Rw2G027730
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014927
Physical Location & Seq
Forward (+)
43827531 .. 43831147
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027730.1

Sequence Viewer

Length: 1269 bp
ATGGCTGATCCTGAGATGATTGAGATTTCTGTTGAAGCGGATGATGACCAAAGTACTACTGATGGAAGTAAAGATTTTCGATCTAAAAGCTCTTCCCCGAAAGCATCATGTTTGTTCTTTGACTTGAATGAGGATGCAACTAGTGATGATCATGGGGATGTTTCAAAAAATATAGGTGAAGCTAGGGAAAGCAAAACATCTACAGAAGGGAAAGAACAGACGGCAACCAGCAGCGGTGCAGTCAGGCAATATGTTCGATCAAAAATGCCAAGGCTTCGTTGGACTTCTGATCTCCATCTAGCATTCATTCATGCCGTTGAGAGGCTCGGAGGACAAGAAAGAGCAACTCCAAAATTAGTACTTCAGTTGATGAATGTGAGAGGACTCAGCATTGCTCACGTCAAGAGTCATTTGCAGATGTATCGAAGCAAGAAGCTCGATGAGTCCGGCCAAGTGTTACCTCAGTTCAATAGATCGAGGAGAATGTTGTTGCAAGGAAGAGAGCACATTGTGGAAGCCTATCAACAGTACAATCCTTTCAGGCACTTCAGACTTGATGACAGAGGAAGCCATTTTCCTTCTCCACCATTAAAACATCAGCCATATGATAATTTGAATGCCAACTCTTCAAGCAATTCTGGGATGGAGAACCATCGGAGCATCAATACAATTACAAGCTCACATATGTTTAGTGTAAAGGAAGTCATGACAAGAGTTAATGGACCTATTAGATCCAGCCGGTTTCTTGAGGAGAAGAGATGGCCTCCTCGTGAGATGATAGGAAATCACATTAGAGGCAGGAGACATTCTCTAAACATTTCTTGGGGTAATACCATCAATGTCGCACAACCTAATTCAGTAGGGAGTCCCCAGGCAAGCTCCAACCGACATCTACCCAATCATACTACATGTTCTCCAAAGTTCATCTCCAGCAGCTACGACGAACCCGTATCTGATCCGCACGAGGTTCGGAAACCTGATGATAGCATAAATGGCGAAACATTTGGAGCAGAAGTTGGTGATAATATGCACACTTTGAAACAAAAGAAATGGTTACCTTTGAATTTACAGTTGGGCCTTCGGCAAGAATTCAGTATCTGCATTGACGAGATGAAGGATGGTGAACAAGAAAGCACGAGAGACATTGAAACAACGCTTTCTCTATCTTTATCCTCGTCTTCACCAAGGCAACAAGATCAATCCAGTACACCCACATCAAGAGTTCGACACTTGTCATTTCCTCTCTCTCCTGGCCTTAAACCTACTTAA

Protein Analysis

422

Amino Acids

47.57

Weight (kDa)

8.34

Isoelectric Point (pI)

65.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 91 - 142 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 38, 234, 959
AclWI GGATC 3 cut(s) 2, 726, 950
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 2 cut(s) 1063, 1088
AcuI CTGAAG 2 cut(s) 347, 532
AdeI CACNNNGTG 1 cut(s) 511
AfaI GTAC 4 cut(s) 55, 360, 530, 1207
AfiI CCNNNNNNNGG 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 908
AgsI TTSAA 9 cut(s) 35, 127, 165, 469, 616, 630, 1039, 1063, 1148
AhlI ACTAGT 1 cut(s) 140
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 2 cut(s) 870, 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
AluBI AGCT 6 cut(s) 90, 182, 436, 678, 879, 936
AluI AGCT 6 cut(s) 90, 182, 436, 678, 879, 936
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 2 cut(s) 796, 1134
AlwI GGATC 3 cut(s) 2, 726, 950
AlwNI CAGNNNCTG 1 cut(s) 1098
AoxI GGCC 4 cut(s) 448, 761, 1075, 1252
ApeKI GCWGC 2 cut(s) 231, 933
ApoI RAATTY 2 cut(s) 1063, 1088
AspS9I GGNCC 2 cut(s) 722, 1075
AsuHPI GGTGA 4 cut(s) 188, 1031, 1133, 1173
AvaII GGWCC 1 cut(s) 722
BauI CACGAG 3 cut(s) 768, 962, 1135
BbsI GAAGAC 1 cut(s) 1170
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 243, 945
BccI CCATC 7 cut(s) 56, 303, 637, 660, 753, 842, 1112
BceAI ACGGC 2 cut(s) 237, 299
BcgI CGANNNNNNTGC 8 cut(s) 236, 270, 404, 418, 438, 452, 950, 984
BciT130I CCWGG 2 cut(s) 872, 1251
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 796, 1134
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 3 cut(s) 141, 183, 299
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 232, 934
BlsI GCNGC 2 cut(s) 233, 935
BmcAI AGTACT 2 cut(s) 55, 360
Bme1390I CCNGG 2 cut(s) 872, 1251
Bme18I GGWCC 1 cut(s) 722
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 722, 1075
BmrFI CCNGG 2 cut(s) 872, 1251
BmsI GCATC 3 cut(s) 113, 124, 669
BoxI GACNNNNGTC 1 cut(s) 1231
BpiI GAAGAC 1 cut(s) 1170
BplI GAGNNNNNCTC 4 cut(s) 748, 780, 793, 825
BpmI CTGGAG 1 cut(s) 913
BpuEI CTTGAG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 269, 870, 1184
BsaXI ACNNNNNCTCC 4 cut(s) 898, 928, 999, 1029
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 738
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 2 cut(s) 872, 1251
BseDI CCNNGG 3 cut(s) 269, 870, 1184
BseGI GGATG 5 cut(s) 46, 139, 163, 648, 1123
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 400, 476
BseNI ACTGG 1 cut(s) 1203
BseRI GAGGAG 3 cut(s) 493, 756, 764
BseXI GCAGC 2 cut(s) 243, 945
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 4 cut(s) 450, 763, 1077, 1254
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 2 cut(s) 447, 739
BslFI GGGAC 1 cut(s) 852
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 796, 1134
BsmFI GGGAC 1 cut(s) 852
BsmI GAATGC 2 cut(s) 302, 622
BsnI GGCC 4 cut(s) 450, 763, 1077, 1254
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
BspACI CCGC 3 cut(s) 38, 234, 959
BspANI GGCC 4 cut(s) 450, 763, 1077, 1254
BspCNI CTCAG 3 cut(s) 4, 399, 475
BspHI TCATGA 1 cut(s) 705
BspPI GGATC 3 cut(s) 2, 726, 950
BspQI GCTCTTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 738
BsrI ACTGG 1 cut(s) 1203
BssAI RCCGGY 1 cut(s) 738
BssECI CCNNGG 3 cut(s) 269, 870, 1184
BssMI GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
BssSI CACGAG 3 cut(s) 768, 962, 1135
BssT1I CCWWGG 2 cut(s) 269, 1184
Bst2BI CACGAG 3 cut(s) 768, 962, 1135
Bst2UI CCWGG 2 cut(s) 872, 1251
Bst4CI ACNGT 2 cut(s) 528, 1071
Bst6I CTCTTC 4 cut(s) 97, 493, 631, 749
BstC8I GCNNGC 1 cut(s) 877
BstDEI CTNAG 3 cut(s) 12, 386, 462
BstEII GGTNACC 1 cut(s) 1053
BstF5I GGATG 5 cut(s) 46, 139, 163, 648, 1123
BstKTI GATC 9 cut(s) 10, 83, 151, 260, 292, 476, 734, 958, 1198
BstMAI GTCTC 2 cut(s) 796, 1134
BstMBI GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
BstMWI GCNNNNNNNGC 1 cut(s) 993
BstNI CCWGG 2 cut(s) 872, 1251
BstNSI RCATGY 1 cut(s) 912
BstPAI GACNNNNGTC 1 cut(s) 1231
BstPI GGTNACC 1 cut(s) 1053
BstSCI CCNGG 2 cut(s) 870, 1249
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 243, 945
BstV2I GAAGAC 1 cut(s) 1170
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
BsuRI GGCC 4 cut(s) 450, 763, 1077, 1254
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 5 cut(s) 46, 139, 163, 648, 1123
Cac8I GCNNGC 1 cut(s) 877
CaiI CAGNNNCTG 1 cut(s) 1098
CciI TCATGA 1 cut(s) 705
Cfr10I RCCGGY 1 cut(s) 738
Cfr13I GGNCC 2 cut(s) 722, 1075
Csp6I GTAC 4 cut(s) 54, 359, 529, 1206
CviAII CATG 5 cut(s) 108, 152, 311, 706, 909
CviQI GTAC 4 cut(s) 54, 359, 529, 1206
DdeI CTNAG 3 cut(s) 12, 386, 462
DpnI GATC 9 cut(s) 9, 82, 150, 259, 291, 475, 733, 957, 1197
DpnII GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
DraIII CACNNNGTG 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 4 cut(s) 97, 493, 631, 749
EarI CTCTTC 4 cut(s) 97, 493, 631, 749
Eco130I CCWWGG 2 cut(s) 269, 1184
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 2 cut(s) 347, 532
Eco91I GGTNACC 1 cut(s) 1053
EcoO65I GGTNACC 1 cut(s) 1053
EcoRI GAATTC 1 cut(s) 1088
EcoRII CCWGG 2 cut(s) 870, 1249
EcoT14I CCWWGG 2 cut(s) 269, 1184
ErhI CCWWGG 2 cut(s) 269, 1184
FaeI CATG 5 cut(s) 111, 155, 314, 709, 912
FaqI GGGAC 1 cut(s) 852
FatI CATG 5 cut(s) 107, 151, 310, 705, 908
FauNDI CATATG 2 cut(s) 604, 684
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 232, 934
FokI GGATG 5 cut(s) 53, 146, 170, 655, 1130
Fsp4HI GCNGC 2 cut(s) 232, 934
FspBI CTAG 3 cut(s) 141, 183, 299
GluI GCNGC 2 cut(s) 232, 934
GsuI CTGGAG 1 cut(s) 913
HaeIII GGCC 4 cut(s) 450, 763, 1077, 1254
HapII CCGG 2 cut(s) 447, 739
Hin1II CATG 5 cut(s) 111, 155, 314, 709, 912
HinfI GANTC 4 cut(s) 384, 406, 443, 865
HpaII CCGG 2 cut(s) 447, 739
HphI GGTGA 4 cut(s) 188, 1031, 1133, 1173
Hpy166II GTNNAC 2 cut(s) 1124, 1208
Hpy188I TCNGA 6 cut(s) 289, 329, 551, 657, 955, 972
Hpy188III TCNNGA 6 cut(s) 11, 403, 706, 746, 770, 1218
Hpy8I GTNNAC 2 cut(s) 1124, 1208
Hpy99I CGWCG 1 cut(s) 944
HpyAV CCTTC 4 cut(s) 200, 588, 1088, 1108
HpyCH4III ACNGT 2 cut(s) 528, 1071
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 6 cut(s) 137, 239, 415, 493, 1030, 1101
HpyF10VI GCNNNNNNNGC 1 cut(s) 993
HpyF3I CTNAG 3 cut(s) 12, 386, 462
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 5 cut(s) 111, 155, 314, 709, 912
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 3 cut(s) 657, 884, 1007
Lsp1109I GCAGC 2 cut(s) 243, 945
LweI GCATC 3 cut(s) 113, 124, 669
MaeI CTAG 3 cut(s) 141, 183, 299
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 456, 1053
MalI GATC 9 cut(s) 9, 82, 150, 259, 291, 475, 733, 957, 1197
MboI GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
MboII GAAGA 5 cut(s) 84, 510, 618, 766, 1170
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 7 cut(s) 353, 610, 634, 669, 853, 1063, 1088
MlyI GAGTC 4 cut(s) 378, 415, 452, 874
MmeI TCCRAC 2 cut(s) 260, 906
MseI TTAA 4 cut(s) 590, 717, 1257, 1267
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 2 cut(s) 447, 739
MspR9I CCNGG 2 cut(s) 872, 1251
Mva1269I GAATGC 2 cut(s) 302, 622
MvaI CCWGG 2 cut(s) 872, 1251
MwoI GCNNNNNNNGC 1 cut(s) 993
NdeI CATATG 2 cut(s) 604, 684
NdeII GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
NlaIII CATG 5 cut(s) 111, 155, 314, 709, 912
NspI RCATGY 1 cut(s) 912
PagI TCATGA 1 cut(s) 705
PciI ACATGT 1 cut(s) 908
PciSI GCTCTTC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 945
PctI GAATGC 2 cut(s) 302, 622
PkrI GCNGC 2 cut(s) 233, 935
PleI GAGTC 4 cut(s) 378, 414, 451, 873
PpsI GAGTC 4 cut(s) 378, 414, 451, 873
PscI ACATGT 1 cut(s) 908
PshAI GACNNNNGTC 1 cut(s) 1231
Psp6I CCWGG 2 cut(s) 870, 1249
PspEI GGTNACC 1 cut(s) 1053
PspGI CCWGG 2 cut(s) 870, 1249
PspPI GGNCC 2 cut(s) 722, 1075
PstNI CAGNNNCTG 1 cut(s) 1098
PsuI RGATCY 1 cut(s) 731
RsaI GTAC 4 cut(s) 55, 360, 530, 1207
RsaNI GTAC 4 cut(s) 54, 359, 529, 1206
RseI CAYNNNNRTG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 4 cut(s) 590, 717, 1257, 1267
SatI GCNGC 2 cut(s) 232, 934
Sau3AI GATC 9 cut(s) 7, 80, 148, 257, 289, 473, 731, 955, 1195
Sau96I GGNCC 2 cut(s) 722, 1075
ScaI AGTACT 2 cut(s) 55, 360
SchI GAGTC 4 cut(s) 378, 415, 452, 874
ScrFI CCNGG 2 cut(s) 872, 1251
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 3 cut(s) 113, 124, 669
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 7 cut(s) 353, 610, 634, 669, 853, 1063, 1088
SsiI CCGC 3 cut(s) 38, 234, 959
SspMI CTAG 3 cut(s) 141, 183, 299
StyD4I CCNGG 2 cut(s) 870, 1249
StyI CCWWGG 2 cut(s) 269, 1184
TaaI ACNGT 2 cut(s) 528, 1071
TaiI ACGT 1 cut(s) 402
TaqI TCGA 6 cut(s) 79, 256, 424, 438, 476, 1225
TasI AATT 7 cut(s) 353, 610, 634, 669, 853, 1063, 1088
TatI WGTACW 4 cut(s) 53, 358, 528, 1205
Tru1I TTAA 4 cut(s) 590, 717, 1257, 1267
Tru9I TTAA 4 cut(s) 590, 717, 1257, 1267
TseI GCWGC 2 cut(s) 231, 933
TspDTI ATGAA 5 cut(s) 295, 299, 386, 913, 1127
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 2 cut(s) 1063, 1088
XceI RCATGY 1 cut(s) 912
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 3 cut(s) 141, 183, 299
ZrmI AGTACT 2 cut(s) 55, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.