 cut(s) 99
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 345
SetI ASST 3 cut(s) 49, 147, 332
SfaNI GCATC 2 cut(s) 197, 432
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 1 cut(s) 159
SsiI CCGC 2 cut(s) 119, 352
SspMI CTAG 4 cut(s) 44, 150, 312, 390
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 299, 515
TasI AATT 1 cut(s) 159
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 2 cut(s) 302, 466
Tru1I TTAA 2 cut(s) 75, 381
Tru9I TTAA 2 cut(s) 75, 381
TscAI CASTG 3 cut(s) 70, 304, 559
TspDTI ATGAA 5 cut(s) 26, 192, 419, 458, 555
TspRI CASTG 3 cut(s) 70, 304, 559
Vha464I CTTAAG 1 cut(s) 380
XapI RAATTY 1 cut(s) 159
XceI RCATGY 2 cut(s) 460, 502
XspI CTAG 4 cut(s) 44, 150, 312, 390
ZrmI AGTACT 1 cut(s) 99
Zsp2I ATGCAT 2 cut(s) 225, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.