MD12G1106000.v1.1
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0014927
Physical Location & Seq
Reverse (-)
16780021 .. 16780313
293 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1106000.v1.1.491

Sequence Viewer

Length: 234 bp
ATGACTTCAAGTAGTTGCAGTGCAAGGAACGGCGCCCTTAGGCAGTATGTGAGATCCAAGGTTTCTCGTTTGAGATGGACTCTTGAACTTCATCGCTGCTTTCTTCAGGCCATCGAAAGGCTCGAAGGCCATACTAGTGAGCAATTACGAAACCCACCATTGGCAGCAATGGAGCTTTCTTCAGGTGGGAATATCATCTGGAGCCAACACATTGGCAGCAATGGAGCTTGCTAA

Protein Analysis

78

Amino Acids

8.57

Weight (kDa)

9.6

Isoelectric Point (pI)

76.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AclWI GGATC 1 cut(s) 48
AcuI CTGAAG 2 cut(s) 89, 165
AcyI GRCGYC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 117, 160
AgsI TTSAA 2 cut(s) 9, 86
AhlI ACTAGT 1 cut(s) 134
AluBI AGCT 2 cut(s) 175, 227
AluI AGCT 2 cut(s) 175, 227
AlwI GGATC 1 cut(s) 48
AoxI GGCC 2 cut(s) 108, 127
ApeKI GCWGC 3 cut(s) 96, 164, 216
AspLEI GCGC 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 38
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 83, 176, 228
BccI CCATC 2 cut(s) 69, 119
BceAI ACGGC 1 cut(s) 46
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 3 cut(s) 97, 165, 217
BlsI GCNGC 3 cut(s) 98, 166, 218
BmiI GGNNCC 2 cut(s) 34, 203
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 160
Bse21I CCTNAGG 1 cut(s) 38
Bse3DI GCAATG 2 cut(s) 174, 226
BseDI CCNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 117, 160
BseMI GCAATG 2 cut(s) 174, 226
BseXI GCAGC 3 cut(s) 83, 176, 228
BshFI GGCC 2 cut(s) 110, 129
BshNI GGYRCC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 117, 160
BsnI GGCC 2 cut(s) 110, 129
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 2 cut(s) 110, 129
BspLI GGNNCC 2 cut(s) 34, 203
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 174, 226
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 83, 176, 228
BstX2I RGATCY 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 2 cut(s) 110, 129
BtgZI GCGATG 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 1 cut(s) 35
CviJI RGCY 6 cut(s) 110, 121, 129, 175, 204, 227
CviKI_1 RGCY 6 cut(s) 110, 121, 129, 175, 204, 227
DdeI CTNAG 1 cut(s) 38
DinI GGCGCC 1 cut(s) 34
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 89, 165
Eco81I CCTNAGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 57
FaiI YATR 2 cut(s) 48, 132
Fnu4HI GCNGC 3 cut(s) 97, 165, 217
Fsp4HI GCNGC 3 cut(s) 97, 165, 217
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 34
GluI GCNGC 3 cut(s) 97, 165, 217
GsuI CTGGAG 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 110, 129
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 33
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 83, 199
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 18, 23
HpyF3I CTNAG 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 33
HspAI GCGC 1 cut(s) 33
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 53
LmnI GCTCC 3 cut(s) 172, 201, 224
LpnPI CCDG 3 cut(s) 92, 168, 184
Lsp1109I GCAGC 3 cut(s) 83, 176, 228
MaeI CTAG 1 cut(s) 135
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 2 cut(s) 95, 171
MflI RGATCY 1 cut(s) 53
MluCI AATT 1 cut(s) 143
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 1 cut(s) 73
MslI CAYNNNNRTG 1 cut(s) 135
NarI GGCGCC 1 cut(s) 33
NdeII GATC 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 34, 203
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PkrI GCNGC 3 cut(s) 98, 166, 218
PleI GAGTC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 34, 203
PsuI RGATCY 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 3 cut(s) 97, 165, 217
Sau3AI GATC 1 cut(s) 53
SchI GAGTC 1 cut(s) 73
SetI ASST 4 cut(s) 63, 177, 187, 229
SfoI GGCGCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 1 cut(s) 143
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 57
TaqI TCGA 2 cut(s) 114, 123
TasI AATT 1 cut(s) 143
TscAI CASTG 1 cut(s) 25
TseI GCWGC 3 cut(s) 96, 164, 216
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 25
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.