Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010986

Physical Location & Seq

Genomic Coordinates Reverse (-)

17807906 .. 17810265

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGACGATGAAGAGAGCTTTACCATCTCCTTCCTCACTGCTCTTCTTCTTTCTCCTGATAACACCACTCTTCCTCTGCCAAGAAAACAGAGTCTCTGCCTCAATGCCTCCATCTGAGTCAGAAACTCTCTTCAAGATCATGGAATCAATGTCTTCTGATCAACAATGGCGTCAATCCCACCCAAACCCTTGTGCACCTGGCTCATCTTGGCCAGGCATTGAGTGCAAAACCGGTCCAGACCACTTATCACACGTCTCTCGACTCGATTTCGGCTCTGCTCCAAACCCCTCTTGTAAATCCTCTGCTTCTTTCCCTTCTTCAATCTTCACTCTCCCTTTTCTCCAATCAGTCTTCTTCTTCAACTGCTTCACTCACTTCCCAACCACAATCATGTTCCCTATAAAACTCATCCCTAACTCTTCTCTTCAACAACTTAGCCTCAGATCAAACCCTTCTCTCTCAGGTCAAATCCCTCCTCGCATTTCTTCTCTCAAATCTTTACAAATCCTCACTCTCTCACAAAACCGATTAACCGGAGATATCCCTCCGGCGATTTTCTCATTGAAAAGCCTCGTACACCTCGATCTCAGCTACAACAAGCTCACAGGTAAAATCCCTCTGCAATTAGGGAATCTAAATAACCTCGTTGGCTTAGATTTAAGCTACAATTCTTTAACCGGTACAATCCCTCCAACGATCTCTCAACTGGGTATGCTTCAGAAACTCGACTTGAGCTCAAATTCTCTCTTCGGAAGAATCCCGGAAGGTGTAGAAAAGCTTCGTTCGTTGTCTTTCATGGCGTTGAGCAACAACAAACTAAAGGGAGCTTTTCCAAAAGGAATCTCGAACCTTCAGAGTTTGCAGTACTTCATAATGGATAATAACCCAATGTTCGTTGCTCTCCCCGTTGAATTAGGGTTTCTTCCTAAACTTCAAGAGCTCCAGCTCGAGAATTCTGGATATTCCGGCGTAATCCCGGAGAGTTACACCAAATTGACGAACCTTAGCTCGTTGTCTCTTGCTAACAACAGATTAACCGGCGAAATCCCATCAGGGTTTGAGTCTCTGCCACACGTTTTCCATCTGAATCTCAGCAGGAACTTACTGATCGGCGTTGTTCCGTTTGATTCAAGTTTCTTAAGACGGTTGGGTAAGAACTTGGATTTGAGCGGGAACAGAGGATTGTGTCTGAATCCGGAGGATGAGTTTAGTGTTGTCAAGACCGGGGTTGATGTATGCGGGAAGAACGTTAGTAGTGGTGGAGGTTTATCGGTGCATTCATCGAAGAAGAAATCTCAAGCTTCTCGGTATTACAGATCTTGCTTCTTCGCCAATGCTCTGTTTCCGTTTGCTCTGTTTCTAGGTTTACATCAACGATGGGTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0030312 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0044464 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

462

Amino Acids

50.8

Weight (kDa)

9.36

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	141 - 201	3.9e-07	Leucine rich repeat
LRR_14	PF23598	142 - 220	1.6e-06	Leucine-rich repeat region
LRR_4	PF12799	165 - 202	7.2e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	166 - 225	8.4e-09	Leucine rich repeat
LRR_14	PF23598	209 - 289	5.2e-08	Leucine-rich repeat region
LRR_8	PF13855	239 - 296	4.1e-06	Leucine rich repeat
LRR_8	PF13855	309 - 369	5.9e-09	Leucine rich repeat
LRR_8	PF13855	334 - 393	6.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42800
fragaria_vesca	FvH4_6g37770
malus_domestica	MD09G1156200.v1.1 MD17G1142500.v1.1
prunus_persica	Prupe.3G169100_v2.0.a1 Prupe.3G169100_v2.0.a1
pyrus_communis	pycom09g07500 pycom17g13570
rosa_chinensis	RchiOBHm_Chr2g0150831
rosa_laevigata	RLG00000020510
rosa_multiflora	Rmu_sc0003127.1_g000061 Rmu_sc0007617.1_g000016 Rmu_sc0024470.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096930
rosa_rugosa	Rorug02G0422600
rosa_samantha	Rh2AG482900 Rh2BG495500 Rh2CG469200 Rh2DG506300
rosa_wichuraiana	Rw2G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1170
AccIII	TCCGGA	1 cut(s)	1195
AciI	CCGC	2 cut(s)	1170, 1239
AclI	AACGTT	1 cut(s)	1248
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	739, 952
AcuI	CTGAAG	2 cut(s)	701, 836
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	3 cut(s)	576, 682, 866
AflII	CTTAAG	1 cut(s)	1138
AflIII	ACRYGT	2 cut(s)	250, 1072
AgeI	ACCGGT	2 cut(s)	230, 677
AgsI	TTSAA	8 cut(s)	133, 321, 361, 428, 565, 911, 935, 1131
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	196, 211
Alw21I	GWGCWC	3 cut(s)	196, 737, 942
Alw26I	GTCTC	4 cut(s)	97, 259, 1020, 1068
Alw44I	GTGCAC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	947
Aor13HI	TCCGGA	1 cut(s)	1195
AoxI	GGCC	1 cut(s)	209
ApaLI	GTGCAC	1 cut(s)	192
ApoI	RAATTY	2 cut(s)	739, 952
AsiGI	ACCGGT	2 cut(s)	230, 677
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	3 cut(s)	761, 977, 1225
AvaI	CYCGRG	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	737, 942
BarI	GAAGNNNNNNTAC	2 cut(s)	762, 794
BbsI	GAAGAC	2 cut(s)	144, 343
Bbv12I	GWGCWC	3 cut(s)	196, 737, 942
BccI	CCATC	5 cut(s)	31, 118, 1057, 1089, 1371
BciT130I	CCWGG	2 cut(s)	198, 213
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	3 cut(s)	761, 977, 1225
BcoDI	GTCTC	4 cut(s)	97, 259, 1020, 1068
BfaI	CTAG	1 cut(s)	1361
BfrI	CTTAAG	1 cut(s)	1138
BglII	AGATCT	1 cut(s)	1316
BmcAI	AGTACT	1 cut(s)	866
Bme1390I	CCNGG	5 cut(s)	198, 213, 761, 977, 1225
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	947
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	5 cut(s)	198, 213, 761, 977, 1225
BmrI	ACTGGG	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	144, 343
BpmI	CTGGAG	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	1004
BpuEI	CTTGAG	2 cut(s)	751, 1281
BpuMI	CCSGG	3 cut(s)	761, 977, 1225
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	1224
BsaWI	WCCGGW	4 cut(s)	230, 533, 677, 1195
BsaXI	ACNNNNNCTCC	4 cut(s)	673, 703, 1190, 1220
Bse118I	RCCGGY	3 cut(s)	230, 677, 1037
Bse1I	ACTGG	1 cut(s)	711
BseAI	TCCGGA	1 cut(s)	1195
BseBI	CCWGG	2 cut(s)	198, 213
BseDI	CCNNGG	1 cut(s)	1224
BseGI	GGATG	2 cut(s)	408, 1207
BseMII	CTCAG	5 cut(s)	105, 454, 474, 601, 1105
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	1 cut(s)	465
BseSI	GKGCMC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	211
BshTI	ACCGGT	2 cut(s)	230, 677
BsiHKAI	GWGCWC	3 cut(s)	196, 737, 942
BsiHKCI	CYCGRG	1 cut(s)	947
BsmAI	GTCTC	4 cut(s)	97, 259, 1020, 1068
BsmBI	CGTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	1276
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	947
Bsp1286I	GDGCHC	3 cut(s)	196, 737, 942
Bsp13I	TCCGGA	1 cut(s)	1195
Bsp143I	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
BspACI	CCGC	2 cut(s)	1170, 1239
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	5 cut(s)	106, 453, 473, 600, 1104
BspEI	TCCGGA	1 cut(s)	1195
BspQI	GCTCTTC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	1138
BsrBI	CCGCTC	1 cut(s)	1170
BsrFI	RCCGGY	3 cut(s)	230, 677, 1037
BsrI	ACTGG	1 cut(s)	711
BssAI	RCCGGY	3 cut(s)	230, 677, 1037
BssECI	CCNNGG	1 cut(s)	1224
BssMI	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
BssNI	GRCGYC	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	198, 213
Bst4CI	ACNGT	1 cut(s)	1146
Bst6I	CTCTTC	7 cut(s)	5, 47, 74, 134, 424, 429, 752
BstACI	GRCGYC	1 cut(s)	169
BstAFI	CTTAAG	1 cut(s)	1138
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstDEI	CTNAG	8 cut(s)	114, 434, 440, 460, 587, 652, 1004, 1091
BstF5I	GGATG	2 cut(s)	408, 1207
BstKTI	GATC	7 cut(s)	138, 160, 446, 586, 699, 1110, 1319
BstMAI	GTCTC	4 cut(s)	97, 259, 1020, 1068
BstMBI	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	2 cut(s)	198, 213
BstSCI	CCNGG	5 cut(s)	196, 211, 759, 975, 1223
BstSLI	GKGCMC	1 cut(s)	196
BstV2I	GAAGAC	2 cut(s)	144, 343
BstX2I	RGATCY	1 cut(s)	1316
BstYI	RGATCY	1 cut(s)	1316
BsuRI	GGCC	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	408, 1207
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cfr10I	RCCGGY	3 cut(s)	230, 677, 1037
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	575, 681, 865
CspAI	ACCGGT	2 cut(s)	230, 677
CviAII	CATG	3 cut(s)	139, 391, 796
CviQI	GTAC	3 cut(s)	575, 681, 865
DdeI	CTNAG	8 cut(s)	114, 434, 440, 460, 587, 652, 1004, 1091
DpnI	GATC	7 cut(s)	137, 159, 445, 585, 698, 1109, 1318
DpnII	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	7 cut(s)	5, 47, 74, 134, 424, 429, 752
EarI	CTCTTC	7 cut(s)	5, 47, 74, 134, 424, 429, 752
Ecl136II	GAGCTC	2 cut(s)	735, 940
Eco24I	GRGCYC	2 cut(s)	737, 942
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	233
Eco53kI	GAGCTC	2 cut(s)	735, 940
Eco57I	CTGAAG	2 cut(s)	701, 836
Eco88I	CYCGRG	1 cut(s)	947
EcoICRI	GAGCTC	2 cut(s)	735, 940
EcoRI	GAATTC	1 cut(s)	952
EcoRII	CCWGG	2 cut(s)	196, 211
EcoRV	GATATC	1 cut(s)	541
EcoT38I	GRGCYC	2 cut(s)	737, 942
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	3 cut(s)	142, 394, 799
FaiI	YATR	7 cut(s)	140, 392, 401, 713, 797, 872, 1237
FatI	CATG	3 cut(s)	138, 390, 795
FauI	CCCGC	2 cut(s)	1163, 1232
FbaI	TGATCA	1 cut(s)	157
FokI	GGATG	2 cut(s)	395, 1214
FriOI	GRGCYC	2 cut(s)	737, 942
FspBI	CTAG	1 cut(s)	1361
GsuI	CTGGAG	1 cut(s)	926
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	142, 394, 799
HindIII	AAGCTT	2 cut(s)	776, 1299
Hpy166II	GTNNAC	3 cut(s)	194, 577, 1367
Hpy188I	TCNGA	9 cut(s)	115, 121, 157, 443, 720, 752, 855, 1086, 1191
Hpy8I	GTNNAC	3 cut(s)	194, 577, 1367
HpyAV	CCTTC	5 cut(s)	39, 324, 462, 758, 860
HpyCH4III	ACNGT	1 cut(s)	1146
HpyCH4IV	ACGT	3 cut(s)	252, 1074, 1248
HpyCH4V	TGCA	5 cut(s)	194, 225, 622, 862, 1276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	8 cut(s)	114, 434, 440, 460, 587, 652, 1004, 1091
HpySE526I	ACGT	3 cut(s)	252, 1074, 1248
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	3 cut(s)	142, 394, 799
Kpn2I	TCCGGA	1 cut(s)	1195
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	3 cut(s)	283, 824, 945
MaeI	CTAG	1 cut(s)	1361
MaeII	ACGT	3 cut(s)	252, 1074, 1248
MaeIII	GTNAC	1 cut(s)	983
MalI	GATC	7 cut(s)	137, 159, 445, 585, 698, 1109, 1318
MbiI	CCGCTC	1 cut(s)	1170
MboI	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
MflI	RGATCY	1 cut(s)	1316
MhlI	GDGCHC	3 cut(s)	196, 737, 942
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	6 cut(s)	623, 667, 739, 911, 952, 992
MluNI	TGGCCA	1 cut(s)	211
MlyI	GAGTC	4 cut(s)	99, 125, 255, 1070
MmeI	TCCRAC	1 cut(s)	716
Mox20I	TGGCCA	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	1195
MroXI	GAANNNNTTC	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	211
MseI	TTAA	5 cut(s)	530, 659, 674, 1034, 1139
MslI	CAYNNNNRTG	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	211
MspCI	CTTAAG	1 cut(s)	1138
MspR9I	CCNGG	5 cut(s)	198, 213, 761, 977, 1225
Mva1269I	GAATGC	1 cut(s)	1276
MvaI	CCWGG	2 cut(s)	198, 213
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	3 cut(s)	761, 977, 1225
NdeII	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
NlaIII	CATG	3 cut(s)	142, 394, 799
PaeR7I	CTCGAG	1 cut(s)	947
PciSI	GCTCTTC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	1 cut(s)	1276
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	7 cut(s)	143, 631, 756, 840, 1087, 1127, 1192
PfoI	TCCNGGA	2 cut(s)	759, 975
PinAI	ACCGGT	2 cut(s)	230, 677
PleI	GAGTC	4 cut(s)	98, 124, 255, 1069
PpsI	GAGTC	4 cut(s)	98, 124, 255, 1069
Psp124BI	GAGCTC	2 cut(s)	737, 942
Psp1406I	AACGTT	1 cut(s)	1248
Psp6I	CCWGG	2 cut(s)	196, 211
PspGI	CCWGG	2 cut(s)	196, 211
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	1316
RsaI	GTAC	3 cut(s)	576, 682, 866
RsaNI	GTAC	3 cut(s)	575, 681, 865
RseI	CAYNNNNRTG	1 cut(s)	389
SacI	GAGCTC	2 cut(s)	737, 942
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	5 cut(s)	530, 659, 674, 1034, 1139
Sau3AI	GATC	7 cut(s)	135, 157, 443, 583, 696, 1107, 1316
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	866
SchI	GAGTC	4 cut(s)	99, 125, 255, 1070
ScrFI	CCNGG	5 cut(s)	198, 213, 761, 977, 1225
SduI	GDGCHC	3 cut(s)	196, 737, 942
Sfr274I	CTCGAG	1 cut(s)	947
SinI	GGWCC	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	4 cut(s)	730, 947, 1138, 1296
SmoI	CTYRAG	4 cut(s)	730, 947, 1138, 1296
Sse9I	AATT	6 cut(s)	623, 667, 739, 911, 952, 992
SsiI	CCGC	2 cut(s)	1170, 1239
SspMI	CTAG	1 cut(s)	1361
SstI	GAGCTC	2 cut(s)	737, 942
StyD4I	CCNGG	5 cut(s)	196, 211, 759, 975, 1223
TaaI	ACNGT	1 cut(s)	1146
TaiI	ACGT	3 cut(s)	255, 1077, 1251
TaqI	TCGA	7 cut(s)	259, 264, 582, 726, 845, 948, 1283
TasI	AATT	6 cut(s)	623, 667, 739, 911, 952, 992
TatI	WGTACW	1 cut(s)	864
TfiI	GAWTC	7 cut(s)	143, 631, 756, 840, 1087, 1127, 1192
Tru1I	TTAA	5 cut(s)	530, 659, 674, 1034, 1139
Tru9I	TTAA	5 cut(s)	530, 659, 674, 1034, 1139
TscAI	CASTG	1 cut(s)	42
TspDTI	ATGAA	4 cut(s)	23, 784, 859, 1269
TspGWI	ACGGA	2 cut(s)	1110, 1335
TspRI	CASTG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	1138
VneI	GTGCAC	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	2 cut(s)	739, 952
XhoI	CTCGAG	1 cut(s)	947
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	1 cut(s)	1361
ZrmI	AGTACT	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.