Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

57850987 .. 57851573

Gene Structure 587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCTAGACTCCTTTGGTGTGGATGTTTACACTGCCCTTTCTGGAGCTGTTGGAGCTCTATATGGTCCCCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGATGCTAAGTGAAACTGGATCTGTTGAGAACATTCCAGAGTTCATTGAGGGTGTGAAGAGCAAGTATATATGCTTACAGCTAACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

63

Amino Acids

6.56

Weight (kDa)

4.49

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	4 - 54	7.7e-16	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflII	CTTAAG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	47, 56, 181
AluI	AGCT	3 cut(s)	47, 56, 181
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	5
BfrI	CTTAAG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	121, 190
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	121, 190
BsiHKAI	GWGCWC	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	121, 190
BssMI	GATC	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 89, 103
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	4 cut(s)	47, 56, 92, 181
CviKI_1	RGCY	4 cut(s)	47, 56, 92, 181
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	1 cut(s)	77
FaiI	YATR	6 cut(s)	61, 63, 75, 168, 170, 172
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	1 cut(s)	73
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	42, 137
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 89, 103
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	119
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	3 cut(s)	44, 53, 80
LpnPI	CCDG	4 cut(s)	27, 102, 150, 171
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	5
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	82, 142
MseI	TTAA	2 cut(s)	99, 190
MspCI	CTTAAG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	53, 89, 103
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Psp124BI	GAGCTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	99, 190
Sau3AI	GATC	1 cut(s)	119
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	3 cut(s)	49, 58, 183
SfaNI	GCATC	1 cut(s)	93
SgeI	CNNG	6 cut(s)	17, 54, 86, 129, 149, 175
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	99, 190
Tru9I	TTAA	2 cut(s)	99, 190
TscAI	CASTG	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	62, 133
TspRI	CASTG	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	65
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.