Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Forward (+)

31871011 .. 31878409

Gene Structure 7399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGAACGACTTCTCGGGTCTCTTAAACTCCGATTACGGCTTCAAGCCCTCCGGCAAATCGGCCCCAATGTCTTCTTCTTCAAAGCCCCCAGCTTTCGATCTCGGATCCACCGGACCCTCCTCCAGATCAACTCGCACCTCCAATTCCTTCAACGGGTCCTTCTCCGACGATCGCGACCCGATCTTCGGAGCCCCGAAAGCCCAAGACTTTGAGAACATCTTCGGCGGCTCGGCCAGGTTCTCCACCAATTCCGAAGCTTTCAACTTGGATTCCATCTACGGCGGCGGTGGGCCCGCTGACTCCGCCTCCTCCAAGGTCGCCGATTCCGGCCCCGTTTTCGACAAGCCGGTTTACGACGAGGACATTTTCGACGGCGTTGCGGGGCTGAAGAGCTCAGCCGCGAACGACATTTTCTCCTCGACGGTGACGTCGCCGCCGCCGCCGCCGCGGGGGAGTGATAGTAGTGCGTTTGATGACCTTCTCGGTGGGTTTGGCAAGGCTGAGCCGGCGGCGTCGTCGTCGAAAAGCTCTAGCTCACAGAAAGCTGACGTGGGTGTGCCGCCGGGTTTCGATGAATTGTTACCTGGATTTGGAGCTAGTAGCAGCCCCCAAACTGAAAGGTCAAACTCAGAAGCCAACTGGCCCCCAGAGGCAACTGCCAATGTGAGTAAAACAACAACTTCCAAGGTGATTGGCGATCCTTTTGGAGTAGCAGGCCAGTTTAATGACCCCTTGGAGGAAATAAGTAGACTTTCTAATTCTGGAAGCTTGAAGGCTGATAACCCGTCTGTTGATAACGGGCGAGCATTTGATGATATAGATCCCTTTGATGGCCTTGGGAAGTCGGTCCCCGCATTTTCTTCAGGGAGGAGTTTCAGGGGAAAGGATAGTGGTAATTTAAAGGCAGATACAAGCACAAATAATGGCAGAGGTTCAACTGGTAAAGAATCAACCAAGTCTTCTGTGAGAAGTCCAGATAACCAGTCTCAGAGGAAGGTTCCTGTTGGAAATCATTGGGATCCTCATCAGACCTTTTTTGACATGCCTTCAGTTTCGACTGATTCTCACAAATCTGCAGGTCAAACTATGTCTCCACCTTCGTATGTAAATGCCAAGGAAGCAAATGTACCGGTGGATAGGTCTTCAAGATCTGAAGAAAACTTGGATTCATCAGATAATGTATGGCTTACGGTATCAGAGATCCCTCTAATGACTCAGCCTACTAGTGCTCCACCACCTTCAAGACCACCTCCTCCAAGACCTGTGCAGGTTTCAAAGCCAAGAATGAGTTCTCCTGCTTCTACAAATTCAAGAAAGAAGTCTAGTGAATCCTCTACTGAGTTCTTTCAGGCTCCAAAATCAGCCTCTGCTGCAGCTAGGAGCTCTGGTGTTTCTTCAGTTGACGAACTTGGCGATTTTGGCATGGGAAAGAGCCAAACTAACTTTGATGAACATGCAAATGGTCTTTCGGGTGAAGAATCGGAGCGGAACTCAGTTACTGATGCTGTGAAGGAGGCTATGGATAAAGCTGAGTTTAAAATGAGGCAGGCAAAAGAGAGAGGAAGTACAAAGTCTGCGAGAAGTAAAGAAGCACAGGAGAAGGAAAAAGAACGGCTGCAGAGGGAGAGCGAAGAGGAAGATATGGAACAGAGGAGACTGGAGAAAGAGAGGGAAACTGAGAGGGTGTGGGAAGACAAAGAAAGAGAGCAAAGGAAACTTGAGAAGGAAAGGGAGAGAGCCAGGGTGATGGAGGAGAAGAACAGACAAGCTGTGGAAAGAGCTACTAGGGAAGCACGTGAGAGAGCGGCAGCTGAAGCTCACAGTAAGGCTGAAAGGGCTAAAACAGAGAGAGCTGCTGTTGACAGGGCAAATGCTGAAGCTAGAGCACGTGCTGAAAGGGCTGCAGTTCAGAGAGCTCAATCTGAAGCTCGGGAAAGGGCTGCAGCAGAAGCAAAGTTAAGAGCAGAAAAGGCTGCTGCAGAAGCCAGAGAAAGAGCTAATGCAGAAGCTAAGGAGAGGGAAGCAAGGGAGAGAACTGCTGCAGCAAGGTCTGAAGCTGAAGCTCGAACAAGATCGGAGCGTGCTGCGGTGGAAAGGGCTGCTGCAGAGGCCCGAGAAAGGGCTAATGCTGCTGCGAGGGCGAGCCAACAAAGGAATGAAAATGATCTTGAGAACTTTTTCAACATGGGTCGGGCTAGCAGTGCGCCACGACCCAGGGCTAACTCATCGGATCCTTTTGATGCCCATTTTCAGAACAGGCAACAGCCTGAAGTGCCGAAGACATCAACTTCCTCAAACATAAAGAAAGCGTCTTCAACCACAAATATTGTTGATGATCTTTCATCAATTTTTGGAGCTGCTCCATCATCTAATGAGTTCCAAGAAGTTGAAGGAGAAACTGAAGAAAGGCGAAGAGCCAGGTTGGAACGACACCAAAGGACCAAGGAGCGTACGGTGAAAGCACTTGCTGAAAAGAACGAGCGAGACCTTCAAGCCCAAAGAGAACAAGCTGAGAGACATAGAATTGCTGAAACACTAGATGTTGAGATTAAGCGCTGGGCTGCAGGAAAAGAAGGAAATTTACGTGCTCTGCTGTCAACTATGCAATATGTACTGTGGCCTGAATGTGGTTGGCAGCCAGTTTCCTTGACTGATATGATTAATGCTGCCCAAGTGAAGAAAGTATATAGAAAGGCAACTTTGTGTATTCATCCTGATAAGGTACAACAGAAAGGTGCCAATCTTCAACAGAAGTATGTAGCTGAGAAGGTGTTCGACCTCCTTAAGGAAGCTTGGAACAAGTTCAATTCAGAGGAGCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

941

Amino Acids

102.84

Weight (kDa)

6.23

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	427
AatII	GACGTC	1 cut(s)	431
Acc36I	ACCTGC	2 cut(s)	1067, 1258
AccB1I	GGYRCC	1 cut(s)	2735
AccBSI	CCGCTC	2 cut(s)	1486, 1805
AccI	GTMKAC	1 cut(s)	748
AccII	CGCG	3 cut(s)	174, 401, 448
AclWI	GGATC	9 cut(s)	99, 112, 692, 815, 1013, 1026, 1195, 2225, 2238
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	1306, 2578
AcvI	CACGTG	2 cut(s)	1796, 1889
AcyI	GRCGYC	2 cut(s)	428, 512
AfaI	GTAC	5 cut(s)	1128, 1567, 2452, 2613, 2724
AfeI	AGCGCT	1 cut(s)	2555
AflII	CTTAAG	1 cut(s)	2783
AgeI	ACCGGT	1 cut(s)	1129
AhlI	ACTAGT	1 cut(s)	1223
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	5 cut(s)	233, 583, 1739, 2213, 2417
AjuI	GAANNNNNNNTTGG	4 cut(s)	58, 90, 1273, 1305
Alw21I	GWGCWC	6 cut(s)	395, 1231, 1385, 1888, 1918, 2590
Alw26I	GTCTC	6 cut(s)	23, 990, 1095, 1648, 2478, 2509
AlwI	GGATC	9 cut(s)	99, 112, 692, 815, 1013, 1026, 1195, 2225, 2238
AlwNI	CAGNNNCTG	2 cut(s)	1367, 1499
Ama87I	CYCGRG	3 cut(s)	13, 1929, 2112
Aor51HI	AGCGCT	1 cut(s)	2555
AoxI	GGCC	9 cut(s)	60, 231, 290, 328, 641, 715, 832, 2109, 2618
ApaI	GGGCCC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	1306, 2578
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AseI	ATTAAT	1 cut(s)	2661
AsiGI	ACCGGT	1 cut(s)	1129
Asp700I	GAANNNNTTC	6 cut(s)	8, 218, 1288, 2177, 2771, 2801
AspLEI	GCGC	2 cut(s)	2206, 2556
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	5 cut(s)	436, 700, 1484, 1756, 2467
AsuNHI	GCTAGC	1 cut(s)	2195
AvaI	CYCGRG	3 cut(s)	13, 1929, 2112
AvaII	GGWCC	4 cut(s)	113, 156, 847, 2439
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	3 cut(s)	104, 1018, 2230
BanI	GGYRCC	1 cut(s)	2735
BanII	GRGCYC	5 cut(s)	193, 294, 395, 1385, 1918
BarI	GAAGNNNNNNTAC	4 cut(s)	1110, 1142, 2565, 2597
BbrPI	CACGTG	2 cut(s)	1796, 1889
BbsI	GAAGAC	6 cut(s)	63, 951, 1134, 1698, 2285, 2304
Bbv12I	GWGCWC	6 cut(s)	395, 1231, 1385, 1888, 1918, 2590
BccI	CCATC	4 cut(s)	281, 824, 1741, 2371
BceAI	ACGGC	4 cut(s)	52, 295, 388, 1628
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	5 cut(s)	235, 585, 1741, 2215, 2419
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	6 cut(s)	23, 990, 1095, 1648, 2478, 2509
BcuI	ACTAGT	1 cut(s)	1223
BfaI	CTAG	9 cut(s)	531, 597, 1224, 1323, 1377, 1785, 1881, 2196, 2537
BfmI	CTRYAG	9 cut(s)	1074, 1371, 1616, 1902, 1941, 1977, 2040, 2103, 2562
BfoI	RGCGCY	1 cut(s)	2557
BfrI	CTTAAG	1 cut(s)	2783
BfuAI	ACCTGC	2 cut(s)	1067, 1258
BglII	AGATCT	1 cut(s)	1148
BlpI	GCTNAGC	2 cut(s)	394, 501
Bme1390I	CCNGG	6 cut(s)	235, 564, 585, 1741, 2215, 2419
Bme18I	GGWCC	4 cut(s)	113, 156, 847, 2439
BmeT110I	CYCGRG	3 cut(s)	13, 1929, 2112
BmgBI	CACGTC	1 cut(s)	550
BmrFI	CCNGG	6 cut(s)	235, 564, 585, 1741, 2215, 2419
BmsI	GCATC	2 cut(s)	1492, 2230
BmtI	GCTAGC	1 cut(s)	2199
BpiI	GAAGAC	6 cut(s)	63, 951, 1134, 1698, 2285, 2304
BplI	GAGNNNNNCTC	2 cut(s)	1475, 1507
BpmI	CTGGAG	2 cut(s)	106, 1679
Bpu10I	CCTNAGC	1 cut(s)	2010
Bpu1102I	GCTNAGC	2 cut(s)	394, 501
BpuEI	CTTGAG	2 cut(s)	1739, 2189
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	3 cut(s)	1796, 1889, 2585
BsaBI	GATNNNNATC	2 cut(s)	819, 1023
BsaHI	GRCGYC	2 cut(s)	428, 512
BsaI	GGTCTC	2 cut(s)	23, 2478
BsaWI	WCCGGW	2 cut(s)	110, 1129
Bse118I	RCCGGY	3 cut(s)	346, 505, 1129
Bse1I	ACTGG	6 cut(s)	644, 718, 943, 982, 1662, 2639
Bse8I	GATNNNNATC	2 cut(s)	819, 1023
BseBI	CCWGG	5 cut(s)	235, 585, 1741, 2215, 2419
BseGI	GGATG	1 cut(s)	2710
BseJI	GATNNNNATC	2 cut(s)	819, 1023
BseNI	ACTGG	6 cut(s)	644, 718, 943, 982, 1662, 2639
BseRI	GAGGAG	7 cut(s)	109, 298, 406, 883, 1242, 1666, 1766
BseSI	GKGCMC	1 cut(s)	294
BseYI	CCCAGC	2 cut(s)	88, 2556
BsgI	GTGCAG	1 cut(s)	1286
Bsh1236I	CGCG	3 cut(s)	174, 401, 448
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	9 cut(s)	62, 233, 292, 330, 643, 717, 834, 2111, 2620
BshNI	GGYRCC	1 cut(s)	2735
BshTI	ACCGGT	1 cut(s)	1129
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	6 cut(s)	395, 1231, 1385, 1888, 1918, 2590
BsiHKCI	CYCGRG	3 cut(s)	13, 1929, 2112
BsiSI	CCGG	7 cut(s)	51, 111, 327, 347, 506, 563, 1130
BsiWI	CGTACG	1 cut(s)	2450
BslFI	GGGAC	1 cut(s)	833
BsmAI	GTCTC	6 cut(s)	23, 990, 1095, 1648, 2478, 2509
BsmFI	GGGAC	1 cut(s)	833
BsnI	GGCC	9 cut(s)	62, 233, 292, 330, 643, 717, 834, 2111, 2620
Bso31I	GGTCTC	2 cut(s)	23, 2478
BsoBI	CYCGRG	3 cut(s)	13, 1929, 2112
Bsp120I	GGGCCC	1 cut(s)	290
Bsp1286I	GDGCHC	8 cut(s)	193, 294, 395, 1231, 1385, 1888, 1918, 2590
Bsp1720I	GCTNAGC	2 cut(s)	394, 501
Bsp68I	TCGCGA	1 cut(s)	174
BspANI	GGCC	9 cut(s)	62, 233, 292, 330, 643, 717, 834, 2111, 2620
BspFNI	CGCG	3 cut(s)	174, 401, 448
BspMAI	CTGCAG	9 cut(s)	1078, 1375, 1620, 1906, 1945, 1981, 2044, 2107, 2566
BspMI	ACCTGC	2 cut(s)	1067, 1258
BspOI	GCTAGC	1 cut(s)	2199
BspPI	GGATC	9 cut(s)	99, 112, 692, 815, 1013, 1026, 1195, 2225, 2238
BspQI	GCTCTTC	2 cut(s)	383, 2407
BspT107I	GGYRCC	1 cut(s)	2735
BspTI	CTTAAG	1 cut(s)	2783
BspTNI	GGTCTC	2 cut(s)	23, 2478
BsrBI	CCGCTC	2 cut(s)	1486, 1805
BsrFI	RCCGGY	3 cut(s)	346, 505, 1129
BsrI	ACTGG	6 cut(s)	644, 718, 943, 982, 1662, 2639
BssAI	RCCGGY	3 cut(s)	346, 505, 1129
BssNI	GRCGYC	2 cut(s)	428, 512
BssT1I	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
Bst2UI	CCWGG	5 cut(s)	235, 585, 1741, 2215, 2419
Bst4CI	ACNGT	5 cut(s)	424, 1192, 1823, 2455, 2616
Bst6I	CTCTTC	3 cut(s)	383, 1626, 2407
BstACI	GRCGYC	2 cut(s)	428, 512
BstAFI	CTTAAG	1 cut(s)	2783
BstBAI	YACGTR	3 cut(s)	1796, 1889, 2585
BstC8I	GCNNGC	8 cut(s)	294, 507, 715, 804, 1548, 2082, 2143, 2197
BstDSI	CCRYGG	1 cut(s)	446
BstENI	CCTNNNNNAGG	1 cut(s)	2783
BstF5I	GGATG	1 cut(s)	2710
BstFNI	CGCG	3 cut(s)	174, 401, 448
BstH2I	RGCGCY	1 cut(s)	2557
BstHHI	GCGC	2 cut(s)	2206, 2556
BstMAI	GTCTC	6 cut(s)	23, 990, 1095, 1648, 2478, 2509
BstMCI	CGRYCG	1 cut(s)	172
BstNI	CCWGG	5 cut(s)	235, 585, 1741, 2215, 2419
BstNSI	RCATGY	2 cut(s)	1045, 1457
BstSCI	CCNGG	6 cut(s)	233, 562, 583, 1739, 2213, 2417
BstSFI	CTRYAG	9 cut(s)	1074, 1371, 1616, 1902, 1941, 1977, 2040, 2103, 2562
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	3 cut(s)	174, 401, 448
BstV2I	GAAGAC	6 cut(s)	63, 951, 1134, 1698, 2285, 2304
BstX2I	RGATCY	6 cut(s)	104, 820, 1018, 1148, 1200, 2230
BstXI	CCANNNNNNTGG	1 cut(s)	1747
BstYI	RGATCY	6 cut(s)	104, 820, 1018, 1148, 1200, 2230
BsuRI	GGCC	9 cut(s)	62, 233, 292, 330, 643, 717, 834, 2111, 2620
BtgI	CCRYGG	1 cut(s)	446
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	2710
BtsI	GCAGTG	1 cut(s)	2206
BtsIMutI	CAGTG	1 cut(s)	2206
BtuMI	TCGCGA	1 cut(s)	174
BveI	ACCTGC	2 cut(s)	1067, 1258
Cac8I	GCNNGC	8 cut(s)	294, 507, 715, 804, 1548, 2082, 2143, 2197
CaiI	CAGNNNCTG	2 cut(s)	1367, 1499
CfoI	GCGC	2 cut(s)	2206, 2556
Cfr10I	RCCGGY	3 cut(s)	346, 505, 1129
Cfr42I	CCGCGG	1 cut(s)	449
CseI	GACGC	2 cut(s)	501, 2298
Csp6I	GTAC	5 cut(s)	1127, 1566, 2451, 2612, 2723
CspAI	ACCGGT	1 cut(s)	1129
CspCI	CAANNNNNGTGG	2 cut(s)	2308, 2343
CviAII	CATG	4 cut(s)	1042, 1423, 1454, 2185
CviQI	GTAC	5 cut(s)	1127, 1566, 2451, 2612, 2723
DraI	TTTAAA	2 cut(s)	900, 1537
DrdI	GACNNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	3 cut(s)	383, 1626, 2407
EarI	CTCTTC	3 cut(s)	383, 1626, 2407
EciI	GGCGGA	1 cut(s)	292
Ecl136II	GAGCTC	3 cut(s)	393, 1383, 1916
Eco130I	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
Eco24I	GRGCYC	5 cut(s)	193, 294, 395, 1385, 1918
Eco31I	GGTCTC	2 cut(s)	23, 2478
Eco47I	GGWCC	4 cut(s)	113, 156, 847, 2439
Eco47III	AGCGCT	1 cut(s)	2555
Eco53kI	GAGCTC	3 cut(s)	393, 1383, 1916
Eco72I	CACGTG	2 cut(s)	1796, 1889
Eco88I	CYCGRG	3 cut(s)	13, 1929, 2112
EcoICRI	GAGCTC	3 cut(s)	393, 1383, 1916
EcoNI	CCTNNNNNAGG	1 cut(s)	2783
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	5 cut(s)	233, 583, 1739, 2213, 2417
EcoT14I	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
EcoT38I	GRGCYC	5 cut(s)	193, 294, 395, 1385, 1918
ErhI	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
FaeI	CATG	4 cut(s)	1045, 1426, 1457, 2188
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	4 cut(s)	1041, 1422, 1453, 2184
FauI	CCCGC	4 cut(s)	301, 373, 441, 859
FblI	GTMKAC	1 cut(s)	748
FokI	GGATG	1 cut(s)	2697
FriOI	GRGCYC	5 cut(s)	193, 294, 395, 1385, 1918
FspBI	CTAG	9 cut(s)	531, 597, 1224, 1323, 1377, 1785, 1881, 2196, 2537
GlaI	GCGC	2 cut(s)	2205, 2555
GsaI	CCCAGC	2 cut(s)	92, 2560
GsuI	CTGGAG	2 cut(s)	106, 1679
HaeII	RGCGCY	1 cut(s)	2557
HaeIII	GGCC	9 cut(s)	62, 233, 292, 330, 643, 717, 834, 2111, 2620
HapII	CCGG	7 cut(s)	51, 111, 327, 347, 506, 563, 1130
HgaI	GACGC	2 cut(s)	501, 2298
HhaI	GCGC	2 cut(s)	2206, 2556
Hin1I	GRCGYC	2 cut(s)	428, 512
Hin1II	CATG	4 cut(s)	1045, 1426, 1457, 2188
Hin6I	GCGC	2 cut(s)	2204, 2554
HinP1I	GCGC	2 cut(s)	2204, 2554
HincII	GTYRAC	3 cut(s)	1402, 1861, 2598
HindII	GTYRAC	3 cut(s)	1402, 1861, 2598
HindIII	AAGCTT	3 cut(s)	255, 766, 2790
HinfI	GANTC	9 cut(s)	269, 299, 323, 947, 1061, 1166, 1213, 1328, 1478
HpaII	CCGG	7 cut(s)	51, 111, 327, 347, 506, 563, 1130
HphI	GGTGA	5 cut(s)	436, 700, 1484, 1756, 2467
Hpy166II	GTNNAC	5 cut(s)	352, 749, 1402, 1861, 2598
Hpy8I	GTNNAC	5 cut(s)	352, 749, 1402, 1861, 2598
Hpy99I	CGWCG	8 cut(s)	170, 359, 374, 424, 433, 517, 520, 523
HpyCH4III	ACNGT	5 cut(s)	424, 1192, 1823, 2455, 2616
HpyCH4IV	ACGT	5 cut(s)	428, 549, 1795, 1888, 2584
HpySE526I	ACGT	5 cut(s)	428, 549, 1795, 1888, 2584
Hsp92I	GRCGYC	2 cut(s)	428, 512
Hsp92II	CATG	4 cut(s)	1045, 1426, 1457, 2188
HspAI	GCGC	2 cut(s)	2204, 2554
KroI	GCCGGC	1 cut(s)	505
KroNI	GCCGGC	1 cut(s)	507
KspI	CCGCGG	1 cut(s)	449
LguI	GCTCTTC	2 cut(s)	383, 2407
LweI	GCATC	2 cut(s)	1492, 2230
MaeI	CTAG	9 cut(s)	531, 597, 1224, 1323, 1377, 1785, 1881, 2196, 2537
MaeII	ACGT	5 cut(s)	428, 549, 1795, 1888, 2584
MaeIII	GTNAC	3 cut(s)	424, 579, 1495
MbiI	CCGCTC	2 cut(s)	1486, 1805
MflI	RGATCY	6 cut(s)	104, 820, 1018, 1148, 1200, 2230
MhlI	GDGCHC	8 cut(s)	193, 294, 395, 1231, 1385, 1888, 1918, 2590
MlyI	GAGTC	2 cut(s)	293, 1207
MmeI	TCCRAC	3 cut(s)	189, 985, 2403
MroNI	GCCGGC	1 cut(s)	505
MroXI	GAANNNNTTC	6 cut(s)	8, 218, 1288, 2177, 2771, 2801
MseI	TTAA	8 cut(s)	23, 723, 899, 1536, 1958, 2550, 2661, 2784
MslI	CAYNNNNRTG	1 cut(s)	1458
MspA1I	CMGCKG	3 cut(s)	296, 448, 1811
MspCI	CTTAAG	1 cut(s)	2783
MspI	CCGG	7 cut(s)	51, 111, 327, 347, 506, 563, 1130
MspR9I	CCNGG	6 cut(s)	235, 564, 585, 1741, 2215, 2419
MvaI	CCWGG	5 cut(s)	235, 585, 1741, 2215, 2419
MvnI	CGCG	3 cut(s)	174, 401, 448
NaeI	GCCGGC	1 cut(s)	507
NciI	CCSGG	1 cut(s)	564
NgoMIV	GCCGGC	1 cut(s)	505
NheI	GCTAGC	1 cut(s)	2195
NlaIII	CATG	4 cut(s)	1045, 1426, 1457, 2188
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	424
NruI	TCGCGA	1 cut(s)	174
NspI	RCATGY	2 cut(s)	1045, 1457
PasI	CCCWGGG	1 cut(s)	2214
PciSI	GCTCTTC	2 cut(s)	383, 2407
PcsI	WCGNNNNNNNCGW	2 cut(s)	425, 1410
PdiI	GCCGGC	1 cut(s)	507
PdmI	GAANNNNTTC	6 cut(s)	8, 218, 1288, 2177, 2771, 2801
PfeI	GAWTC	7 cut(s)	269, 323, 947, 1061, 1166, 1328, 1478
Pfl23II	CGTACG	1 cut(s)	2450
PinAI	ACCGGT	1 cut(s)	1129
Ple19I	CGATCG	1 cut(s)	172
PleI	GAGTC	2 cut(s)	293, 1207
PmaCI	CACGTG	2 cut(s)	1796, 1889
PmlI	CACGTG	2 cut(s)	1796, 1889
PpsI	GAGTC	2 cut(s)	293, 1207
Ppu21I	YACGTR	3 cut(s)	1796, 1889, 2585
PpuMI	RGGWCCY	1 cut(s)	156
PshBI	ATTAAT	1 cut(s)	2661
Psp124BI	GAGCTC	3 cut(s)	395, 1385, 1918
Psp5II	RGGWCCY	1 cut(s)	156
Psp6I	CCWGG	5 cut(s)	233, 583, 1739, 2213, 2417
PspCI	CACGTG	2 cut(s)	1796, 1889
PspFI	CCCAGC	2 cut(s)	88, 2556
PspGI	CCWGG	5 cut(s)	233, 583, 1739, 2213, 2417
PspLI	CGTACG	1 cut(s)	2450
PspOMI	GGGCCC	1 cut(s)	290
PspPPI	RGGWCCY	1 cut(s)	156
PstI	CTGCAG	9 cut(s)	1078, 1375, 1620, 1906, 1945, 1981, 2044, 2107, 2566
PstNI	CAGNNNCTG	2 cut(s)	1367, 1499
PsuI	RGATCY	6 cut(s)	104, 820, 1018, 1148, 1200, 2230
PvuI	CGATCG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	1811
RruI	TCGCGA	1 cut(s)	174
RsaI	GTAC	5 cut(s)	1128, 1567, 2452, 2613, 2724
RsaNI	GTAC	5 cut(s)	1127, 1566, 2451, 2612, 2723
RseI	CAYNNNNRTG	1 cut(s)	1458
SacI	GAGCTC	3 cut(s)	395, 1385, 1918
SacII	CCGCGG	1 cut(s)	449
SapI	GCTCTTC	2 cut(s)	383, 2407
SaqAI	TTAA	8 cut(s)	23, 723, 899, 1536, 1958, 2550, 2661, 2784
SchI	GAGTC	2 cut(s)	293, 1207
ScrFI	CCNGG	6 cut(s)	235, 564, 585, 1741, 2215, 2419
SduI	GDGCHC	8 cut(s)	193, 294, 395, 1231, 1385, 1888, 1918, 2590
SfaNI	GCATC	2 cut(s)	1492, 2230
SfcI	CTRYAG	9 cut(s)	1074, 1371, 1616, 1902, 1941, 1977, 2040, 2103, 2562
Sfr303I	CCGCGG	1 cut(s)	449
SgrBI	CCGCGG	1 cut(s)	449
SinI	GGWCC	4 cut(s)	113, 156, 847, 2439
SmiMI	CAYNNNNRTG	1 cut(s)	1458
SmlI	CTYRAG	3 cut(s)	1718, 2168, 2783
SmoI	CTYRAG	3 cut(s)	1718, 2168, 2783
SpeI	ACTAGT	1 cut(s)	1223
SspI	AATATT	1 cut(s)	2326
SspMI	CTAG	9 cut(s)	531, 597, 1224, 1323, 1377, 1785, 1881, 2196, 2537
SstI	GAGCTC	3 cut(s)	395, 1385, 1918
StyD4I	CCNGG	6 cut(s)	233, 562, 583, 1739, 2213, 2417
StyI	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
TaaI	ACNGT	5 cut(s)	424, 1192, 1823, 2455, 2616
TaiI	ACGT	5 cut(s)	431, 552, 1798, 1891, 2587
TaqI	TCGA	9 cut(s)	96, 339, 369, 419, 521, 570, 1055, 2065, 2775
TaqII	GACCGA	1 cut(s)	835
TatI	WGTACW	2 cut(s)	1565, 2611
TfiI	GAWTC	7 cut(s)	269, 323, 947, 1061, 1166, 1328, 1478
Tru1I	TTAA	8 cut(s)	23, 723, 899, 1536, 1958, 2550, 2661, 2784
Tru9I	TTAA	8 cut(s)	23, 723, 899, 1536, 1958, 2550, 2661, 2784
TscAI	CASTG	1 cut(s)	2206
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	7 cut(s)	17, 588, 1158, 1464, 2172, 2331, 2699
TspRI	CASTG	1 cut(s)	2206
Vha464I	CTTAAG	1 cut(s)	2783
VpaK11BI	GGWCC	4 cut(s)	113, 156, 847, 2439
VspI	ATTAAT	1 cut(s)	2661
XagI	CCTNNNNNAGG	1 cut(s)	2783
XapI	RAATTY	2 cut(s)	1306, 2578
XceI	RCATGY	2 cut(s)	1045, 1457
XmiI	GTMKAC	1 cut(s)	748
XmnI	GAANNNNTTC	6 cut(s)	8, 218, 1288, 2177, 2771, 2801
XspI	CTAG	9 cut(s)	531, 597, 1224, 1323, 1377, 1785, 1881, 2196, 2537
ZraI	GACGTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.