Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

46750920 .. 46752733

Gene Structure 1814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG229100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGTCAGGTTTTGGGCATCGCGTGTACAAGAACTATGATCCTAGAGCAAAGGTCATAAGAAAGCTAGCAGATGAAGTATTCTCCATTGTTGGAAGGGATCCACTGATTGAGGTGAGTAAAGAGATGTCGGTGGAGCAAGGCTCGCTTAAGTACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

52

Amino Acids

5.98

Weight (kDa)

9.16

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	2 - 43	3.5e-12	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AclWI	GGATC	3 cut(s)	32, 92, 105
AfaI	GTAC	2 cut(s)	26, 152
AflII	CTTAAG	1 cut(s)	146
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	3 cut(s)	32, 92, 105
AsuHPI	GGTGA	1 cut(s)	124
AsuNHI	GCTAGC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	42, 65
BfrI	CTTAAG	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	25
BmtI	GCTAGC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bsh1236I	CGCG	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	37, 97
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	99
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	32, 92, 105
BspTI	CTTAAG	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	24
BssMI	GATC	2 cut(s)	37, 97
BstAFI	CTTAAG	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	66, 143
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	40, 100
BstMBI	GATC	2 cut(s)	37, 97
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	2
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	66, 143
Csp6I	GTAC	2 cut(s)	25, 151
CviJI	RGCY	2 cut(s)	64, 141
CviKI_1	RGCY	2 cut(s)	64, 141
CviQI	GTAC	2 cut(s)	25, 151
DpnI	GATC	2 cut(s)	39, 99
DpnII	GATC	2 cut(s)	37, 97
FaiI	YATR	2 cut(s)	36, 56
FalI	AAGNNNNNCTT	1 cut(s)	129
FspBI	CTAG	2 cut(s)	42, 65
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	37, 97
LmnI	GCTCC	1 cut(s)	133
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	42, 65
MalI	GATC	2 cut(s)	39, 99
MboI	GATC	2 cut(s)	37, 97
MflI	RGATCY	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	1 cut(s)	103
MseI	TTAA	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	2 cut(s)	37, 97
NheI	GCTAGC	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	26, 152
RsaNI	GTAC	2 cut(s)	25, 151
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	37, 97
SetI	ASST	4 cut(s)	10, 54, 66, 114
SfaNI	GCATC	1 cut(s)	25
SgeI	CNNG	8 cut(s)	18, 32, 34, 40, 54, 77, 149, 154
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SspMI	CTAG	2 cut(s)	42, 65
TatI	WGTACW	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	146
XspI	CTAG	2 cut(s)	42, 65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.