Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Reverse (-)

32637471 .. 32640303

Gene Structure 2833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1265900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCAGGAGGACCCATCACGCAGGACTGGGAGCCCGTCGTCATCCGGAAGAAGGCACCCAACGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCCGCTCGCCGCTCCGGAGCTGAGATCGAAACCCTCAAGAAAGCAACTGCTGGGACCAATAAAGCTGCCTCCAGCAGCACTACTTTGAACACGAGGAAGCTTGATGATGAAACAGAGAACCTTGCTCATGAACGTGTGCCAAGTGAGCTGAAGAAGGCTATCATGCAAGCTCGAACTGATAAGAAGCTTACCCAGGCTCAACTTGCTCAAATCATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAATCTGGGAAGGCGATTCCAAATCAGCAGGTGATTACCAAGTTGGAGAGAGCTCTTGGAGCGAAACTGCGTGGAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

142

Amino Acids

15.4

Weight (kDa)

9.91

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	8 - 78	2.6e-24	Multiprotein bridging factor 1
HTH_3	PF01381	86 - 137	2.8e-12	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	2 cut(s)	101, 108
AccIII	TCCGGA	2 cut(s)	45, 110
AciI	CCGC	4 cut(s)	66, 69, 99, 106
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	7 cut(s)	116, 161, 196, 244, 266, 283, 395
AluI	AGCT	7 cut(s)	116, 161, 196, 244, 266, 283, 395
Alw21I	GWGCWC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	325
Aor13HI	TCCGGA	2 cut(s)	45, 110
ApeKI	GCWGC	2 cut(s)	161, 171
AspS9I	GGNCC	2 cut(s)	11, 150
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	11, 150
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	36, 397
BauI	CACGAG	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	148, 183
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
BlsI	GCNGC	6 cut(s)	67, 70, 100, 107, 163, 173
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	11, 150
BmgT120I	GGNCC	2 cut(s)	11, 150
BmiI	GGNNCC	4 cut(s)	13, 33, 57, 151
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	2 cut(s)	116, 309
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	2 cut(s)	45, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	32
BseAI	TCCGGA	2 cut(s)	45, 110
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	42, 85
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	148, 183
BseYI	CCCAGC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	46, 111
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	36, 397
Bsp13I	TCCGGA	2 cut(s)	45, 110
Bsp143I	GATC	2 cut(s)	120, 330
BspACI	CCGC	4 cut(s)	66, 69, 99, 106
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	2 cut(s)	45, 110
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	13, 33, 57, 151
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	2 cut(s)	101, 108
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	120, 330
BssSI	CACGAG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	103, 264
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	42, 85
BstKTI	GATC	2 cut(s)	123, 333
BstMBI	GATC	2 cut(s)	120, 330
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 95, 241, 299, 401
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	148, 183
BtsCI	GGATG	2 cut(s)	42, 85
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	103, 264
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	11, 150
CviAII	CATG	2 cut(s)	224, 259
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	122, 332
DpnII	GATC	2 cut(s)	120, 330
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	2 cut(s)	36, 397
Eco47I	GGWCC	2 cut(s)	11, 150
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	2 cut(s)	36, 397
FaeI	CATG	2 cut(s)	227, 262
FaiI	YATR	3 cut(s)	225, 260, 342
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	223, 258
Fnu4HI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
FokI	GGATG	2 cut(s)	29, 92
FriOI	GRGCYC	2 cut(s)	36, 397
Fsp4HI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
GluI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	151
HapII	CCGG	2 cut(s)	46, 111
Hin1II	CATG	2 cut(s)	227, 262
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	194, 281
HinfI	GANTC	2 cut(s)	344, 358
HpaII	CCGG	2 cut(s)	46, 111
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	5 cut(s)	6, 46, 111, 133, 224
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	46, 70, 244, 346
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 95, 241, 299, 401
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	227, 262
Kpn2I	TCCGGA	2 cut(s)	45, 110
Kzo9I	GATC	2 cut(s)	120, 330
LmnI	GCTCC	4 cut(s)	31, 113, 113, 401
Lsp1109I	GCAGC	2 cut(s)	148, 183
MaeII	ACGT	1 cut(s)	229
MalI	GATC	2 cut(s)	122, 332
MbiI	CCGCTC	2 cut(s)	101, 108
MboI	GATC	2 cut(s)	120, 330
MboII	GAAGA	2 cut(s)	61, 259
MhlI	GDGCHC	2 cut(s)	36, 397
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	4 cut(s)	140, 175, 183, 333
MroI	TCCGGA	2 cut(s)	45, 110
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	2 cut(s)	46, 111
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	62, 95, 241, 299, 401
NdeII	GATC	2 cut(s)	120, 330
NlaIII	CATG	2 cut(s)	227, 262
NlaIV	GGNNCC	4 cut(s)	13, 33, 57, 151
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	344, 358
PkrI	GCNGC	6 cut(s)	67, 70, 100, 107, 163, 173
PpuMI	RGGWCCY	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	4 cut(s)	13, 33, 57, 151
PspPI	GGNCC	2 cut(s)	11, 150
PspPPI	RGGWCCY	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	397
SatI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
Sau3AI	GATC	2 cut(s)	120, 330
Sau96I	GGNCC	2 cut(s)	11, 150
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	36, 397
SinI	GGWCC	2 cut(s)	11, 150
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	131, 324
SmoI	CTYRAG	2 cut(s)	131, 324
SsiI	CCGC	4 cut(s)	66, 69, 99, 106
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	123, 268
TauI	GCSGC	4 cut(s)	68, 71, 101, 108
TfiI	GAWTC	2 cut(s)	344, 358
TseI	GCWGC	2 cut(s)	161, 171
TspDTI	ATGAA	3 cut(s)	219, 240, 357
VpaK11BI	GGWCC	2 cut(s)	11, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.