Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Forward (+)

21707247 .. 21708972

Gene Structure 1726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCCGGAATTGGACCGATTACTCAGGATTGGGAACCAGTTGTGATCCGCAAGAGAGCTCCTAACGCTGCAGCTAAGCGCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGAAAATTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGAGAAGAAGCTGACTCAGTCCCAACTTGCCCATCTGATCAATGAGAAGCCACAAGTGATCCAAGAATACGAGTCTGGGAAAGCAATTCCGAATCAACAGATCCTTTCAAAGCTGGAGAGGGCACTTGGTGCTAAACTCCGTGGAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

142

Amino Acids

15.58

Weight (kDa)

9.99

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	9 - 79	1.7e-24	Multiprotein bridging factor 1
HTH_3	PF01381	87 - 138	6.7e-13	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	116, 176
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	81
AciI	CCGC	4 cut(s)	49, 102, 114, 174
AclWI	GGATC	4 cut(s)	40, 160, 328, 370
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	404
AgsI	TTSAA	4 cut(s)	145, 187, 250, 384
AluBI	AGCT	6 cut(s)	59, 74, 199, 269, 286, 388
AluI	AGCT	6 cut(s)	59, 74, 199, 269, 286, 388
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	4 cut(s)	40, 160, 328, 370
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	68, 71, 164
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	81, 119
AspS9I	GGNCC	1 cut(s)	14
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	2 cut(s)	240, 400
BanI	GGYRCC	2 cut(s)	116, 176
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	55, 83, 151
BccI	CCATC	2 cut(s)	266, 315
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	200, 270
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	6 cut(s)	69, 72, 102, 115, 165, 175
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	6 cut(s)	70, 73, 103, 116, 166, 176
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	36, 118, 178
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	38, 204, 305
BseNI	ACTGG	1 cut(s)	38
BseSI	GKGCMC	2 cut(s)	240, 400
BseXI	GCAGC	3 cut(s)	55, 83, 151
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	116, 176
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	3 cut(s)	61, 240, 400
Bsp143I	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	49, 102, 114, 174
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	37, 205, 304
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	36, 118, 178
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	4 cut(s)	40, 160, 328, 370
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	2 cut(s)	116, 176
BspTNI	GGTCTC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	94, 133
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	4 cut(s)	24, 75, 213, 291
BstDSI	CCRYGG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	81, 119
BstKTI	GATC	6 cut(s)	48, 155, 232, 315, 336, 378
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 404
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	2 cut(s)	240, 400
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	55, 83, 151
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	81, 119
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	2 cut(s)	227, 262
DdeI	CTNAG	4 cut(s)	24, 75, 213, 291
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	6 cut(s)	47, 154, 231, 314, 335, 377
DpnII	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
DraIII	CACNNNGTG	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	61
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
FaeI	CATG	2 cut(s)	230, 265
FaiI	YATR	2 cut(s)	228, 263
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	226, 261
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	69, 72, 102, 115, 165, 175
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	6 cut(s)	69, 72, 102, 115, 165, 175
FspBI	CTAG	2 cut(s)	200, 270
GlaI	GCGC	2 cut(s)	80, 118
GluI	GCNGC	6 cut(s)	69, 72, 102, 115, 165, 175
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	2 cut(s)	81, 119
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	230, 265
Hin6I	GCGC	2 cut(s)	79, 117
HinP1I	GCGC	2 cut(s)	79, 117
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	289, 347, 367
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	312, 366
Hpy188III	TCNNGA	2 cut(s)	26, 227
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	86, 111
HpyCH4III	ACNGT	2 cut(s)	94, 133
HpyCH4V	TGCA	3 cut(s)	71, 167, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 404
HpyF3I	CTNAG	4 cut(s)	24, 75, 213, 291
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	230, 265
HspAI	GCGC	2 cut(s)	79, 117
KasI	GGCGCC	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	11, 19, 51, 135, 336, 374
Lsp1109I	GCAGC	3 cut(s)	55, 83, 151
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	200, 270
MalI	GATC	6 cut(s)	47, 154, 231, 314, 335, 377
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
MboII	GAAGA	3 cut(s)	100, 262, 292
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	61, 240, 400
MluCI	AATT	4 cut(s)	9, 140, 245, 360
Mly113I	GGCGCC	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	283, 356
MnlI	CCTC	3 cut(s)	190, 266, 387
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	65, 404
NarI	GGCGCC	1 cut(s)	117
NdeII	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
NlaIII	CATG	2 cut(s)	230, 265
NlaIV	GGNNCC	3 cut(s)	36, 118, 178
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	367
PflFI	GACNNNGTC	1 cut(s)	292
PkrI	GCNGC	6 cut(s)	70, 73, 103, 116, 166, 176
PleI	GAGTC	2 cut(s)	283, 355
PluTI	GGCGCC	1 cut(s)	120
PpsI	GAGTC	2 cut(s)	283, 355
Psp124BI	GAGCTC	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	36, 118, 178
PspPI	GGNCC	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	61
SatI	GCNGC	6 cut(s)	69, 72, 102, 115, 165, 175
Sau3AI	GATC	6 cut(s)	45, 152, 229, 312, 333, 375
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	283, 356
SduI	GDGCHC	3 cut(s)	61, 240, 400
SetI	ASST	7 cut(s)	61, 76, 182, 201, 271, 288, 390
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	9, 140, 245, 360
SsiI	CCGC	4 cut(s)	49, 102, 114, 174
SspDI	GGCGCC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	200, 270
SstI	GAGCTC	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	94, 133
TaqI	TCGA	3 cut(s)	109, 136, 155
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	9, 140, 245, 360
TauI	GCSGC	3 cut(s)	104, 117, 177
TfiI	GAWTC	1 cut(s)	367
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	3 cut(s)	68, 71, 164
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	140
XspI	CTAG	2 cut(s)	200, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.