Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Forward (+)

45927793 .. 45932149

Gene Structure 4357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCAGGAATCGGACCAATCTCACAGGACTGGGAACCCGTCGTAATCCGGAAGAAGGCACCTAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCTGCTCGCCGTGCCGGCGCCGAGATCGAAACCGTCAAGAAAGCTACTGCTGGACTTAACAAGGCTGCCTCCAGCAGCACTTCTCTAAACACAAGGAAGCTTGATGAGGAAACAGAAGTTCTTGCTCATGAGCGTGTTCCAAGTGAGCTGAAGAAAGCTATTATGCAAGCTCGTATGGATAAGAAGCTTACTCAGGCTCAGCTTGCACAAATTATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAATCTGGGAAAGCTATTCCAAACCAACAGGTAATTGGCAAGTTAGAGAGAGCTCTGGGAGCTAAACTGCGTGGAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

142

Amino Acids

15.45

Weight (kDa)

9.91

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	9 - 79	2.6e-24	Multiprotein bridging factor 1
HTH_3	PF01381	87 - 138	3.9e-12	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 116
AccIII	TCCGGA	1 cut(s)	48
AciI	CCGC	2 cut(s)	69, 72
AclWI	GGATC	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	400
AlwI	GGATC	1 cut(s)	328
Aor13HI	TCCGGA	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	101, 164, 174
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	58, 116
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	88, 151, 186
BceAI	ACGGC	2 cut(s)	77, 93
BfoI	RGCGCY	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	5 cut(s)	70, 73, 103, 166, 176
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	36, 60, 118
BmrI	ACTGGG	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	305, 311
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	88, 151, 186
BshNI	GGYRCC	2 cut(s)	58, 116
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	49, 114
BslI	CCNNNNNNNGG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	123, 333
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	2 cut(s)	69, 72
BspCNI	CTCAG	2 cut(s)	304, 310
BspEI	TCCGGA	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	36, 60, 118
BspPI	GGATC	1 cut(s)	328
BspT107I	GGYRCC	2 cut(s)	58, 116
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	2 cut(s)	123, 333
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	106, 115, 267, 303
BstDEI	CTNAG	2 cut(s)	291, 297
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	126, 336
BstMBI	GATC	2 cut(s)	123, 333
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 98, 110, 114, 302, 404
BstV1I	GCAGC	3 cut(s)	88, 151, 186
Cac8I	GCNNGC	4 cut(s)	106, 115, 267, 303
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	291, 297
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	2 cut(s)	125, 335
DpnII	GATC	2 cut(s)	123, 333
Ecl136II	GAGCTC	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
FaeI	CATG	1 cut(s)	230
FaiI	YATR	4 cut(s)	228, 263, 275, 345
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	120
HapII	CCGG	2 cut(s)	49, 114
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	197, 284
HinfI	GANTC	2 cut(s)	9, 347
HpaII	CCGG	2 cut(s)	49, 114
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	4 cut(s)	6, 49, 136, 227
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	49, 73
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	265, 305
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 98, 110, 114, 302, 404
HpyF3I	CTNAG	2 cut(s)	291, 297
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	117
KasI	GGCGCC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	48
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	123, 333
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	3 cut(s)	88, 151, 186
MalI	GATC	2 cut(s)	125, 335
MboI	GATC	2 cut(s)	123, 333
MboII	GAAGA	2 cut(s)	64, 262
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	309, 378
Mly113I	GGCGCC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	178, 199, 336
MroI	TCCGGA	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	2 cut(s)	49, 114
MwoI	GCNNNNNNNGC	6 cut(s)	65, 98, 110, 114, 302, 404
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	117
NdeII	GATC	2 cut(s)	123, 333
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	3 cut(s)	36, 60, 118
NmeAIII	GCCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	9, 347
PkrI	GCNGC	5 cut(s)	70, 73, 103, 166, 176
PluTI	GGCGCC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	36, 60, 118
PspPI	GGNCC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
Sau3AI	GATC	2 cut(s)	123, 333
Sau96I	GGNCC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	400
SfoI	GGCGCC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	309, 378
SsiI	CCGC	2 cut(s)	69, 72
SspDI	GGCGCC	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	309, 378
TauI	GCSGC	2 cut(s)	71, 74
TfiI	GAWTC	2 cut(s)	9, 347
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	3 cut(s)	101, 164, 174
TspDTI	ATGAA	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.