Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8272387.1

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 817

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8272387.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgctaagtgaaattggatctgttgagaacattccagagttcattgagggtgtgaagagcaggaagcgaaagatgtcaggttttgggcatcgcgtgtacaagaactatgatcctagagcaaaggtcataagaaagctggcagatgaagtattctccattgttggaagggatccactgattgaggttgctgttgctttggagaaagctgcactatctgacgagtattttgttaagagaaagctatatcctaatgttgatttctactctgggttgatatatagggcaatgggatttccaacggagttcttcccagttttatttgcaatccctagaatggctggttacttggcacactggagagaatccctggatgatcctgatactaagattatgaggcccgcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

9.12

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	5 cut(s)	25, 104, 164, 177, 368
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	3 cut(s)	136, 206, 241
AluI	AGCT	3 cut(s)	136, 206, 241
AlwI	GGATC	5 cut(s)	25, 104, 164, 177, 368
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	206
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	368
BfaI	CTAG	2 cut(s)	114, 330
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	311, 359
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	311, 359
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	334
BsnI	GGCC	1 cut(s)	397
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	17, 109, 169, 373
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	5 cut(s)	25, 104, 164, 177, 368
BspQI	GCTCTTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	311, 359
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	4 cut(s)	17, 109, 169, 373
Bst2UI	CCWGG	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	138, 399
BstDEI	CTNAG	2 cut(s)	5, 384
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	4 cut(s)	20, 112, 172, 376
BstMBI	GATC	4 cut(s)	17, 109, 169, 373
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	2 cut(s)	17, 169
BstYI	RGATCY	2 cut(s)	17, 169
BsuRI	GGCC	1 cut(s)	397
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	173, 352
Cac8I	GCNNGC	2 cut(s)	138, 399
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	5 cut(s)	136, 206, 241, 338, 397
CviKI_1	RGCY	5 cut(s)	136, 206, 241, 338, 397
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	5, 384
DpnI	GATC	4 cut(s)	19, 111, 171, 375
DpnII	GATC	4 cut(s)	17, 109, 169, 373
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	366
FaiI	YATR	6 cut(s)	108, 128, 244, 277, 279, 392
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	114, 330
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	35, 377
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	209, 323
HpyF3I	CTNAG	2 cut(s)	5, 384
Kzo9I	GATC	4 cut(s)	17, 109, 169, 373
LguI	GCTCTTC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	114, 330
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	4 cut(s)	19, 111, 171, 375
MboI	GATC	4 cut(s)	17, 109, 169, 373
MboII	GAAGA	2 cut(s)	67, 298
MflI	RGATCY	2 cut(s)	17, 169
MluCI	AATT	1 cut(s)	12
MmeI	TCCRAC	2 cut(s)	142, 320
MnlI	CCTC	3 cut(s)	40, 175, 387
MseI	TTAA	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	93
NdeII	GATC	4 cut(s)	17, 109, 169, 373
NlaIV	GGNNCC	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	396
PsuI	RGATCY	2 cut(s)	17, 169
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	17, 109, 169, 373
Sau96I	GGNCC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	6 cut(s)	82, 126, 138, 186, 208, 243
SfaNI	GCATC	1 cut(s)	97
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	2 cut(s)	114, 330
StyD4I	CCNGG	1 cut(s)	366
TasI	AATT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	180, 359
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	31, 159
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	180, 359
XspI	CTAG	2 cut(s)	114, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.