Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

54317252 .. 54351148

Gene Structure 33897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0422600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4407 bp

ATGGCTTCCTTGAAGAGTTCTGTACTTGGGATCACTTCTCGGATTTGTGATGGAGAATTTGATCTGGGTTCTTACTGCACTCAAACGACTATGATTAATGCAGTAAATCTTCTCTTCCTCTTTCTTTTTTGCTTATTTACTCTTATAGCTTCTTTAAGGAAGCATTATAGTAGTAGTAGTCCATCCAGAAGGGACAGATTCTCTGTAGTGGTTTCAGTCTGTTGTGCTTTTACTGGCATTGCCTATTTTGGTGCTGGATTGTGGATTCTGATAGCCAATAGTGATGATCTATCAAATTATTTTGAAAGCTGGATGGATTACCTTGTTAGAGGACTAGTTTGGATTTCCCTCACAATTTCCTTGCTTGTTCAAAGGTCTAAATGGATCAAAATTCTGAATTCTGTTTGGTGGGTGTCCTCCTTTTCATTGGTCTCGGCTGTAAACATAGAAATACTTGTAAGAACCCATAGCATTCGTATTTTCGATGTGCTAACATGGCCAGTGAGCTTCTTACTTCTATTGTGTGCTGTTAGAAACCTCAGCCACTTTCTTTATGACCAAAGCCAAGATAATAGCATATCAGAGCCTCTATTAGCCAAAAAGTCTGCTGAAAAGAGCCAGAAAACACAACTAGGCAATGCCGGTTTCCTTAGCAAATTGACATTTGCTTGGATCAATCCTTTACTCACTTTAGGCTACTCAAAAACATTAGCTCCTGAAGACATACCATCTCTGGTTTCAGAAGATGAAGCAGATTTAGCATACCAAATATTTGCTCAAGCATGGGAGTCCCTGTCAAGGGATAAGAGCTCAAGCAGTACCAGAAACCTGGTTATGAGAGCAATAGCAAAAGTTTACTTGAAAGAGAATATATGGATTGCCTTTTGTGCATTCCTCAGGACAATTGCAGTTGTAGTTTCTCCTCTTATACTCTATGCATTTGTAAATTATTCGAATGCCGAGGAGGAAAATTTTTCTCAAGGCCTCATCATAGTGGGGTGCCTAATTATCACCAAAGTAGTCGAGTCTTTCACCCAGAGACATTGGTTCTTTGACTCAAGGAGGTCTGGAATGAGAATGAGGTCGGCTTTGATGGTCGCAGTTTATCAAAAGCAGCTGAAACTCTCTAGTGTGGGAAGGAGAAGACACTCAGCTGGGGAGATAGTTAACTATATAGCAGTTGATGCTTACAGAATGGGAGAGTTCCCATGGTGGTTCCATTCAACATGGAGCTTTGCATTGCAATTAGTTCTTGCCATTGGAGTTCTTTTCGGGGTGGTGGGGGTTGGTGCTCTACCGGGTTTAATTCCTCTCCTCATTTGTGGTCTTCTAAATGTGCCTTTTGCAAAGGCGCTTCAGAAGTGTCAGTCCCAGTTCATGATGGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTACAATCCTGGGAAGAGAAATTCAAAAACTCGGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAATTTAGGAAGGCTTATGGAACTTTACTCTACTGGATGTCACCAACCATTATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATAGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCTGGAACTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGTGATAACATACTCTATGGGAAGCCAATGGACAAGAACAAATATGAGAAGACTATAAAAACTTGTGCTTTGGATAAGGACATAAATAGTTTTGACCATGGTGATCGTACTGAAATAGGCCAGAGGGGAATTAACATGAGTGGAGGGCAAAAGCAAAGGATTCAGCTGGCCCGAGCTGTCTATAGTGATGCTGATATCTACCTCCTAGATGACCCATTCAGTGCAGTAGATGCACACACTGCCGCAATTCTGTTTCATGATTGTGTCATGGATGCTCTAGCAAAGAAGACTGTGATTCTTGTGACTCATCAAGTAGAATTTCTGTCAGAAGTTGACAAAATTCTGGTAATGGAGAGCGGACAAATTACTCAATCCGGAAGCTATGAGAGTCTCTTGACTTCTGGAACAGCATTTGAGCAACTGGTGAATGCTCATAGAGATGCAGTAACTACATTAGGTCCTTCAAATAATCAAAGCCAAGTAGAACCGGAAAAGACAGATATGATCCTGCATGAGGTCTCTAATGTAACTAATCTCACTAGATACAGCAGTGAAGGGGACACTTCTGTGAAGGCTTCACCCACAGTGCAACTAACAGAAGACGAAGAAAAAGAGATTGGTGATGTTGGATGGAAGCCCTTCTGGGATTACATTTTTGTTTCCAAGGGAACACTTCTGCTAGCAATAGGCATAATGGCACAGGCTGGTTTTGTTTGTTTTCAGGCTGGTTCAACTTACTGGCTGGCTCTCGCCATTCAAAATCCTAGTATAACTAGTCTTACACTTGTCGGTGTCTATACTGCAATCTCAACACTCAGTGCTGTATTTGTCTATCTGAGGTCAACCCTTGCAGCACGTCTGGGACTAAGAGCTTCTAGAACATTTTTTGATGGTTTCACAGATGCCATCTTTAAGGCTCCCATGTTGTTCTTCGACTCAACTCCTGTTGGAAGGATTTTGACACGAGCTTCATCAGATTTAAGTATCTTGGATTTTGACATACCTTTCTCCATTATCTTTGTTGTGTCTGCTGGTATGGAATTGCTGACATGGATTGGAATAATGGCTTCTGTCACATGGCAAGTTCTCATTGTAGCCTTTCTCGCCATGGTTGCTTCAAAATATGTTCAGAGCTACTATCAAGCGTCTGCAAGGGAACTAATAAGAATCAATGGAACAACCAAAGCTCCTGTTATGAATTATGCGGCCGAGACATCACTTGGAGTGGTCACTATCAGAGCTTTTAAAATGGCTGACAAGTTCTTCCAAAAGTACCTAGAGCTAGTTGACACAGATGCAAGACTGTTCTTTCATTCGAATGCAACAATGGAGTGGTTAATTATAAGAACAGAAGCACTTCAAAATGTGACTCTTTTTGTTGCTGCTTTTCTCCTTATTTCACTTCCCAAGGGTTATGTTGCTCCAGAGCTTGTGGGGCTTTCTCTTTCTTATGCTTTGACACTAACAATGACACAAATTTTTGTGATCCGGTGGTATTGTAACTTATCAAACTACATCATCTCAGTTGAAAGGATAAAACAGTTCATGCAGATTCCACCAGAGCCTCCGGCTATTGTGGAGGACAAGAGACCACCATCTTCATGGCCTACAAAGGGTAGGATAGAGCTGCATTCTCTCAAGATAAAATATCGTCCAAATGCTCCACTAGTTCTCAAGGGAATTTCATGCACATTCAAAGAAGGGACTAGAGTAGGAGTTGTGGGAAGGACAGGAAGCGGAAAGACTACACTTATAAGTGCTTTGTTTCGGTTAGTAGAGCCAAATAGCGGTAAAATTATCATAGATGGACTTGACATCTGCTCTATGGGTCTAAAGGATTTAAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGTAGCATCAGAACCAACTTGGATCCTCTTGGCCTTTACTCCGATGATGAAATATGGAGGGCTCTAGAGAAGTGTCAGCTGAAGGCAACAGTCAGCAATCTACCTAATCTGCTAGATTCATCTGTTAGTGATGAAGGGGAAAATTGGAGTGCTGGGCAACGCCAGCTGTTTTGCCTTGGCAGAGTCCTTCTGAAGAGGAACAGAATCCTAGTGCTAGATGAGGCTACTGCTTCCATCGATTCTGCAACAGACGCCGTTCTACAAAGAATCATCAGGAAGGAATTTGCAGAATGCACAGTGATAACGGTTGCTCATAGGGTTCCAACAGTTATAGATAGTGACATGGTCATGGTCCTCTCCTATGGGAAGCTAGTGGAGTATGAAGAACCTTCAAAGCTCTTGGATACCAACTCCTACTTCTCCAAGCTTGTAGCTGAATATTGGTCAAGCTGTAGAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

1468

Amino Acids

163.88

Weight (kDa)

8.12

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	24 - 180	4.9e-11	ABCC10 N-terminal domain
ABC_membrane	PF00664	293 - 553	1.1e-21	ABC transporter transmembrane region
ABC_tran	PF00005	624 - 758	1.1e-19	ABC transporter
ABC_membrane	PF00664	931 - 1175	4.3e-23	ABC transporter transmembrane region
ABC_tran	PF00005	1243 - 1391	2.6e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3398, 3809
AccB1I	GGYRCC	1 cut(s)	999
AccBSI	CCGCTC	1 cut(s)	2412
AccIII	TCCGGA	1 cut(s)	2429
AciI	CCGC	5 cut(s)	2298, 2412, 3260, 3792, 3843
AclWI	GGATC	9 cut(s)	38, 392, 680, 1411, 1705, 2554, 3535, 3959, 3972
AcoI	YGGCCR	2 cut(s)	497, 3261
AcuI	CTGAAG	4 cut(s)	738, 1340, 4043, 4154
AcyI	GRCGYC	1 cut(s)	4194
AdeI	CACNNNGTG	1 cut(s)	2873
AfaI	GTAC	5 cut(s)	24, 820, 1633, 2164, 3329
AfiI	CCNNNNNNNGG	6 cut(s)	798, 799, 1720, 2569, 3668, 3842
AhlI	ACTAGT	3 cut(s)	334, 2828, 3721
AjiI	CACGTC	1 cut(s)	2912
AjnI	CCWGG	2 cut(s)	828, 1451
AjuI	GAANNNNNNNTTGG	4 cut(s)	2655, 2687, 4343, 4375
AleI	CACNNNNGTG	1 cut(s)	2621
Alw21I	GWGCWC	2 cut(s)	812, 1294
Alw26I	GTCTC	7 cut(s)	436, 1033, 1729, 2450, 2578, 3260, 3637
AlwI	GGATC	9 cut(s)	38, 392, 680, 1411, 1705, 2554, 3535, 3959, 3972
Ama87I	CYCGRG	1 cut(s)	2226
Aor13HI	TCCGGA	1 cut(s)	2429
AoxI	GGCC	7 cut(s)	497, 982, 2173, 2223, 3261, 3659, 3973
ApeKI	GCWGC	4 cut(s)	1114, 2906, 3437, 3682
ArsI	GACNNNNNNTTYG	2 cut(s)	1461, 1493
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	2 cut(s)	2693, 3411
AspLEI	GCGC	1 cut(s)	1354
AspS9I	GGNCC	4 cut(s)	1922, 2224, 2513, 4294
AsuC2I	CCSGG	1 cut(s)	1299
AsuHPI	GGTGA	8 cut(s)	1003, 1024, 1554, 1788, 2168, 2491, 2625, 2687
AsuII	TTCGAA	2 cut(s)	953, 3371
AsuNHI	GCTAGC	1 cut(s)	2734
AvaI	CYCGRG	1 cut(s)	2226
AvaII	GGWCC	3 cut(s)	1922, 2513, 4294
AxyI	CCTNAGG	1 cut(s)	896
BaeI	ACNNNNGTAYC	2 cut(s)	2590, 2623
BalI	TGGCCA	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	3964
BanI	GGYRCC	1 cut(s)	999
BanII	GRGCYC	2 cut(s)	812, 4006
BauI	CACGAG	1 cut(s)	3018
BbsI	GAAGAC	6 cut(s)	726, 1150, 1319, 2111, 2348, 2661
Bbv12I	GWGCWC	2 cut(s)	812, 1294
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	1126, 2918, 3424, 3669
BceAI	ACGGC	1 cut(s)	4181
BciT130I	CCWGG	2 cut(s)	830, 1453
BciVI	GTATCC	4 cut(s)	1610, 1857, 2031, 4339
BcnI	CCSGG	1 cut(s)	1299
BcoDI	GTCTC	7 cut(s)	436, 1033, 1729, 2450, 2578, 3260, 3637
BcuI	ACTAGT	3 cut(s)	334, 2828, 3721
BfmI	CTRYAG	3 cut(s)	204, 2236, 4393
BfoI	RGCGCY	1 cut(s)	1355
BfuI	GTATCC	4 cut(s)	1610, 1857, 2031, 4339
BisI	GCNGC	6 cut(s)	1115, 2298, 2907, 3261, 3438, 3683
BlpI	GCTNAGC	1 cut(s)	3908
BlsI	GCNGC	6 cut(s)	1116, 2299, 2908, 3262, 3439, 3684
BmcAI	AGTACT	1 cut(s)	1633
Bme1390I	CCNGG	3 cut(s)	830, 1299, 1453
Bme18I	GGWCC	3 cut(s)	1922, 2513, 4294
BmeT110I	CYCGRG	1 cut(s)	2226
BmgBI	CACGTC	1 cut(s)	2912
BmgT120I	GGNCC	4 cut(s)	1922, 2224, 2513, 4294
BmiI	GGNNCC	6 cut(s)	1001, 1217, 2008, 2973, 3966, 4263
BmrFI	CCNGG	3 cut(s)	830, 1299, 1453
BmrI	ACTGGG	1 cut(s)	1366
BmtI	GCTAGC	1 cut(s)	2738
BmuI	ACTGGG	1 cut(s)	1366
BpiI	GAAGAC	6 cut(s)	726, 1150, 1319, 2111, 2348, 2661
BpmI	CTGGAG	1 cut(s)	3462
Bpu10I	CCTNAGC	2 cut(s)	539, 650
Bpu1102I	GCTNAGC	1 cut(s)	3908
Bpu14I	TTCGAA	2 cut(s)	953, 3371
BpuEI	CTTGAG	8 cut(s)	762, 796, 963, 1042, 1837, 3677, 3713, 3906
BpuMI	CCSGG	1 cut(s)	1299
Bsa29I	ATCGAT	1 cut(s)	4179
BsaHI	GRCGYC	1 cut(s)	4194
BsaI	GGTCTC	4 cut(s)	436, 1729, 2578, 3637
BsaJI	CCNNGG	8 cut(s)	960, 1208, 1452, 2152, 2718, 3162, 3462, 4117
BsaWI	WCCGGW	3 cut(s)	2429, 2542, 3543
BsaXI	ACNNNNNCTCC	8 cut(s)	697, 727, 779, 809, 1662, 1692, 3226, 3256
Bsc4I	CCNNNNNNNGG	6 cut(s)	798, 799, 1720, 2569, 3668, 3842
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	7 cut(s)	238, 500, 1372, 1559, 1925, 2481, 2798
Bse21I	CCTNAGG	1 cut(s)	896
Bse3DI	GCAATG	3 cut(s)	237, 643, 1238
BseAI	TCCGGA	1 cut(s)	2429
BseBI	CCWGG	2 cut(s)	830, 1453
BseCI	ATCGAT	1 cut(s)	4179
BseDI	CCNNGG	8 cut(s)	960, 1208, 1452, 2152, 2718, 3162, 3462, 4117
BseGI	GGATG	6 cut(s)	182, 318, 1563, 2332, 2690, 3915
BseLI	CCNNNNNNNGG	6 cut(s)	798, 799, 1720, 2569, 3668, 3842
BseMI	GCAATG	3 cut(s)	237, 643, 1238
BseMII	CTCAG	9 cut(s)	553, 910, 1164, 1404, 1506, 2882, 2884, 3591, 3922
BseNI	ACTGG	7 cut(s)	238, 500, 1372, 1559, 1925, 2481, 2798
BseRI	GAGGAG	3 cut(s)	912, 977, 1304
BseX3I	CGGCCG	1 cut(s)	3261
BseXI	GCAGC	4 cut(s)	1126, 2918, 3424, 3669
BseYI	CCCAGC	2 cut(s)	1154, 4094
BsgI	GTGCAG	2 cut(s)	61, 2298
Bsh1285I	CGRYCG	1 cut(s)	3264
BshFI	GGCC	7 cut(s)	499, 984, 2175, 2225, 3263, 3661, 3975
BshNI	GGYRCC	1 cut(s)	999
BshVI	ATCGAT	1 cut(s)	4179
BsiEI	CGRYCG	1 cut(s)	3264
BsiHKAI	GWGCWC	2 cut(s)	812, 1294
BsiHKCI	CYCGRG	1 cut(s)	2226
BsiSI	CCGG	6 cut(s)	642, 1298, 2430, 2543, 3544, 3623
BslFI	GGGAC	9 cut(s)	206, 775, 1354, 1533, 1601, 2062, 2627, 2931, 3772
BslI	CCNNNNNNNGG	6 cut(s)	798, 799, 1720, 2569, 3668, 3842
BsmAI	GTCTC	7 cut(s)	436, 1033, 1729, 2450, 2578, 3260, 3637
BsmFI	GGGAC	9 cut(s)	206, 775, 1354, 1533, 1601, 2062, 2627, 2931, 3772
BsmI	GAATGC	8 cut(s)	471, 890, 961, 1630, 2488, 3379, 3685, 4238
BsnI	GGCC	7 cut(s)	499, 984, 2175, 2225, 3263, 3661, 3975
Bso31I	GGTCTC	4 cut(s)	436, 1729, 2578, 3637
BsoBI	CYCGRG	1 cut(s)	2226
Bsp119I	TTCGAA	2 cut(s)	953, 3371
Bsp1286I	GDGCHC	3 cut(s)	812, 1294, 4006
Bsp13I	TCCGGA	1 cut(s)	2429
Bsp1720I	GCTNAGC	1 cut(s)	3908
Bsp19I	CCATGG	3 cut(s)	1208, 2152, 3162
BspACI	CCGC	5 cut(s)	2298, 2412, 3260, 3792, 3843
BspANI	GGCC	7 cut(s)	499, 984, 2175, 2225, 3263, 3661, 3975
BspCNI	CTCAG	9 cut(s)	552, 909, 1163, 1405, 1507, 2883, 2883, 3590, 3921
BspDI	ATCGAT	1 cut(s)	4179
BspEI	TCCGGA	1 cut(s)	2429
BspHI	TCATGA	2 cut(s)	1377, 2311
BspLI	GGNNCC	6 cut(s)	1001, 1217, 2008, 2973, 3966, 4263
BspOI	GCTAGC	1 cut(s)	2738
BspPI	GGATC	9 cut(s)	38, 392, 680, 1411, 1705, 2554, 3535, 3959, 3972
BspT104I	TTCGAA	2 cut(s)	953, 3371
BspT107I	GGYRCC	1 cut(s)	999
BspTNI	GGTCTC	4 cut(s)	436, 1729, 2578, 3637
BsrBI	CCGCTC	1 cut(s)	2412
BsrDI	GCAATG	3 cut(s)	237, 643, 1238
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	7 cut(s)	238, 500, 1372, 1559, 1925, 2481, 2798
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	8 cut(s)	960, 1208, 1452, 2152, 2718, 3162, 3462, 4117
BssNI	GRCGYC	1 cut(s)	4194
BssSI	CACGAG	1 cut(s)	3018
BssT1I	CCWWGG	6 cut(s)	1208, 2152, 2718, 3162, 3462, 4117
Bst2BI	CACGAG	1 cut(s)	3018
Bst2UI	CCWGG	2 cut(s)	830, 1453
Bst6I	CTCTTC	5 cut(s)	8, 119, 1452, 1582, 4130
BstACI	GRCGYC	1 cut(s)	4194
BstAPI	GCANNNNNTGC	3 cut(s)	1184, 2285, 2294
BstBI	TTCGAA	2 cut(s)	953, 3371
BstC8I	GCNNGC	4 cut(s)	2223, 2736, 2799, 4106
BstDSI	CCRYGG	3 cut(s)	1208, 2152, 3162
BstENI	CCTNNNNNAGG	1 cut(s)	2567
BstF5I	GGATG	6 cut(s)	182, 318, 1563, 2332, 2690, 3915
BstH2I	RGCGCY	1 cut(s)	1355
BstHHI	GCGC	1 cut(s)	1354
BstMAI	GTCTC	7 cut(s)	436, 1033, 1729, 2450, 2578, 3260, 3637
BstMCI	CGRYCG	1 cut(s)	3264
BstNI	CCWGG	2 cut(s)	830, 1453
BstSCI	CCNGG	3 cut(s)	828, 1297, 1451
BstSFI	CTRYAG	3 cut(s)	204, 2236, 4393
BstV1I	GCAGC	4 cut(s)	1126, 2918, 3424, 3669
BstV2I	GAAGAC	6 cut(s)	726, 1150, 1319, 2111, 2348, 2661
BstX2I	RGATCY	2 cut(s)	1416, 3964
BstXI	CCANNNNNNTGG	2 cut(s)	829, 3657
BstYI	RGATCY	2 cut(s)	1416, 3964
BstZI	CGGCCG	1 cut(s)	3261
Bsu15I	ATCGAT	1 cut(s)	4179
Bsu36I	CCTNAGG	1 cut(s)	896
BsuI	GTATCC	4 cut(s)	1610, 1857, 2031, 4339
BsuRI	GGCC	7 cut(s)	499, 984, 2175, 2225, 3263, 3661, 3975
BsuTUI	ATCGAT	1 cut(s)	4179
BtgI	CCRYGG	3 cut(s)	1208, 2152, 3162
BtrI	CACGTC	1 cut(s)	2912
BtsCI	GGATG	6 cut(s)	182, 318, 1563, 2332, 2690, 3915
BtsI	GCAGTG	2 cut(s)	2292, 2611
BtsIMutI	CAGTG	7 cut(s)	507, 2281, 2292, 2611, 2646, 2878, 4245
Cac8I	GCNNGC	4 cut(s)	2223, 2736, 2799, 4106
CciI	TCATGA	2 cut(s)	1377, 2311
CfoI	GCGC	1 cut(s)	1354
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	4 cut(s)	1922, 2224, 2513, 4294
ClaI	ATCGAT	1 cut(s)	4179
CseI	GACGC	2 cut(s)	3189, 4202
CsiI	ACCWGGT	1 cut(s)	828
Csp6I	GTAC	5 cut(s)	23, 819, 1632, 2163, 3328
CviQI	GTAC	5 cut(s)	23, 819, 1632, 2163, 3328
DraI	TTTAAA	1 cut(s)	3301
DraIII	CACNNNGTG	1 cut(s)	2873
EaeI	YGGCCR	2 cut(s)	497, 3261
EagI	CGGCCG	1 cut(s)	3261
Eam1104I	CTCTTC	5 cut(s)	8, 119, 1452, 1582, 4130
EarI	CTCTTC	5 cut(s)	8, 119, 1452, 1582, 4130
Ecl136II	GAGCTC	1 cut(s)	810
EclXI	CGGCCG	1 cut(s)	3261
Eco130I	CCWWGG	6 cut(s)	1208, 2152, 2718, 3162, 3462, 4117
Eco147I	AGGCCT	1 cut(s)	984
Eco24I	GRGCYC	2 cut(s)	812, 4006
Eco31I	GGTCTC	4 cut(s)	436, 1729, 2578, 3637
Eco32I	GATATC	1 cut(s)	2251
Eco47I	GGWCC	3 cut(s)	1922, 2513, 4294
Eco52I	CGGCCG	1 cut(s)	3261
Eco53kI	GAGCTC	1 cut(s)	810
Eco57I	CTGAAG	4 cut(s)	738, 1340, 4043, 4154
Eco81I	CCTNAGG	1 cut(s)	896
Eco88I	CYCGRG	1 cut(s)	2226
EcoICRI	GAGCTC	1 cut(s)	810
EcoNI	CCTNNNNNAGG	1 cut(s)	2567
EcoO109I	RGGNCCY	1 cut(s)	2513
EcoRI	GAATTC	2 cut(s)	397, 1499
EcoRII	CCWGG	2 cut(s)	828, 1451
EcoRV	GATATC	1 cut(s)	2251
EcoT14I	CCWWGG	6 cut(s)	1208, 2152, 2718, 3162, 3462, 4117
EcoT22I	ATGCAT	1 cut(s)	940
EcoT38I	GRGCYC	2 cut(s)	812, 4006
ErhI	CCWWGG	6 cut(s)	1208, 2152, 2718, 3162, 3462, 4117
FaqI	GGGAC	9 cut(s)	206, 775, 1354, 1533, 1601, 2062, 2627, 2931, 3772
Fnu4HI	GCNGC	6 cut(s)	1115, 2298, 2907, 3261, 3438, 3683
FokI	GGATG	6 cut(s)	169, 325, 1570, 2339, 2697, 3902
FriOI	GRGCYC	2 cut(s)	812, 4006
Fsp4HI	GCNGC	6 cut(s)	1115, 2298, 2907, 3261, 3438, 3683
GlaI	GCGC	1 cut(s)	1353
GluI	GCNGC	6 cut(s)	1115, 2298, 2907, 3261, 3438, 3683
GsaI	CCCAGC	2 cut(s)	1158, 4098
GsuI	CTGGAG	1 cut(s)	3462
HaeII	RGCGCY	1 cut(s)	1355
HaeIII	GGCC	7 cut(s)	499, 984, 2175, 2225, 3263, 3661, 3975
HapII	CCGG	6 cut(s)	642, 1298, 2430, 2543, 3544, 3623
HgaI	GACGC	2 cut(s)	3189, 4202
HhaI	GCGC	1 cut(s)	1354
Hin1I	GRCGYC	1 cut(s)	4194
Hin6I	GCGC	1 cut(s)	1352
HinP1I	GCGC	1 cut(s)	1352
HincII	GTYRAC	4 cut(s)	1168, 2389, 2898, 3343
HindII	GTYRAC	4 cut(s)	1168, 2389, 2898, 3343
HindIII	AAGCTT	1 cut(s)	4367
HpaI	GTTAAC	1 cut(s)	1168
HpaII	CCGG	6 cut(s)	642, 1298, 2430, 2543, 3544, 3623
HphI	GGTGA	8 cut(s)	1003, 1024, 1554, 1788, 2168, 2491, 2625, 2687
Hpy166II	GTNNAC	8 cut(s)	442, 856, 1168, 1882, 1922, 2389, 2898, 3343
Hpy8I	GTNNAC	8 cut(s)	442, 856, 1168, 1882, 1922, 2389, 2898, 3343
HpyCH4IV	ACGT	1 cut(s)	2911
HpySE526I	ACGT	1 cut(s)	2911
Hsp92I	GRCGYC	1 cut(s)	4194
HspAI	GCGC	1 cut(s)	1352
Kpn2I	TCCGGA	1 cut(s)	2429
KspAI	GTTAAC	1 cut(s)	1168
LmnI	GCTCC	9 cut(s)	718, 1230, 1662, 1794, 1931, 2977, 3247, 3481, 3721
Lsp1109I	GCAGC	4 cut(s)	1126, 2918, 3424, 3669
MabI	ACCWGGT	1 cut(s)	828
MaeII	ACGT	1 cut(s)	2911
MbiI	CCGCTC	1 cut(s)	2412
MfeI	CAATTG	1 cut(s)	903
MflI	RGATCY	2 cut(s)	1416, 3964
MhlI	GDGCHC	3 cut(s)	812, 1294, 4006
MlsI	TGGCCA	1 cut(s)	499
MluNI	TGGCCA	1 cut(s)	499
MlyI	GAGTC	8 cut(s)	797, 1034, 1049, 2353, 2452, 2984, 3418, 4134
MmeI	TCCRAC	4 cut(s)	1909, 2662, 2983, 4289
Mox20I	TGGCCA	1 cut(s)	499
Mph1103I	ATGCAT	1 cut(s)	940
MroI	TCCGGA	1 cut(s)	2429
MroXI	GAANNNNTTC	2 cut(s)	2693, 3411
MscI	TGGCCA	1 cut(s)	499
MslI	CAYNNNNRTG	7 cut(s)	992, 2316, 2493, 2621, 3372, 3655, 4289
Msp20I	TGGCCA	1 cut(s)	499
MspA1I	CMGCKG	5 cut(s)	1117, 1154, 2221, 4021, 4108
MspI	CCGG	6 cut(s)	642, 1298, 2430, 2543, 3544, 3623
MspR9I	CCNGG	3 cut(s)	830, 1299, 1453
MunI	CAATTG	1 cut(s)	903
Mva1269I	GAATGC	8 cut(s)	471, 890, 961, 1630, 2488, 3379, 3685, 4238
MvaI	CCWGG	2 cut(s)	830, 1453
NciI	CCSGG	1 cut(s)	1299
NcoI	CCATGG	3 cut(s)	1208, 2152, 3162
NheI	GCTAGC	1 cut(s)	2734
NlaIV	GGNNCC	6 cut(s)	1001, 1217, 2008, 2973, 3966, 4263
NmeAIII	GCCGAG	3 cut(s)	413, 985, 3289
NmuCI	GTSAC	6 cut(s)	1560, 2356, 3127, 3283, 3421, 4280
NsiI	ATGCAT	1 cut(s)	940
NspV	TTCGAA	2 cut(s)	953, 3371
OliI	CACNNNNGTG	1 cut(s)	2621
PagI	TCATGA	2 cut(s)	1377, 2311
PceI	AGGCCT	1 cut(s)	984
PctI	GAATGC	8 cut(s)	471, 890, 961, 1630, 2488, 3379, 3685, 4238
PdmI	GAANNNNTTC	2 cut(s)	2693, 3411
PflFI	GACNNNGTC	1 cut(s)	4286
PkrI	GCNGC	6 cut(s)	1116, 2299, 2908, 3262, 3439, 3684
PleI	GAGTC	8 cut(s)	796, 1033, 1049, 2353, 2451, 2984, 3418, 4133
PpsI	GAGTC	8 cut(s)	796, 1033, 1049, 2353, 2451, 2984, 3418, 4133
PpuMI	RGGWCCY	1 cut(s)	2513
PshBI	ATTAAT	1 cut(s)	96
PsiI	TTATAA	2 cut(s)	3398, 3809
Psp124BI	GAGCTC	1 cut(s)	812
Psp5II	RGGWCCY	1 cut(s)	2513
Psp6I	CCWGG	2 cut(s)	828, 1451
PspFI	CCCAGC	2 cut(s)	1154, 4094
PspGI	CCWGG	2 cut(s)	828, 1451
PspN4I	GGNNCC	6 cut(s)	1001, 1217, 2008, 2973, 3966, 4263
PspPI	GGNCC	4 cut(s)	1922, 2224, 2513, 4294
PspPPI	RGGWCCY	1 cut(s)	2513
PsuI	RGATCY	2 cut(s)	1416, 3964
PsyI	GACNNNGTC	1 cut(s)	4286
PvuII	CAGCTG	5 cut(s)	1117, 1154, 2221, 4021, 4108
RsaI	GTAC	5 cut(s)	24, 820, 1633, 2164, 3329
RsaNI	GTAC	5 cut(s)	23, 819, 1632, 2163, 3328
RseI	CAYNNNNRTG	7 cut(s)	992, 2316, 2493, 2621, 3372, 3655, 4289
SacI	GAGCTC	1 cut(s)	812
SatI	GCNGC	6 cut(s)	1115, 2298, 2907, 3261, 3438, 3683
Sau96I	GGNCC	4 cut(s)	1922, 2224, 2513, 4294
ScaI	AGTACT	1 cut(s)	1633
SchI	GAGTC	8 cut(s)	797, 1034, 1049, 2353, 2452, 2984, 3418, 4134
ScrFI	CCNGG	3 cut(s)	830, 1299, 1453
SduI	GDGCHC	3 cut(s)	812, 1294, 4006
SexAI	ACCWGGT	1 cut(s)	828
SfcI	CTRYAG	3 cut(s)	204, 2236, 4393
SfuI	TTCGAA	2 cut(s)	953, 3371
SinI	GGWCC	3 cut(s)	1922, 2513, 4294
SmiMI	CAYNNNNRTG	7 cut(s)	992, 2316, 2493, 2621, 3372, 3655, 4289
SmlI	CTYRAG	8 cut(s)	777, 811, 978, 1057, 1816, 3692, 3728, 3921
SmoI	CTYRAG	8 cut(s)	777, 811, 978, 1057, 1816, 3692, 3728, 3921
SpeI	ACTAGT	3 cut(s)	334, 2828, 3721
SseBI	AGGCCT	1 cut(s)	984
SsiI	CCGC	5 cut(s)	2298, 2412, 3260, 3792, 3843
SspI	AATATT	2 cut(s)	771, 4382
SstI	GAGCTC	1 cut(s)	812
StuI	AGGCCT	1 cut(s)	984
StyD4I	CCNGG	3 cut(s)	828, 1297, 1451
StyI	CCWWGG	6 cut(s)	1208, 2152, 2718, 3162, 3462, 4117
TaiI	ACGT	1 cut(s)	2914
TaqI	TCGA	8 cut(s)	483, 953, 1023, 1489, 1995, 2988, 3371, 4179
TaqII	GACCGA	1 cut(s)	1465
TatI	WGTACW	2 cut(s)	22, 1631
TauI	GCSGC	2 cut(s)	2300, 3263
TscAI	CASTG	7 cut(s)	507, 2281, 2299, 2611, 2646, 2878, 4245
TseFI	GTSAC	6 cut(s)	1560, 2356, 3127, 3283, 3421, 4280
TseI	GCWGC	4 cut(s)	1114, 2906, 3437, 3682
Tsp45I	GTSAC	6 cut(s)	1560, 2356, 3127, 3283, 3421, 4280
TspRI	CASTG	7 cut(s)	507, 2281, 2299, 2611, 2646, 2878, 4245
Tth111I	GACNNNGTC	1 cut(s)	4286
VpaK11BI	GGWCC	3 cut(s)	1922, 2513, 4294
VspI	ATTAAT	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	2567
XbaI	TCTAGA	2 cut(s)	2930, 4006
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3654
XmnI	GAANNNNTTC	2 cut(s)	2693, 3411
ZrmI	AGTACT	1 cut(s)	1633
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.