Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Forward (+)

46749754 .. 46753461

Gene Structure 3708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAATAGGAGATGCGGCGGCGGCGAGCTTCATCTTCTGGCTCTAGAAGTTGGTGTTGACGAGGAGGTGGTAGTAGGCCATGGAGTTTCTCCGTGGCCACCGACCGAGCCATTGGGAGTCGCCGGTGCTGCGAGAGGCCTTGGCTTCATTAGAGAAGCGGTATCGCAAGCCATGTCAGGAGTCGGACCAATCTCACAGGACTGGGAACCCGTCGTAATCCGGAAGAAGGCACCCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCTGCTCGCCGTGCCGGCGCCGAGATCGAAACCGTCAAGAAAGCTACTGCTGGACTTAACAAGGCTGCCTCCAGCAGCACTTCTCTAAACACAAGGAAGCTCGATGAGGAAACCGAAGTTCTTGCTCATGAGCGTGTTCCAAGTGAGCTGAAGAAAGCTATTATGCAAGCTCGTATGGATAAGAAGCTTACTCAGGCTCAGCTTGCACAAATTATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAATCCGGGAAAGCTATTCCAAACCAACAGTTTAAGTTTGAACTAATTGCTGCACCTCCACCTGTATTTATCTTCCAAAAGGTTGTGTGTTTGGTGCAGGAAGTACCTGTGTTCTTAAGAATATTTATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

217

Amino Acids

23.44

Weight (kDa)

9.05

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	66 - 136	6.7e-24	Multiprotein bridging factor 1
HTH_3	PF01381	144 - 181	1.2e-07	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	229, 287
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	6 cut(s)	15, 18, 21, 158, 240, 243
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	621
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflII	CTTAAG	1 cut(s)	631
AgsI	TTSAA	1 cut(s)	557
AluBI	AGCT	9 cut(s)	28, 314, 370, 418, 428, 440, 457, 472, 530
AluI	AGCT	9 cut(s)	28, 314, 370, 418, 428, 440, 457, 472, 530
AlwI	GGATC	1 cut(s)	499
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	3 cut(s)	76, 95, 136
ApeKI	GCWGC	5 cut(s)	128, 272, 335, 345, 566
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	97
BanI	GGYRCC	2 cut(s)	229, 287
BbvI	GCAGC	5 cut(s)	115, 259, 322, 357, 553
BceAI	ACGGC	2 cut(s)	248, 264
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BcnI	CCSGG	1 cut(s)	523
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	285
BlpI	GCTNAGC	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	207, 231, 289
BmrFI	CCNGG	1 cut(s)	523
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	2
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	483
BpuMI	CCSGG	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	79, 92, 139
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	2 cut(s)	122, 284
Bse1I	ACTGG	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	79, 92, 139
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	476, 482
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	115, 259, 322, 357, 553
BsgI	GTGCAG	2 cut(s)	552, 632
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	78, 97, 138
BshNI	GGYRCC	2 cut(s)	229, 287
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	4 cut(s)	123, 220, 285, 522
BslI	CCNNNNNNNGG	1 cut(s)	226
BsnI	GGCC	3 cut(s)	78, 97, 138
Bsp13I	TCCGGA	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	294, 504
Bsp1720I	GCTNAGC	1 cut(s)	468
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	6 cut(s)	15, 18, 21, 158, 240, 243
BspANI	GGCC	3 cut(s)	78, 97, 138
BspCNI	CTCAG	2 cut(s)	475, 481
BspEI	TCCGGA	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	207, 231, 289
BspPI	GGATC	1 cut(s)	499
BspT107I	GGYRCC	2 cut(s)	229, 287
BspTI	CTTAAG	1 cut(s)	631
BsrFI	RCCGGY	2 cut(s)	122, 284
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	2 cut(s)	122, 284
BssECI	CCNNGG	3 cut(s)	79, 92, 139
BssMI	GATC	2 cut(s)	294, 504
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	79, 139
Bst4CI	ACNGT	2 cut(s)	304, 546
BstACI	GRCGYC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	631
BstC8I	GCNNGC	6 cut(s)	26, 168, 277, 286, 438, 474
BstDEI	CTNAG	2 cut(s)	462, 468
BstDSI	CCRYGG	2 cut(s)	79, 92
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	297, 507
BstMBI	GATC	2 cut(s)	294, 504
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 128, 236, 269, 281, 285, 473
BstSCI	CCNGG	1 cut(s)	521
BstV1I	GCAGC	5 cut(s)	115, 259, 322, 357, 553
BsuRI	GGCC	3 cut(s)	78, 97, 138
BtgI	CCRYGG	2 cut(s)	79, 92
Cac8I	GCNNGC	6 cut(s)	26, 168, 277, 286, 438, 474
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	2 cut(s)	122, 284
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	620
CviAII	CATG	3 cut(s)	80, 172, 398
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	2 cut(s)	462, 468
DinI	GGCGCC	1 cut(s)	289
DpnI	GATC	2 cut(s)	296, 506
DpnII	GATC	2 cut(s)	294, 504
EaeI	YGGCCR	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	79, 139
Eco147I	AGGCCT	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	440
EcoT14I	CCWWGG	2 cut(s)	79, 139
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	79, 139
FaeI	CATG	3 cut(s)	83, 175, 401
FaiI	YATR	7 cut(s)	81, 173, 399, 434, 446, 516, 644
FatI	CATG	3 cut(s)	79, 171, 397
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	289
GsuI	CTGGAG	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	78, 97, 138
HapII	CCGG	4 cut(s)	123, 220, 285, 522
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	83, 175, 401
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	2 cut(s)	58, 268
HindII	GTYRAC	2 cut(s)	58, 268
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	3 cut(s)	117, 180, 518
HpaII	CCGG	4 cut(s)	123, 220, 285, 522
Hpy166II	GTNNAC	2 cut(s)	58, 268
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	5 cut(s)	44, 177, 220, 307, 398
Hpy8I	GTNNAC	2 cut(s)	58, 268
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	220, 244
HpyCH4III	ACNGT	2 cut(s)	304, 546
HpyCH4V	TGCA	4 cut(s)	436, 476, 569, 613
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 128, 236, 269, 281, 285, 473
HpyF3I	CTNAG	2 cut(s)	462, 468
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	83, 175, 401
HspAI	GCGC	1 cut(s)	288
KasI	GGCGCC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	219
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	294, 504
Lsp1109I	GCAGC	5 cut(s)	115, 259, 322, 357, 553
LweI	GCATC	1 cut(s)	2
MaeI	CTAG	1 cut(s)	44
MalI	GATC	2 cut(s)	296, 506
MboI	GATC	2 cut(s)	294, 504
MboII	GAAGA	4 cut(s)	26, 235, 433, 580
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	2 cut(s)	480, 561
MluNI	TGGCCA	1 cut(s)	97
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	126, 189
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	55, 58, 128, 349, 370, 507, 582
Mox20I	TGGCCA	1 cut(s)	97
MroI	TCCGGA	1 cut(s)	219
MroNI	GCCGGC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	3 cut(s)	327, 549, 632
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	97
MspCI	CTTAAG	1 cut(s)	631
MspI	CCGG	4 cut(s)	123, 220, 285, 522
MspR9I	CCNGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	7 cut(s)	21, 128, 236, 269, 281, 285, 473
NaeI	GCCGGC	1 cut(s)	286
NarI	GGCGCC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	294, 504
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	83, 175, 401
NlaIV	GGNNCC	3 cut(s)	207, 231, 289
NmeAIII	GCCGAG	1 cut(s)	316
PagI	TCATGA	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	521
PleI	GAGTC	2 cut(s)	125, 188
PluTI	GGCGCC	1 cut(s)	291
PpsI	GAGTC	2 cut(s)	125, 188
PspN4I	GGNNCC	3 cut(s)	207, 231, 289
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	327, 549, 632
Sau3AI	GATC	2 cut(s)	294, 504
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	126, 189
ScrFI	CCNGG	1 cut(s)	523
SfaNI	GCATC	1 cut(s)	2
SfoI	GGCGCC	1 cut(s)	289
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	498, 631
SmoI	CTYRAG	2 cut(s)	498, 631
Sse9I	AATT	2 cut(s)	480, 561
SseBI	AGGCCT	1 cut(s)	138
SsiI	CCGC	6 cut(s)	15, 18, 21, 158, 240, 243
SspDI	GGCGCC	1 cut(s)	287
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	2 cut(s)	79, 139
TaaI	ACNGT	2 cut(s)	304, 546
TaqI	TCGA	2 cut(s)	297, 372
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	2 cut(s)	480, 561
TauI	GCSGC	5 cut(s)	18, 21, 24, 242, 245
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	3 cut(s)	327, 549, 632
Tru9I	TTAA	3 cut(s)	327, 549, 632
TseI	GCWGC	5 cut(s)	128, 272, 335, 345, 566
TspDTI	ATGAA	4 cut(s)	17, 20, 136, 531
TspGWI	ACGGA	1 cut(s)	81
Vha464I	CTTAAG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	185
XbaI	TCTAGA	1 cut(s)	43
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.