Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Forward (+)

17774832 .. 17776320

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCCGGAATTGGACCGATAACTCAGGATTGGGAGCCGGTGGTGATCCGTAAGAAACCCGCTAACGCCGCTGCCAAGCGCGACGAGAAAACTGTCAACGCCGCTCGTCGATCCGGCGCCGATATCGAGACCGTCAGAAAATTCAATGCTGGAACCAACAAGGCGGCATCAAGCGGCACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAGACAAGAAGCTAACCCAGTCCCAACTTGCTCAAATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGCAAAGCTATACCCAACCAGCAAATCCTTTCTAAGCTGGAGAGAGCGCTTGGAGCTAAGCTTCGTGGAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

142

Amino Acids

15.62

Weight (kDa)

9.9

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	9 - 79	3.3e-23	Multiprotein bridging factor 1
HTH_3	PF01381	87 - 138	1.7e-12	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	60, 69, 102, 164, 174
AclWI	GGATC	2 cut(s)	40, 105
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	145, 338
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	6 cut(s)	247, 286, 359, 388, 407, 412
AluI	AGCT	6 cut(s)	247, 286, 359, 388, 407, 412
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	40, 105
Aor51HI	AGCGCT	1 cut(s)	399
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	3 cut(s)	81, 119, 400
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	122
BfoI	RGCGCY	2 cut(s)	120, 401
BisI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	5 cut(s)	70, 73, 103, 166, 176
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	36, 118, 154
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	38, 204, 234
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	6, 38, 114
BslFI	GGGAC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	45, 110
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	5 cut(s)	60, 69, 102, 164, 174
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	37, 205, 235
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	36, 118, 154
BspPI	GGATC	2 cut(s)	40, 105
BspT107I	GGYRCC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	2 cut(s)	45, 110
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	94, 133
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	5 cut(s)	24, 213, 243, 384, 408
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	2 cut(s)	120, 401
BstHHI	GCGC	3 cut(s)	81, 119, 400
BstKTI	GATC	2 cut(s)	48, 113
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	45, 110
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 244, 404
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	3 cut(s)	81, 119, 400
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	1 cut(s)	227
DdeI	CTNAG	5 cut(s)	24, 213, 243, 384, 408
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	2 cut(s)	47, 112
DpnII	GATC	2 cut(s)	45, 110
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	14
Eco47III	AGCGCT	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	124
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
FaeI	CATG	1 cut(s)	230
FaiI	YATR	4 cut(s)	228, 263, 345, 362
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
Fsp4HI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
GlaI	GCGC	3 cut(s)	80, 118, 399
GluI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	2 cut(s)	120, 401
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	6, 38, 114
HhaI	GCGC	3 cut(s)	81, 119, 400
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	3 cut(s)	79, 117, 398
HinP1I	GCGC	3 cut(s)	79, 117, 398
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	2 cut(s)	334, 347
HpaII	CCGG	3 cut(s)	6, 38, 114
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	137, 186
Hpy188III	TCNNGA	4 cut(s)	26, 127, 227, 338
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	86, 111
HpyCH4III	ACNGT	2 cut(s)	94, 133
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 244, 404
HpyF3I	CTNAG	5 cut(s)	24, 213, 243, 384, 408
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	3 cut(s)	79, 117, 398
KasI	GGCGCC	1 cut(s)	116
Kzo9I	GATC	2 cut(s)	45, 110
LmnI	GCTCC	2 cut(s)	34, 404
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	176
MaeII	ACGT	1 cut(s)	232
MalI	GATC	2 cut(s)	47, 112
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	2 cut(s)	45, 110
MluCI	AATT	2 cut(s)	9, 140
Mly113I	GGCGCC	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	356
MslI	CAYNNNNRTG	2 cut(s)	194, 231
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	6, 38, 114
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	68, 244, 404
NarI	GGCGCC	1 cut(s)	117
NdeII	GATC	2 cut(s)	45, 110
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	3 cut(s)	36, 118, 154
PagI	TCATGA	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	70, 73, 103, 166, 176
PleI	GAGTC	1 cut(s)	355
PluTI	GGCGCC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	36, 118, 154
PspPI	GGNCC	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	194, 231
SatI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
Sau3AI	GATC	2 cut(s)	45, 110
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	8 cut(s)	222, 235, 249, 288, 361, 390, 409, 414
SfaNI	GCATC	1 cut(s)	176
SfoI	GGCGCC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	194, 231
Sse9I	AATT	2 cut(s)	9, 140
SsiI	CCGC	5 cut(s)	60, 69, 102, 164, 174
SspDI	GGCGCC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	94, 133
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	109, 126
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	9, 140
TauI	GCSGC	4 cut(s)	71, 104, 167, 177
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.