FvH4_6g27550
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014927
Physical Location & Seq
Reverse (-)
21183720 .. 21188130
4411 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27550.t2

Sequence Viewer

Length: 1296 bp
ATGGGAGATCCTGAGATGATCGAGATATCCGATGAAGCAGATGATAACCAAAGTACTAGTGATGGAAGTAAAGACATTCGATCTAAAAGCTCTTCTCCGAAGGCGTCATGCTTGTTCTTAGACTTGAATGCAGAAGCAAGTAGTGATGATCATGAGAATGCTTCAAACAATGTTAAAGCTGGGGGAAGCAGAATATCTACAGAAGGGAAAGAACAGACCGCAACCAGCAATAGTGGTGCAGTCAGGCAATATGTTCGATCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTCCATCTAGCATTCATTCATGCCGTTGAGAGGCTAGGAGGACAAGAACGAGCAACTCCAAAATTAGTTCTACAATTGATGAATGTGAGAGGACTAAGCATTGCTCACGTCAAGAGTCATCTGCAGATGTATCGAAGTAAGAAGCTCGATGAGTCCGGCCAAGTGTTACCTCAGTTCCATAGATCAAGAGGAATCTTGTTGCAAGGAAGAGACCAGGTTGTGGAAGCCTATCAACAGTTCAATCCTTACAGCAGGCACTTCAGATTTCATGGCAGAGGAAGCCAATTTCCTTCTCCACCATCAAAACATCACCCCTATGATAATTTGAATGCCAACTGTTCAAGGTTGATTTCACAATGGAGCAATCCTGGAATGGAGAACAATCGGAGTATCAATACAATTACAAGCTCACACATCATTAGTGTAAATGAAGCCATGACAAGAGTTCATGCACCTATTAGACCCAGCCGGTTTCTTGAAGATAAGAGATGGCCTCCCCGTGAGATGATTGGAAACCACAACAAAGGCATGAGACATTCTCTAAACATTTCTTGGGGTAATACCATCCATGTCGCACAACCTAAATCAGTTGGGAGCCCCCAGGCAAGCTCCAACCAACATCTACCGACCAATACTACTACATGTAGTCCAAAGTTCATCTCCAGCATCTATGAACCTTTATCTGATCCTCTTGAGGTTCGGAAACCTGATGAAAGCATAAATGGAGAAACATATCGAGCAGAAGTTGGTGATAATATGCAAGCAACGAAACAAAAGAAATGGCTACCTTTGAATTTACAGTTGAGTTTGCGGCAAGATTTCAGTATTTGCAGTGACGAAATGAAGGATGGAGAGCAAGAAAGCATGAAAGACATTGAAACAACGCTTTCTCTTTCTTTATCATCGTCTTCACCAAGAAGGCAACAAGATCAATCCAGTACACCCACATCAAGAGTTCGACTCTTGTCATCATTTCCTCTCTCTGGAAGCCTTAAACCTACTTAA

Protein Analysis

432

Amino Acids

48.24

Weight (kDa)

9.15

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 91 - 142 3.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 511
AciI CCGC 2 cut(s) 219, 1102
AclWI GGATC 3 cut(s) 2, 252, 971
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 1 cut(s) 1084
AcuI CTGAAG 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 2 cut(s) 55, 1231
AfiI CCNNNNNNNGG 3 cut(s) 321, 511, 1274
AflIII ACRYGT 1 cut(s) 932
AgsI TTSAA 8 cut(s) 127, 165, 532, 619, 633, 770, 1084, 1169
AhlI ACTAGT 1 cut(s) 56
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 3 cut(s) 504, 658, 891
AluBI AGCT 5 cut(s) 90, 179, 436, 699, 900
AluI AGCT 5 cut(s) 90, 179, 436, 699, 900
Alw26I GTCTC 2 cut(s) 495, 817
AlwI GGATC 3 cut(s) 2, 252, 971
AoxI GGCC 2 cut(s) 448, 782
ApoI RAATTY 1 cut(s) 1084
AsuHPI GGTGA 3 cut(s) 593, 1052, 1194
BanII GRGCYC 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 1191
BccI CCATC 6 cut(s) 56, 303, 598, 774, 863, 1133
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 4 cut(s) 236, 270, 404, 438
BciT130I CCWGG 3 cut(s) 506, 660, 893
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 495, 817
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 3 cut(s) 57, 299, 326
BfmI CTRYAG 2 cut(s) 198, 413
BisI GCNGC 1 cut(s) 1103
BlsI GCNGC 1 cut(s) 1104
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 506, 660, 893
BmgBI CACGTC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 887
BmrFI CCNGG 3 cut(s) 506, 660, 893
BmsI GCATC 1 cut(s) 966
BoxI GACNNNNGTC 1 cut(s) 1255
BpiI GAAGAC 1 cut(s) 1191
BplI GAGNNNNNCTC 6 cut(s) 769, 801, 814, 846, 1236, 1268
BpmI CTGGAG 1 cut(s) 937
BpuEI CTTGAG 1 cut(s) 1004
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 269, 891
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 511, 1274
Bse118I RCCGGY 1 cut(s) 759
Bse1I ACTGG 1 cut(s) 1227
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 3 cut(s) 506, 660, 893
BseDI CCNNGG 2 cut(s) 269, 891
BseGI GGATG 2 cut(s) 855, 1144
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 3 cut(s) 321, 511, 1274
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 1 cut(s) 1227
BseYI CCCAGC 2 cut(s) 179, 755
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 450, 784
BsiSI CCGG 2 cut(s) 447, 760
BslI CCNNNNNNNGG 3 cut(s) 321, 511, 1274
BsmAI GTCTC 2 cut(s) 495, 817
BsmI GAATGC 4 cut(s) 133, 163, 302, 625
BsnI GGCC 2 cut(s) 450, 784
Bso31I GGTCTC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 890
Bsp143I GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
BspACI CCGC 2 cut(s) 219, 1102
BspANI GGCC 2 cut(s) 450, 784
BspCNI CTCAG 2 cut(s) 4, 475
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 887
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 3 cut(s) 2, 252, 971
BspQI GCTCTTC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 759
BsrI ACTGG 1 cut(s) 1227
BssAI RCCGGY 1 cut(s) 759
BssECI CCNNGG 2 cut(s) 269, 891
BssMI GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 3 cut(s) 506, 660, 893
Bst4CI ACNGT 3 cut(s) 528, 629, 1092
Bst6I CTCTTC 2 cut(s) 97, 493
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 545, 898, 1053
BstDEI CTNAG 4 cut(s) 12, 118, 386, 462
BstF5I GGATG 2 cut(s) 855, 1144
BstKTI GATC 9 cut(s) 10, 21, 83, 151, 260, 292, 476, 979, 1222
BstMAI GTCTC 2 cut(s) 495, 817
BstMBI GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstNI CCWGG 3 cut(s) 506, 660, 893
BstNSI RCATGY 1 cut(s) 936
BstPAI GACNNNNGTC 1 cut(s) 1255
BstSCI CCNGG 3 cut(s) 504, 658, 891
BstSFI CTRYAG 2 cut(s) 198, 413
BstV2I GAAGAC 1 cut(s) 1191
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 2 cut(s) 450, 784
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 2 cut(s) 855, 1144
BtsI GCAGTG 1 cut(s) 1129
BtsIMutI CAGTG 1 cut(s) 1129
Cac8I GCNNGC 3 cut(s) 545, 898, 1053
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 759
CseI GACGC 1 cut(s) 93
CsiI ACCWGGT 1 cut(s) 504
Csp6I GTAC 2 cut(s) 54, 1230
CviQI GTAC 2 cut(s) 54, 1230
DdeI CTNAG 4 cut(s) 12, 118, 386, 462
DpnI GATC 9 cut(s) 9, 20, 82, 150, 259, 291, 475, 978, 1221
DpnII GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 97, 493
EarI CTCTTC 2 cut(s) 97, 493
Eco130I CCWWGG 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 890
Eco31I GGTCTC 1 cut(s) 495
Eco32I GATATC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 504, 658, 891
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 890
ErhI CCWWGG 1 cut(s) 269
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 1103
FokI GGATG 2 cut(s) 842, 1151
FriOI GRGCYC 1 cut(s) 890
Fsp4HI GCNGC 1 cut(s) 1103
FspBI CTAG 3 cut(s) 57, 299, 326
GluI GCNGC 1 cut(s) 1103
GsaI CCCAGC 2 cut(s) 183, 759
GsuI CTGGAG 1 cut(s) 937
HaeIII GGCC 2 cut(s) 450, 784
HapII CCGG 2 cut(s) 447, 760
HgaI GACGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 104
HinfI GANTC 5 cut(s) 283, 406, 443, 483, 1251
HpaII CCGG 2 cut(s) 447, 760
HphI GGTGA 3 cut(s) 593, 1052, 1194
Hpy166II GTNNAC 1 cut(s) 1232
Hpy188I TCNGA 6 cut(s) 31, 99, 554, 678, 976, 993
Hpy8I GTNNAC 1 cut(s) 1232
HpyAV CCTTC 5 cut(s) 94, 197, 591, 1129, 1203
HpyCH4III ACNGT 3 cut(s) 528, 629, 1092
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 7 cut(s) 131, 239, 415, 493, 743, 1051, 1122
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 4 cut(s) 12, 118, 386, 462
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 3 cut(s) 651, 885, 905
LweI GCATC 1 cut(s) 966
MabI ACCWGGT 1 cut(s) 504
MaeI CTAG 3 cut(s) 57, 299, 326
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 456, 1124
MalI GATC 9 cut(s) 9, 20, 82, 150, 259, 291, 475, 978, 1221
MboI GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
MboII GAAGA 4 cut(s) 84, 510, 782, 1191
MfeI CAATTG 1 cut(s) 365
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 890
MluCI AATT 6 cut(s) 353, 365, 575, 613, 690, 1084
MlyI GAGTC 4 cut(s) 277, 415, 452, 1245
MmeI TCCRAC 2 cut(s) 260, 927
MseI TTAA 3 cut(s) 174, 1284, 1294
MslI CAYNNNNRTG 2 cut(s) 156, 606
MspI CCGG 2 cut(s) 447, 760
MspR9I CCNGG 3 cut(s) 506, 660, 893
MunI CAATTG 1 cut(s) 365
Mva1269I GAATGC 4 cut(s) 133, 163, 302, 625
MvaI CCWGG 3 cut(s) 506, 660, 893
MwoI GCNNNNNNNGC 1 cut(s) 570
NdeII GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
NlaIV GGNNCC 1 cut(s) 887
NmuCI GTSAC 1 cut(s) 1124
NspI RCATGY 1 cut(s) 936
PagI TCATGA 1 cut(s) 151
PciI ACATGT 1 cut(s) 932
PciSI GCTCTTC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 4 cut(s) 133, 163, 302, 625
PfeI GAWTC 1 cut(s) 483
PflMI CCANNNNNTGG 1 cut(s) 511
PfoI TCCNGGA 1 cut(s) 658
PkrI GCNGC 1 cut(s) 1104
PleI GAGTC 4 cut(s) 277, 414, 451, 1245
PpsI GAGTC 4 cut(s) 277, 414, 451, 1245
PscI ACATGT 1 cut(s) 932
PshAI GACNNNNGTC 1 cut(s) 1255
Psp6I CCWGG 3 cut(s) 504, 658, 891
PspFI CCCAGC 2 cut(s) 179, 755
PspGI CCWGG 3 cut(s) 504, 658, 891
PspN4I GGNNCC 1 cut(s) 887
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 2 cut(s) 55, 1231
RsaNI GTAC 2 cut(s) 54, 1230
RseI CAYNNNNRTG 2 cut(s) 156, 606
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 174, 1284, 1294
SatI GCNGC 1 cut(s) 1103
Sau3AI GATC 9 cut(s) 7, 18, 80, 148, 257, 289, 473, 976, 1219
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 4 cut(s) 277, 415, 452, 1245
ScrFI CCNGG 3 cut(s) 506, 660, 893
SduI GDGCHC 1 cut(s) 890
SexAI ACCWGGT 1 cut(s) 504
SfaNI GCATC 1 cut(s) 966
SfcI CTRYAG 2 cut(s) 198, 413
SmiMI CAYNNNNRTG 2 cut(s) 156, 606
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 6 cut(s) 353, 365, 575, 613, 690, 1084
SsiI CCGC 2 cut(s) 219, 1102
SspMI CTAG 3 cut(s) 57, 299, 326
StyD4I CCNGG 3 cut(s) 504, 658, 891
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 3 cut(s) 528, 629, 1092
TaiI ACGT 1 cut(s) 402
TaqI TCGA 7 cut(s) 21, 79, 256, 424, 438, 1027, 1249
TasI AATT 6 cut(s) 353, 365, 575, 613, 690, 1084
TatI WGTACW 2 cut(s) 53, 1229
TauI GCSGC 1 cut(s) 1105
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 3 cut(s) 174, 1284, 1294
Tru9I TTAA 3 cut(s) 174, 1284, 1294
TscAI CASTG 1 cut(s) 1129
TseFI GTSAC 1 cut(s) 1124
Tsp45I GTSAC 1 cut(s) 1124
TspRI CASTG 1 cut(s) 1129
Van91I CCANNNNNTGG 1 cut(s) 511
XapI RAATTY 1 cut(s) 1084
XceI RCATGY 1 cut(s) 936
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 3 cut(s) 57, 299, 326
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.