Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

11203482 .. 11205565

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13590.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCGAGGGTGACGGAATTTCCGGTGACAGCTCGCGGTCGCTTGGCTGTGCTCTCAGCCCACCTGGCAGCTGCGACCATCGAGCCCTCTGAGCTCGGACCCTCTCTCGAGCCGCACTGCGCGTCCGCTCACGTCCCACCGCCCGGGAACCTCCGGGGACCTTTGACCATCGTCGACGAGAGGACCGGTAAGAGGTATCAGGTCCAGGTCTCTGAGGAAGGAACCGTCAAAGCCATCGATCTCAAGAAGATCACAACAGGCAAAAATGACAAGGGGCTGAAGGTGTATGATCCAGGCTATCTTAATACCGCCCCTGTTCGATCCTCGATTTGTTATATCGATGGCGACGAGGGGATTCTTAGATATAGAGGCTACCCAATAGAGGAATTGGCTGAGAGTAGTACCTTTTTGGAAGTGGCCTATCTCTTGATGTATGGGAATTTGCCTTCTGAAAGTCAATATGCGGATTGGGAATTTGCCGTTTCTCAGCATTCAGCTGTACCACAGGGAATTTTGGACATTATACAGGCAATACCTCATGATGCACATCCAATGGGCGTACTTGTCAGTGCCATGAGTGCGCTTTCTGTTTTCCATCCTGATGCTAATCCTGCTCTCCGTGGGCAAGAAATTTACAAATCGAAACAAGTGAGAGACAAGCAAATAGCACGCATCCTTGGGAAGGCACCAACCATTGCAGCTGCAGCTTATTTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

240

Amino Acids

25.95

Weight (kDa)

6.38

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	36, 122
AciI	CCGC	6 cut(s)	36, 113, 126, 140, 309, 464
AclWI	GGATC	2 cut(s)	284, 315
AcsI	RAATTY	5 cut(s)	17, 439, 473, 510, 630
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	403, 501, 561
AfiI	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
AgeI	ACCGGT	1 cut(s)	185
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	63, 204, 292
AluBI	AGCT	6 cut(s)	32, 71, 94, 497, 701, 707
AluI	AGCT	6 cut(s)	32, 71, 94, 497, 701, 707
Alw21I	GWGCWC	2 cut(s)	54, 96
Alw26I	GTCTC	2 cut(s)	214, 648
AlwI	GGATC	2 cut(s)	284, 315
Ama87I	CYCGRG	2 cut(s)	107, 143
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	5 cut(s)	68, 71, 698, 701, 704
ApoI	RAATTY	5 cut(s)	17, 439, 473, 510, 630
AsiGI	ACCGGT	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	122, 583
AspS9I	GGNCC	4 cut(s)	98, 158, 183, 202
AsuC2I	CCSGG	3 cut(s)	144, 145, 155
AsuHPI	GGTGA	2 cut(s)	22, 37
AvaI	CYCGRG	2 cut(s)	107, 143
AvaII	GGWCC	4 cut(s)	98, 158, 183, 202
BanI	GGYRCC	1 cut(s)	685
BanII	GRGCYC	2 cut(s)	87, 96
Bbv12I	GWGCWC	2 cut(s)	54, 96
BbvI	GCAGC	5 cut(s)	58, 80, 688, 710, 716
BccI	CCATC	5 cut(s)	86, 176, 242, 335, 603
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	3 cut(s)	65, 206, 294
BcnI	CCSGG	3 cut(s)	144, 145, 155
BcoDI	GTCTC	2 cut(s)	214, 648
BfmI	CTRYAG	1 cut(s)	702
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
BlsI	GCNGC	6 cut(s)	70, 73, 114, 700, 703, 706
Bme1390I	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
Bme18I	GGWCC	4 cut(s)	98, 158, 183, 202
BmeT110I	CYCGRG	2 cut(s)	107, 143
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	98, 158, 183, 202
BmiI	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
BmrFI	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
BmsI	GCATC	3 cut(s)	532, 592, 681
BoxI	GACNNNNGTC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	3 cut(s)	144, 145, 155
Bsa29I	ATCGAT	2 cut(s)	237, 339
BsaBI	GATNNNNATC	2 cut(s)	546, 606
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	4 cut(s)	143, 154, 619, 676
BsaWI	WCCGGW	2 cut(s)	22, 185
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
Bse118I	RCCGGY	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	2 cut(s)	546, 606
BseBI	CCWGG	3 cut(s)	65, 206, 294
BseCI	ATCGAT	2 cut(s)	237, 339
BseDI	CCNNGG	4 cut(s)	143, 154, 619, 676
BseGI	GGATG	3 cut(s)	547, 595, 672
BseJI	GATNNNNATC	2 cut(s)	546, 606
BseLI	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	5 cut(s)	69, 81, 204, 384, 500
BseXI	GCAGC	5 cut(s)	58, 80, 688, 710, 716
Bsh1236I	CGCG	2 cut(s)	36, 122
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	685
BshTI	ACCGGT	1 cut(s)	185
BshVI	ATCGAT	2 cut(s)	237, 339
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	54, 96
BsiHKCI	CYCGRG	2 cut(s)	107, 143
BsiSI	CCGG	4 cut(s)	23, 144, 154, 186
BslFI	GGGAC	2 cut(s)	119, 171
BslI	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
BsmAI	GTCTC	2 cut(s)	214, 648
BsmFI	GGGAC	2 cut(s)	119, 171
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	2 cut(s)	107, 143
Bsp1286I	GDGCHC	3 cut(s)	54, 87, 96
Bsp143I	GATC	4 cut(s)	238, 249, 289, 320
BspACI	CCGC	6 cut(s)	36, 113, 126, 140, 309, 464
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	5 cut(s)	68, 82, 205, 385, 499
BspDI	ATCGAT	2 cut(s)	237, 339
BspFNI	CGCG	2 cut(s)	36, 122
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	2 cut(s)	284, 315
BspT107I	GGYRCC	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	143, 154, 619, 676
BssMI	GATC	4 cut(s)	238, 249, 289, 320
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	3 cut(s)	65, 206, 294
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	34, 670
BstDEI	CTNAG	6 cut(s)	55, 90, 213, 359, 393, 486
BstDSI	CCRYGG	1 cut(s)	619
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	547, 595, 672
BstFNI	CGCG	2 cut(s)	36, 122
BstHHI	GCGC	2 cut(s)	122, 583
BstKTI	GATC	4 cut(s)	241, 252, 292, 323
BstMAI	GTCTC	2 cut(s)	214, 648
BstMBI	GATC	4 cut(s)	238, 249, 289, 320
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 91, 578, 611, 704
BstNI	CCWGG	3 cut(s)	65, 206, 294
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	6 cut(s)	63, 142, 143, 153, 204, 292
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	2 cut(s)	36, 122
BstV1I	GCAGC	5 cut(s)	58, 80, 688, 710, 716
Bsu15I	ATCGAT	2 cut(s)	237, 339
BsuRI	GGCC	1 cut(s)	419
BsuTUI	ATCGAT	2 cut(s)	237, 339
BtgI	CCRYGG	1 cut(s)	619
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	547, 595, 672
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 574
Cac8I	GCNNGC	2 cut(s)	34, 670
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	2 cut(s)	122, 583
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	98, 158, 183, 202
Cfr9I	CCCGGG	1 cut(s)	143
ClaI	ATCGAT	2 cut(s)	237, 339
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	402, 500, 560
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	2 cut(s)	539, 574
CviQI	GTAC	3 cut(s)	402, 500, 560
DdeI	CTNAG	6 cut(s)	55, 90, 213, 359, 393, 486
DpnI	GATC	4 cut(s)	240, 251, 291, 322
DpnII	GATC	4 cut(s)	238, 249, 289, 320
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	2 cut(s)	87, 96
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	4 cut(s)	98, 158, 183, 202
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	2 cut(s)	107, 143
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	63, 204, 292
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	87, 96
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	2 cut(s)	542, 577
FaiI	YATR	8 cut(s)	288, 336, 366, 435, 462, 524, 540, 575
FaqI	GGGAC	2 cut(s)	119, 171
FatI	CATG	2 cut(s)	538, 573
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
FokI	GGATG	3 cut(s)	534, 582, 659
FriOI	GRGCYC	2 cut(s)	87, 96
Fsp4HI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
GlaI	GCGC	2 cut(s)	121, 582
GluI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	4 cut(s)	23, 144, 154, 186
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	122, 583
Hin1II	CATG	2 cut(s)	542, 577
Hin6I	GCGC	2 cut(s)	120, 581
HinP1I	GCGC	2 cut(s)	120, 581
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	4 cut(s)	23, 144, 154, 186
HphI	GGTGA	2 cut(s)	22, 37
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	4 cut(s)	91, 98, 214, 451
Hpy188III	TCNNGA	5 cut(s)	107, 244, 427, 539, 599
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	176, 179, 350
HpyAV	CCTTC	4 cut(s)	212, 274, 456, 676
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	545, 698, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 91, 578, 611, 704
HpyF3I	CTNAG	6 cut(s)	55, 90, 213, 359, 393, 486
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	542, 577
HspAI	GCGC	2 cut(s)	120, 581
Kzo9I	GATC	4 cut(s)	238, 249, 289, 320
Lsp1109I	GCAGC	5 cut(s)	58, 80, 688, 710, 716
LweI	GCATC	3 cut(s)	532, 592, 681
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	10, 25
MalI	GATC	4 cut(s)	240, 251, 291, 322
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	4 cut(s)	238, 249, 289, 320
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	54, 87, 96
MluCI	AATT	6 cut(s)	17, 386, 439, 473, 510, 630
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	3 cut(s)	71, 497, 701
MspI	CCGG	4 cut(s)	23, 144, 154, 186
MspR9I	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	3 cut(s)	65, 206, 294
MvnI	CGCG	2 cut(s)	36, 122
MwoI	GCNNNNNNNGC	5 cut(s)	65, 91, 578, 611, 704
NciI	CCSGG	3 cut(s)	144, 145, 155
NdeII	GATC	4 cut(s)	238, 249, 289, 320
NlaIII	CATG	2 cut(s)	542, 577
NlaIV	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
NmuCI	GTSAC	2 cut(s)	10, 25
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	6 cut(s)	70, 73, 114, 700, 703, 706
PpuMI	RGGWCCY	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	63, 204, 292
PspGI	CCWGG	3 cut(s)	63, 204, 292
PspN4I	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
PspPI	GGNCC	4 cut(s)	98, 158, 183, 202
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	706
PvuII	CAGCTG	3 cut(s)	71, 497, 701
RsaI	GTAC	3 cut(s)	403, 501, 561
RsaNI	GTAC	3 cut(s)	402, 500, 560
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
Sau3AI	GATC	4 cut(s)	238, 249, 289, 320
Sau96I	GGNCC	4 cut(s)	98, 158, 183, 202
ScrFI	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
SduI	GDGCHC	3 cut(s)	54, 87, 96
SfaNI	GCATC	3 cut(s)	532, 592, 681
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	107
SgrDI	CGTCGACG	1 cut(s)	173
SinI	GGWCC	4 cut(s)	98, 158, 183, 202
SlaI	CTCGAG	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	2 cut(s)	107, 242
SmoI	CTYRAG	2 cut(s)	107, 242
Sse9I	AATT	6 cut(s)	17, 386, 439, 473, 510, 630
SsiI	CCGC	6 cut(s)	36, 113, 126, 140, 309, 464
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	6 cut(s)	63, 142, 143, 153, 204, 292
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	9 cut(s)	5, 81, 108, 174, 237, 319, 326, 339, 641
TasI	AATT	6 cut(s)	17, 386, 439, 473, 510, 630
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	122, 574
TseFI	GTSAC	2 cut(s)	10, 25
TseI	GCWGC	5 cut(s)	68, 71, 698, 701, 704
Tsp45I	GTSAC	2 cut(s)	10, 25
TspGWI	ACGGA	2 cut(s)	29, 608
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	2 cut(s)	122, 574
VpaK11BI	GGWCC	4 cut(s)	98, 158, 183, 202
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	5 cut(s)	17, 439, 473, 510, 630
XhoI	CTCGAG	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.