Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003819.1

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

14907 .. 16063

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003819.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgtttgggagagttggatgttggaaggttctctggatgagtgtaggctggttaactgtagaaatccactggggtaatagagcttataaaccaaattcccgcctcgcccaagtattgggcattctcttcatactccacgctgaacatgagatgaattgctcaacggctgctgctcggcatctggcgtcaagtggtgtggatgtttacactgccctttctggagctgttggagctctatatggtccccttcatggtggagcaaatgaggctgtgcttaagatgctaagtgaaattggatctgttgagaacattccagagttcattgagggtgtgaagagcagggcaatgggatttccaacagagttcttcccagttttatttgcaatccctagaatggctggttacttggcacactggagagaatccctggatgcccaagcagggctgttcaaaagcacaagtcatggatcagtgaatgaagaagaagctgataggattgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

167

Amino Acids

18.23

Weight (kDa)

6.14

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccB7I	CCANNNNNTGG	1 cut(s)	115
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	304, 475
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	185
AfiI	CCNNNNNNNGG	4 cut(s)	115, 251, 394, 441
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	83, 224, 233, 488
AluI	AGCT	4 cut(s)	83, 224, 233, 488
Alw21I	GWGCWC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	304, 475
ApeKI	GCWGC	2 cut(s)	167, 170
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	154, 157
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	428
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	57
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	2 cut(s)	168, 171
BlsI	GCNGC	2 cut(s)	169, 172
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	428
BmrI	ACTGGG	2 cut(s)	79, 365
BmsI	GCATC	3 cut(s)	187, 270, 421
BmuI	ACTGGG	2 cut(s)	79, 365
BpmI	CTGGAG	2 cut(s)	240, 436
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 251, 394, 441
Bse1I	ACTGG	3 cut(s)	74, 371, 419
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	4 cut(s)	23, 42, 205, 436
BseLI	CCNNNNNNNGG	4 cut(s)	115, 251, 394, 441
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	74, 371, 419
BseXI	GCAGC	2 cut(s)	154, 157
BsiHKAI	GWGCWC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	4 cut(s)	115, 251, 394, 441
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	296, 467
BspACI	CCGC	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	304, 475
BspQI	GCTCTTC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	74, 371, 419
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	2 cut(s)	296, 467
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	131, 329
BstACI	GRCGYC	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	4 cut(s)	23, 42, 205, 436
BstKTI	GATC	2 cut(s)	299, 470
BstMBI	GATC	2 cut(s)	296, 467
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 266, 280
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	154, 157
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BtsCI	GGATG	4 cut(s)	23, 42, 205, 436
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	4 cut(s)	67, 207, 412, 477
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	174
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	3 cut(s)	146, 251, 464
CviJI	RGCY	9 cut(s)	48, 83, 167, 224, 233, 269, 398, 445, 488
CviKI_1	RGCY	9 cut(s)	48, 83, 167, 224, 233, 269, 398, 445, 488
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	2 cut(s)	298, 469
DpnII	GATC	2 cut(s)	296, 467
Eam1104I	CTCTTC	2 cut(s)	131, 329
EarI	CTCTTC	2 cut(s)	131, 329
Ecl136II	GAGCTC	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	3 cut(s)	149, 254, 467
FaiI	YATR	8 cut(s)	87, 131, 147, 238, 240, 252, 465, 502
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	145, 250, 463
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	168, 171
FokI	GGATG	4 cut(s)	30, 49, 212, 443
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	2 cut(s)	168, 171
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	2 cut(s)	168, 171
GsuI	CTGGAG	2 cut(s)	240, 436
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	149, 254, 467
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	422
HpaI	GTTAAC	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	54, 205
Hpy188III	TCNNGA	3 cut(s)	34, 219, 314
Hpy8I	GTNNAC	2 cut(s)	54, 205
HpyAV	CCTTC	2 cut(s)	19, 257
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 266, 280
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	149, 254, 467
KspAI	GTTAAC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	296, 467
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	221, 230, 257
Lsp1109I	GCAGC	2 cut(s)	154, 157
LweI	GCATC	3 cut(s)	187, 270, 421
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	298, 469
MboI	GATC	2 cut(s)	296, 467
MboII	GAAGA	5 cut(s)	118, 346, 358, 491, 494
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	94, 154, 291
MmeI	TCCRAC	2 cut(s)	208, 380
MnlI	CCTC	3 cut(s)	113, 259, 319
MseI	TTAA	2 cut(s)	53, 276
MspCI	CTTAAG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	230, 266, 280
NdeII	GATC	2 cut(s)	296, 467
NlaIII	CATG	3 cut(s)	149, 254, 467
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	329
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	169, 172
PsiI	TTATAA	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	53, 276
SatI	GCNGC	2 cut(s)	168, 171
Sau3AI	GATC	2 cut(s)	296, 467
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	5 cut(s)	30, 85, 226, 235, 490
SfaNI	GCATC	3 cut(s)	187, 270, 421
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	94, 154, 291
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	3 cut(s)	94, 154, 291
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	53, 276
Tru9I	TTAA	2 cut(s)	53, 276
TscAI	CASTG	4 cut(s)	74, 214, 419, 477
TseI	GCWGC	2 cut(s)	167, 170
TspDTI	ATGAA	5 cut(s)	118, 167, 239, 310, 492
TspRI	CASTG	4 cut(s)	74, 214, 419, 477
Van91I	CCANNNNNTGG	1 cut(s)	115
Vha464I	CTTAAG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.