Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

11205626 .. 11207367

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTAGATTCCTTAGGCAATAGATCTTACAAACCCAATCCTCGACTGGCTCGAGTGCTAGATGTTCTCTTCATATTGCATGCAGAACATGAGATGAATTGCTCCACAGCTGCTGCCCGGCATCTGGCATCAAGCGGTGTCGATGTTTACACTGCTCTTGCTGGAGCTACTGGAGCTCTCTATGGCCCTCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGATGCTAAATGAGATTGGCACTGTTGAGAACATTCCAAATTTCATAGAGGGTGTGAAGAACAGGAAGCGAAAGATGTCAGGTTTTGGGCATCGCGTGTACAAAAACTACGATCGATCTAGATCAAAGGTCATAAGGAAACTGGCAGAGGAAGTATTTTCCATTGTTGGAAGGGATCCTCTGATTGAGGTAGCTGTTGCTTTGGAGAAGGCTGCACTTTCTGACGAGTATTTTGTCAAGAGAAAGCTCTATCCAAATGTTGATTTCTACTCTGGATTAATTTATAGGGCAATGGGATTTCCAACTGAGTTCTTCCCAGTTTTGTTCGCGATCCCTCGAATGGCTGGGTGGTTGGCACACTGGCGAGAATCCCTTGATGATCCTGATACTAAGATCATGAGACCCCAACAGGTGTATACTGGAAACTGGCTGCGCCACTATATCCCACCGAGAGAGCGCATAGTAACAAGTGATGCAGACAAGCTCTCTCAGGTTTCTGTATCAAATGCCTCTAGGCGTCGGCTGGCTGGATCTGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

254

Amino Acids

28.4

Weight (kDa)

9.62

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	635
AccII	CGCG	2 cut(s)	315, 548
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	5 cut(s)	389, 402, 544, 593, 757
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	124, 194, 559
AflII	CTTAAG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	110, 167, 176, 413, 466, 703
AluI	AGCT	6 cut(s)	110, 167, 176, 413, 466, 703
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	5 cut(s)	389, 402, 544, 593, 757
AlwNI	CAGNNNCTG	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	4 cut(s)	110, 113, 431, 649
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	654, 678
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	97, 100, 418, 636
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	4 cut(s)	5, 59, 339, 732
BfrI	CTTAAG	1 cut(s)	218
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	4 cut(s)	111, 114, 432, 650
BlsI	GCNGC	4 cut(s)	112, 115, 433, 651
Bme1390I	CCNGG	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	5 cut(s)	130, 137, 213, 319, 682
BmuI	ACTGGG	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	183, 192
BpuMI	CCSGG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 194, 559
Bse1I	ACTGG	7 cut(s)	51, 175, 366, 536, 584, 643, 650
Bse21I	CCTNAGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	124, 194, 559
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	516, 722
BseNI	ACTGG	7 cut(s)	51, 175, 366, 536, 584, 643, 650
BseXI	GCAGC	4 cut(s)	97, 100, 418, 636
BseYI	CCCAGC	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	2 cut(s)	315, 548
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	3 cut(s)	124, 194, 559
BsmAI	GTCTC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
Bsp68I	TCGCGA	1 cut(s)	548
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	517, 721
BspDI	ATCGAT	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	315, 548
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	5 cut(s)	389, 402, 544, 593, 757
BspTI	CTTAAG	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	7 cut(s)	51, 175, 366, 536, 584, 643, 650
BssMI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
BssNAI	GTATAC	1 cut(s)	636
BssNI	GRCGYC	1 cut(s)	736
Bst1107I	GTATAC	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	74, 195
BstACI	GRCGYC	1 cut(s)	736
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	81, 744
BstDEI	CTNAG	4 cut(s)	13, 525, 609, 708
BstFNI	CGCG	2 cut(s)	315, 548
BstHHI	GCGC	2 cut(s)	654, 678
BstKTI	GATC	9 cut(s)	26, 334, 338, 344, 397, 552, 601, 615, 752
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 209, 223
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	116
BstUI	CGCG	2 cut(s)	315, 548
BstV1I	GCAGC	4 cut(s)	97, 100, 418, 636
BstX2I	RGATCY	3 cut(s)	23, 394, 749
BstYI	RGATCY	3 cut(s)	23, 394, 749
BstZ17I	GTATAC	1 cut(s)	636
Bsu15I	ATCGAT	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	296
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	150, 240, 577
BtuMI	TCGCGA	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	81, 744
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	2 cut(s)	654, 678
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	334
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	4 cut(s)	80, 89, 194, 616
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	13, 525, 609, 708
DpnI	GATC	9 cut(s)	25, 333, 337, 343, 396, 551, 600, 614, 751
DpnII	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
Eam1104I	CTCTTC	2 cut(s)	74, 195
EarI	CTCTTC	2 cut(s)	74, 195
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	4 cut(s)	83, 92, 197, 619
FatI	CATG	4 cut(s)	79, 88, 193, 615
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	4 cut(s)	111, 114, 432, 650
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	111, 114, 432, 650
FspBI	CTAG	4 cut(s)	5, 59, 339, 732
GlaI	GCGC	2 cut(s)	653, 677
GluI	GCNGC	4 cut(s)	111, 114, 432, 650
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	2 cut(s)	183, 192
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	2 cut(s)	654, 678
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	4 cut(s)	83, 92, 197, 619
Hin6I	GCGC	2 cut(s)	652, 676
HinP1I	GCGC	2 cut(s)	652, 676
HinfI	GANTC	2 cut(s)	8, 587
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	3 cut(s)	148, 319, 636
Hpy188I	TCNGA	2 cut(s)	402, 442
Hpy188III	TCNNGA	7 cut(s)	339, 457, 492, 547, 602, 616, 753
Hpy8I	GTNNAC	3 cut(s)	148, 319, 636
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	384, 421
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	79, 83, 434, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 209, 223
HpyF3I	CTNAG	4 cut(s)	13, 525, 609, 708
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	4 cut(s)	83, 92, 197, 619
HspAI	GCGC	2 cut(s)	652, 676
Kzo9I	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
LmnI	GCTCC	4 cut(s)	107, 164, 173, 200
Lsp1109I	GCAGC	4 cut(s)	97, 100, 418, 636
LweI	GCATC	5 cut(s)	130, 137, 213, 319, 682
MaeI	CTAG	4 cut(s)	5, 59, 339, 732
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	9 cut(s)	25, 333, 337, 343, 396, 551, 600, 614, 751
MboI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
MboII	GAAGA	4 cut(s)	61, 182, 289, 523
MflI	RGATCY	3 cut(s)	23, 394, 749
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	97, 259, 498
MmeI	TCCRAC	2 cut(s)	367, 545
MnlI	CCTC	9 cut(s)	51, 198, 202, 262, 361, 400, 408, 564, 739
MseI	TTAA	2 cut(s)	219, 497
MspA1I	CMGCKG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	118
MvnI	CGCG	2 cut(s)	315, 548
MwoI	GCNNNNNNNGC	3 cut(s)	173, 209, 223
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
NlaIII	CATG	4 cut(s)	83, 92, 197, 619
NlaIV	GGNNCC	1 cut(s)	396
NruI	TCGCGA	1 cut(s)	548
NspI	RCATGY	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	51
PagI	TCATGA	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	8, 587
PkrI	GCNGC	4 cut(s)	112, 115, 433, 651
Ple19I	CGATCG	1 cut(s)	334
PshBI	ATTAAT	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	185
PspXI	VCTCGAGB	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	23, 394, 749
PvuI	CGATCG	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	110
RruI	TCGCGA	1 cut(s)	548
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	219, 497
SatI	GCNGC	4 cut(s)	111, 114, 432, 650
Sau3AI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	5 cut(s)	130, 137, 213, 319, 682
Sfr274I	CTCGAG	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	51, 218
SmoI	CTYRAG	2 cut(s)	51, 218
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	3 cut(s)	97, 259, 498
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	4 cut(s)	5, 59, 339, 732
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	5 cut(s)	43, 52, 141, 334, 556
TasI	AATT	3 cut(s)	97, 259, 498
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	8, 587
Tru1I	TTAA	2 cut(s)	219, 497
Tru9I	TTAA	2 cut(s)	219, 497
TscAI	CASTG	3 cut(s)	157, 247, 584
TseI	GCWGC	4 cut(s)	110, 113, 431, 649
TspDTI	ATGAA	4 cut(s)	61, 110, 182, 253
TspRI	CASTG	3 cut(s)	157, 247, 584
Vha464I	CTTAAG	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	497
XapI	RAATTY	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	338
XceI	RCATGY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	635
XspI	CTAG	4 cut(s)	5, 59, 339, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.