Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Reverse (-)

9886247 .. 9889478

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G116500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCAGGAGGACCCATCACACAGGACTGGGAGCCCGTGGTTATCAGGAAGAAGGCACCCACCGCCGCCGCCAAGAAGGATGAGAAAGCTGTCAACGCTGCTCGCCGCTCTGGCGCTGAGATCGAAACCCTAAAGAAAGCTACTGCTGGGACCAATAAAGCTGCCTCCAGCAGCACTACCTTGAACACAAGGAAGCTCGATGAGGAAACAGAGAACCTTGCTCATGAACGTGTGCCAAGTGAGCTGAAGAAAGCTATTATGCAAGCTCGAATGGATAAGAAGCTTACCCAGTCTCAGCTTGCTCAAATTATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAATCTGGGAAGGCTATTCCAAATCAGCAGGTAATTACCAAGTTGGAGAGAGCTCTTGGAGCGAAACTGCGTGGAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

142

Amino Acids

15.45

Weight (kDa)

9.91

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	4 cut(s)	63, 66, 69, 106
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	98, 161, 171
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	11, 150
AvaII	GGWCC	2 cut(s)	11, 150
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	36, 397
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	85, 148, 183
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	361
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
BlsI	GCNGC	6 cut(s)	67, 70, 100, 107, 163, 173
Bme18I	GGWCC	2 cut(s)	11, 150
BmgT120I	GGNCC	2 cut(s)	11, 150
BmiI	GGNNCC	4 cut(s)	13, 33, 57, 151
BmrI	ACTGGG	2 cut(s)	37, 283
BmuI	ACTGGG	2 cut(s)	37, 283
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	36
Bse1I	ACTGG	2 cut(s)	32, 289
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	108, 308
BseNI	ACTGG	2 cut(s)	32, 289
BseXI	GCAGC	3 cut(s)	85, 148, 183
BseYI	CCCAGC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	36, 397
Bsp143I	GATC	2 cut(s)	120, 330
BspACI	CCGC	4 cut(s)	63, 66, 69, 106
BspCNI	CTCAG	2 cut(s)	109, 307
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	13, 33, 57, 151
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	32, 289
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	120, 330
BstC8I	GCNNGC	3 cut(s)	103, 264, 300
BstDEI	CTNAG	2 cut(s)	117, 294
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	123, 333
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	120, 330
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 95, 111, 241, 401
BstV1I	GCAGC	3 cut(s)	85, 148, 183
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	85
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	103, 264, 300
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	11, 150
CviAII	CATG	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	117, 294
DpnI	GATC	2 cut(s)	122, 332
DpnII	GATC	2 cut(s)	120, 330
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	2 cut(s)	36, 397
Eco47I	GGWCC	2 cut(s)	11, 150
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	11
EcoT38I	GRGCYC	2 cut(s)	36, 397
FaeI	CATG	1 cut(s)	227
FaiI	YATR	3 cut(s)	225, 260, 342
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	36, 397
Fsp4HI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	117
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	3 cut(s)	6, 46, 224
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	46, 70, 346
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 95, 111, 241, 401
HpyF3I	CTNAG	2 cut(s)	117, 294
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	120, 330
LmnI	GCTCC	2 cut(s)	31, 401
LpnPI	CCDG	9 cut(s)	8, 13, 31, 96, 132, 181, 302, 333, 356
Lsp1109I	GCAGC	3 cut(s)	85, 148, 183
MaeII	ACGT	1 cut(s)	229
MalI	GATC	2 cut(s)	122, 332
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	2 cut(s)	120, 330
MboII	GAAGA	2 cut(s)	61, 259
MhlI	GDGCHC	2 cut(s)	36, 397
MluCI	AATT	2 cut(s)	306, 375
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	3 cut(s)	175, 196, 333
MslI	CAYNNNNRTG	1 cut(s)	228
MwoI	GCNNNNNNNGC	5 cut(s)	62, 95, 111, 241, 401
NdeII	GATC	2 cut(s)	120, 330
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	4 cut(s)	13, 33, 57, 151
PagI	TCATGA	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	6 cut(s)	67, 70, 100, 107, 163, 173
PpuMI	RGGWCCY	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	4 cut(s)	13, 33, 57, 151
PspPI	GGNCC	2 cut(s)	11, 150
PspPPI	RGGWCCY	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	397
SatI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
Sau3AI	GATC	2 cut(s)	120, 330
Sau96I	GGNCC	2 cut(s)	11, 150
SduI	GDGCHC	2 cut(s)	36, 397
SinI	GGWCC	2 cut(s)	11, 150
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	306, 375
SsiI	CCGC	4 cut(s)	63, 66, 69, 106
SstI	GAGCTC	1 cut(s)	397
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	123, 198, 268
TasI	AATT	2 cut(s)	306, 375
TauI	GCSGC	3 cut(s)	68, 71, 108
TfiI	GAWTC	1 cut(s)	344
TseI	GCWGC	3 cut(s)	98, 161, 171
TspDTI	ATGAA	2 cut(s)	240, 357
VpaK11BI	GGWCC	2 cut(s)	11, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.