Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

65782213 .. 65790385

Gene Structure 8173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGTCGAGTGAATTTCCGGTAAGAGCTCGTGGCCGCTTGGCCGTGCTTTCGGCCCATCTCGCCGCCGCAACCATCTCCGAGTCCTCGGAGCTCGAGCCTCAGTGCTTGTCGGCCCAGGTCCCACCTCCTGGGAACCTCCGCGGCGCTTTGACCGTCGTTGACGAGAGGACCGGTAAGCGGTACCAGGTCCAGGTCTCCGAACAAGGAACCGTCAAGGCCACTGATCTCAAAAAGATTAGTACGGGGAAGAATGACAAGGGGCTGAAGCTGTATGATCCGGGGTATCTCAACACTGCGCCGGTTCGATCTTCGATTTGTTATATTGATGGAGATGAGGGGATTCTTAGGTACAGAGGGTATCCAATTGAGGAATTGGCTGAGAGTAGTACTTATTTGGAAGTGGCATATCTCCTCATGTATGGGAATTTGCCTTCTCAAAGCCAATTAGCGGATTGGGAATTCGCTGTTACTCAGCATTCAGCTGTGCCGCAGGGGATTTTGGATATTATACAAGCAATACCTCATGATGCACATCCAATGGGTGTACTTGTCAGCGCAATGAGTGCTCTTTCTGTTTTTCACCCTGATGCCAATCCTGCCCTCAGAGGGCAAGACCTTTACCAGTCCAAACAAGTAAGAGACAAACAAATTGCACGGATTCTTGGGAAGGCACCAACTATTGCAGCAGCAGCTTATTTGAGATTGGCAGGAAGACCCCCAGTTCTCCCATCTAACAACCTTTCTTATTCCGAGAACTTCTTATACATGCTAGACTCCTTGGGCAATAGAGCTTATAAACCAAATCCCCGCCTCGCCCGAGTATTGGACATTCTGTTCATACTCCACGCTGAACATGAGATGAATTGCTCAACGGCTGCTGCTCGGCATCTGGCGTCAAGTGGTGTGGATGTTTACACTGCCCTTTCTGGAGCTGTTGGAGCTCTATATGGTCCCCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGATGCTAAGTGAAATTGGATCTGTTGAGAACATTCCAGAGTTCATTGAGGGTGTGAAGAGCAGGAAGCGAAAGATGTCAGGTTTTGGGCATCGCGTGTACAAGAACTATGATCCTAGAGCAAAGGTCATAAGAAAGCTGGCAGATGAAGTATTCTCCATTGTTGGAAGGGATCCACTGATTGAGGTTGCTGTTGCTTTGGAGAAAGCTGCACTATCTGATGAGTATTTTGTTAAGAGAAAGCTGTATCCTAATGTTGATTTCTACTCTGGGTTGATATATAGGGCAATGGGATTTCCAACGGAGTTCTTCCCAGTTTTATTTGCAATCCCTAGAATGGCTGGTTACTTGGCACACTGGAGAGAATCCCTGGATGATCCTGATACTAAGATTATGAGGCCCGCACAGGTATATGTTGGGGAGTGGCTGCGGCACTATATGCCATTGAAAGAACGGATGGTGATTACCGAGTACCCAATCCGATCACACCAGATCTTTGAAAACATGTCTGGGCAAAGCCAGCGTTTGAATGTGGTTCCTACTGTTACAATGCTTGGAATTATGAAAGCTCGTCTTGTTGGTGCGACGAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTCTAACTGTTCAGTTTCGTGCCATTCTTAAAAAGATTGTGTCAACCAAAGAATCAATGGGAGATATTATGAAAACCTCCTCCTTCGCCCTTACTGAAGCCAAGTATGTTGCTGGTGAGAACATCAAACACATTGTTCTCGAGAATGTCAACACTGCCTCTCTTAAAGTTCGATCAAAGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAATTTGAATACTTTACTGAAGGTGAGACCAAGAACGACCTCACTGGATTGGCCAGAGGTGGACAACAGGTTCAACTGTGCAAGGCTGCTTATGTGAAAGCAATTGAGGTTCTTGTGGAGCTTGCTTCACTTCAAACATCATTTTTAACCCTTGATGAGGCTATCAAGAGCACAAATCGCAGGGTCAATGCTCTGGAGAATGTGGTGAAGCCTAGGTTGGAGAATACAATAACTTATATCAAGGGGGAGTTGGATGAGCTGGAAAGGGAGGACTTCTTCAGGTTAAAGAAGATACAGGGATTTAAGAAGAGGGAAATTGAGAGACAGATGGCAGCTGCTAAGAACTTCTCGGATGACCAGGCTGCAGAAGTTATTTCTTTAAAGAAGGGTATTTCACTAAATTCAGCTCAAAATTTGTTGTCTGGAGGTATGGGAAAGGACGAGGATATCATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

758

Amino Acids

83.91

Weight (kDa)

9.08

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	94 - 463	1.7e-134	Citrate synthase, C-terminal domain
ATP-synt_D	PF01813	513 - 704	7e-67	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	2 cut(s)	180, 670
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccII	CGCG	2 cut(s)	141, 1080
AclWI	GGATC	6 cut(s)	269, 1012, 1091, 1151, 1164, 1355
AcoI	YGGCCR	3 cut(s)	31, 39, 1866
AcsI	RAATTY	6 cut(s)	11, 424, 458, 1817, 2215, 2227
AcuI	CTGAAG	4 cut(s)	284, 1722, 1854, 2077
AcyI	GRCGYC	1 cut(s)	893
AfaI	GTAC	7 cut(s)	182, 241, 350, 388, 546, 1085, 1457
AfiI	CCNNNNNNNGG	9 cut(s)	128, 177, 190, 448, 606, 823, 959, 1321, 1972
AflII	CTTAAG	1 cut(s)	983
AflIII	ACRYGT	1 cut(s)	1488
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	1432, 1484, 1513, 1823, 1889, 1949
AhdI	GACNNNNNGTC	1 cut(s)	1575
AjnI	CCWGG	6 cut(s)	114, 127, 183, 189, 1353, 2172
AjuI	GAANNNNNNNTTGG	2 cut(s)	2015, 2047
AloI	GAACNNNNNNTCC	4 cut(s)	818, 850, 1869, 1901
Alw21I	GWGCWC	5 cut(s)	28, 93, 568, 943, 1988
Alw26I	GTCTC	4 cut(s)	199, 633, 1835, 2131
AlwI	GGATC	6 cut(s)	269, 1012, 1091, 1151, 1164, 1355
Ama87I	CYCGRG	3 cut(s)	92, 816, 1745
AoxI	GGCC	7 cut(s)	31, 39, 51, 111, 216, 1382, 1866
ApoI	RAATTY	6 cut(s)	11, 424, 458, 1817, 2215, 2227
AsiGI	ACCGGT	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	2027
AspLEI	GCGC	3 cut(s)	146, 298, 557
AspS9I	GGNCC	7 cut(s)	52, 112, 118, 168, 187, 950, 1383
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	5 cut(s)	572, 1456, 1733, 1850, 2032
AvaI	CYCGRG	3 cut(s)	92, 816, 1745
AvaII	GGWCC	4 cut(s)	118, 168, 187, 950
AvrII	CCTAGG	1 cut(s)	2027
BalI	TGGCCA	1 cut(s)	1868
BamHI	GGATCC	1 cut(s)	1156
BanI	GGYRCC	2 cut(s)	180, 670
BanII	GRGCYC	3 cut(s)	28, 93, 943
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	718
Bbv12I	GWGCWC	5 cut(s)	28, 93, 568, 943, 1988
BccI	CCATC	6 cut(s)	63, 80, 320, 736, 1435, 2137
BceAI	ACGGC	2 cut(s)	26, 888
BciT130I	CCWGG	6 cut(s)	116, 129, 185, 191, 1355, 2174
BciVI	GTATCC	2 cut(s)	369, 1242
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	4 cut(s)	199, 633, 1835, 2131
BfaI	CTAG	4 cut(s)	770, 1101, 1317, 2028
BfmI	CTRYAG	1 cut(s)	2178
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	983
BfuI	GTATCC	2 cut(s)	369, 1242
BglII	AGATCT	1 cut(s)	1476
BlnI	CCTAGG	1 cut(s)	2027
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	7 cut(s)	116, 129, 185, 191, 279, 1355, 2174
Bme18I	GGWCC	4 cut(s)	118, 168, 187, 950
BmeRI	GACNNNNNGTC	1 cut(s)	1575
BmeT110I	CYCGRG	3 cut(s)	92, 816, 1745
BmgT120I	GGNCC	7 cut(s)	52, 112, 118, 168, 187, 950, 1383
BmiI	GGNNCC	8 cut(s)	120, 134, 182, 208, 672, 952, 1158, 1521
BmrFI	CCNGG	7 cut(s)	116, 129, 185, 191, 279, 1355, 2174
BmrI	ACTGGG	2 cut(s)	713, 1292
BmsI	GCATC	6 cut(s)	517, 577, 895, 978, 1084, 1594
BmuI	ACTGGG	2 cut(s)	713, 1292
BpiI	GAAGAC	1 cut(s)	718
BplI	GAGNNNNNCTC	2 cut(s)	1591, 1623
BpmI	CTGGAG	4 cut(s)	948, 1363, 2030, 2259
BpuEI	CTTGAG	1 cut(s)	1574
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	2 cut(s)	531, 591
BsaHI	GRCGYC	1 cut(s)	893
BsaI	GGTCTC	2 cut(s)	199, 1835
BsaJI	CCNNGG	8 cut(s)	84, 114, 128, 139, 278, 777, 1353, 2027
BsaWI	WCCGGW	2 cut(s)	16, 170
Bsc4I	CCNNNNNNNGG	9 cut(s)	128, 177, 190, 448, 606, 823, 959, 1321, 1972
Bse118I	RCCGGY	2 cut(s)	170, 298
Bse1I	ACTGG	5 cut(s)	622, 719, 1298, 1346, 1864
Bse3DI	GCAATG	2 cut(s)	564, 1278
Bse8I	GATNNNNATC	2 cut(s)	531, 591
BseBI	CCWGG	6 cut(s)	116, 129, 185, 191, 1355, 2174
BseDI	CCNNGG	8 cut(s)	84, 114, 128, 139, 278, 777, 1353, 2027
BseGI	GGATG	6 cut(s)	532, 913, 1363, 1446, 2074, 2173
BseJI	GATNNNNATC	2 cut(s)	531, 591
BseLI	CCNNNNNNNGG	9 cut(s)	128, 177, 190, 448, 606, 823, 959, 1321, 1972
BseMI	GCAATG	2 cut(s)	564, 1278
BseMII	CTCAG	4 cut(s)	113, 369, 485, 616
BseNI	ACTGG	5 cut(s)	622, 719, 1298, 1346, 1864
BseRI	GAGGAG	3 cut(s)	401, 1577, 1675
BsgI	GTGCAG	1 cut(s)	1179
Bsh1236I	CGCG	2 cut(s)	141, 1080
BshFI	GGCC	7 cut(s)	33, 41, 53, 113, 218, 1384, 1868
BshNI	GGYRCC	2 cut(s)	180, 670
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	5 cut(s)	28, 93, 568, 943, 1988
BsiHKCI	CYCGRG	3 cut(s)	92, 816, 1745
BsiSI	CCGG	4 cut(s)	17, 171, 278, 299
BslFI	GGGAC	2 cut(s)	104, 936
BslI	CCNNNNNNNGG	9 cut(s)	128, 177, 190, 448, 606, 823, 959, 1321, 1972
BsmAI	GTCTC	4 cut(s)	199, 633, 1835, 2131
BsmFI	GGGAC	2 cut(s)	104, 936
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	7 cut(s)	33, 41, 53, 113, 218, 1384, 1868
Bso31I	GGTCTC	2 cut(s)	199, 1835
BsoBI	CYCGRG	3 cut(s)	92, 816, 1745
Bsp1286I	GDGCHC	5 cut(s)	28, 93, 568, 943, 1988
Bsp1407I	TGTACA	1 cut(s)	1083
BspANI	GGCC	7 cut(s)	33, 41, 53, 113, 218, 1384, 1868
BspCNI	CTCAG	4 cut(s)	112, 370, 484, 615
BspFNI	CGCG	2 cut(s)	141, 1080
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	8 cut(s)	120, 134, 182, 208, 672, 952, 1158, 1521
BspMAI	CTGCAG	1 cut(s)	2182
BspPI	GGATC	6 cut(s)	269, 1012, 1091, 1151, 1164, 1355
BspQI	GCTCTTC	1 cut(s)	1037
BspT107I	GGYRCC	2 cut(s)	180, 670
BspTI	CTTAAG	1 cut(s)	983
BspTNI	GGTCTC	2 cut(s)	199, 1835
BsrDI	GCAATG	2 cut(s)	564, 1278
BsrFI	RCCGGY	2 cut(s)	170, 298
BsrGI	TGTACA	1 cut(s)	1083
BsrI	ACTGG	5 cut(s)	622, 719, 1298, 1346, 1864
BssAI	RCCGGY	2 cut(s)	170, 298
BssECI	CCNNGG	8 cut(s)	84, 114, 128, 139, 278, 777, 1353, 2027
BssNI	GRCGYC	1 cut(s)	893
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	777, 2027
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	6 cut(s)	116, 129, 185, 191, 1355, 2174
Bst4CI	ACNGT	5 cut(s)	154, 211, 1528, 1615, 1893
Bst6I	CTCTTC	3 cut(s)	1037, 1592, 2117
BstACI	GRCGYC	1 cut(s)	893
BstAFI	CTTAAG	1 cut(s)	983
BstAPI	GCANNNNNTGC	2 cut(s)	563, 1423
BstAUI	TGTACA	1 cut(s)	1083
BstC8I	GCNNGC	4 cut(s)	1125, 1386, 1505, 1938
BstDEI	CTNAG	8 cut(s)	99, 344, 378, 471, 602, 992, 1371, 2154
BstDSI	CCRYGG	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	1970
BstF5I	GGATG	6 cut(s)	532, 913, 1363, 1446, 2074, 2173
BstFNI	CGCG	2 cut(s)	141, 1080
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	3 cut(s)	146, 298, 557
BstMAI	GTCTC	4 cut(s)	199, 633, 1835, 2131
BstNI	CCWGG	6 cut(s)	116, 129, 185, 191, 1355, 2174
BstNSI	RCATGY	2 cut(s)	769, 1492
BstSCI	CCNGG	7 cut(s)	114, 127, 183, 189, 277, 1353, 2172
BstSFI	CTRYAG	1 cut(s)	2178
BstUI	CGCG	2 cut(s)	141, 1080
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	3 cut(s)	1004, 1156, 1476
BstYI	RGATCY	3 cut(s)	1004, 1156, 1476
BsuI	GTATCC	2 cut(s)	369, 1242
BsuRI	GGCC	7 cut(s)	33, 41, 53, 113, 218, 1384, 1868
BtgI	CCRYGG	1 cut(s)	139
BtgZI	GCGATG	1 cut(s)	1061
BtsCI	GGATG	6 cut(s)	532, 913, 1363, 1446, 2074, 2173
BtsI	GCAGTG	3 cut(s)	291, 915, 1758
BtsIMutI	CAGTG	8 cut(s)	107, 219, 291, 915, 1160, 1339, 1758, 1857
Cac8I	GCNNGC	4 cut(s)	1125, 1386, 1505, 1938
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	3 cut(s)	146, 298, 557
Cfr10I	RCCGGY	2 cut(s)	170, 298
Cfr13I	GGNCC	7 cut(s)	52, 112, 118, 168, 187, 950, 1383
Cfr42I	CCGCGG	1 cut(s)	142
CseI	GACGC	1 cut(s)	882
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	7 cut(s)	181, 240, 349, 387, 545, 1084, 1456
CspAI	ACCGGT	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	885, 920
CviAII	CATG	7 cut(s)	415, 524, 766, 854, 959, 1489, 1580
CviQI	GTAC	7 cut(s)	181, 240, 349, 387, 545, 1084, 1456
DdeI	CTNAG	8 cut(s)	99, 344, 378, 471, 602, 992, 1371, 2154
DraI	TTTAAA	1 cut(s)	2196
DriI	GACNNNNNGTC	1 cut(s)	1575
EaeI	YGGCCR	3 cut(s)	31, 39, 1866
Eam1104I	CTCTTC	3 cut(s)	1037, 1592, 2117
Eam1105I	GACNNNNNGTC	1 cut(s)	1575
EarI	CTCTTC	3 cut(s)	1037, 1592, 2117
Ecl136II	GAGCTC	3 cut(s)	26, 91, 941
Eco130I	CCWWGG	2 cut(s)	777, 2027
Eco24I	GRGCYC	3 cut(s)	28, 93, 943
Eco31I	GGTCTC	2 cut(s)	199, 1835
Eco32I	GATATC	1 cut(s)	2263
Eco47I	GGWCC	4 cut(s)	118, 168, 187, 950
Eco53kI	GAGCTC	3 cut(s)	26, 91, 941
Eco57I	CTGAAG	4 cut(s)	284, 1722, 1854, 2077
Eco88I	CYCGRG	3 cut(s)	92, 816, 1745
EcoICRI	GAGCTC	3 cut(s)	26, 91, 941
EcoNI	CCTNNNNNAGG	1 cut(s)	1970
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	6 cut(s)	114, 127, 183, 189, 1353, 2172
EcoRV	GATATC	1 cut(s)	2263
EcoT14I	CCWWGG	2 cut(s)	777, 2027
EcoT38I	GRGCYC	3 cut(s)	28, 93, 943
ErhI	CCWWGG	2 cut(s)	777, 2027
FaeI	CATG	7 cut(s)	418, 527, 769, 857, 962, 1492, 1583
FalI	AAGNNNNNCTT	2 cut(s)	1542, 1574
FaqI	GGGAC	2 cut(s)	104, 936
FatI	CATG	7 cut(s)	414, 523, 765, 853, 958, 1488, 1579
FauI	CCCGC	2 cut(s)	815, 1393
FokI	GGATG	6 cut(s)	519, 920, 1370, 1453, 2081, 2180
FriOI	GRGCYC	3 cut(s)	28, 93, 943
FspBI	CTAG	4 cut(s)	770, 1101, 1317, 2028
GlaI	GCGC	3 cut(s)	145, 297, 556
GsuI	CTGGAG	4 cut(s)	948, 1363, 2030, 2259
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	7 cut(s)	33, 41, 53, 113, 218, 1384, 1868
HapII	CCGG	4 cut(s)	17, 171, 278, 299
HgaI	GACGC	1 cut(s)	882
HhaI	GCGC	3 cut(s)	146, 298, 557
Hin1I	GRCGYC	1 cut(s)	893
Hin1II	CATG	7 cut(s)	418, 527, 769, 857, 962, 1492, 1583
Hin6I	GCGC	3 cut(s)	144, 296, 555
HinP1I	GCGC	3 cut(s)	144, 296, 555
HincII	GTYRAC	3 cut(s)	160, 1650, 1756
HindII	GTYRAC	3 cut(s)	160, 1650, 1756
HinfI	GANTC	6 cut(s)	80, 340, 658, 773, 1349, 1658
HpaII	CCGG	4 cut(s)	17, 171, 278, 299
HphI	GGTGA	5 cut(s)	572, 1456, 1733, 1850, 2032
Hpy166II	GTNNAC	7 cut(s)	160, 545, 913, 1084, 1650, 1756, 1877
Hpy188I	TCNGA	8 cut(s)	79, 88, 199, 605, 751, 1204, 1466, 2167
Hpy8I	GTNNAC	7 cut(s)	160, 545, 913, 1084, 1650, 1756, 1877
Hpy99I	CGWCG	2 cut(s)	158, 1573
HpyAV	CCTTC	7 cut(s)	441, 661, 965, 1146, 1699, 1829, 2194
HpyCH4III	ACNGT	5 cut(s)	154, 211, 1528, 1615, 1893
HpyCH4V	TGCA	7 cut(s)	530, 653, 683, 1196, 1310, 1896, 2180
HpyF3I	CTNAG	8 cut(s)	99, 344, 378, 471, 602, 992, 1371, 2154
Hsp92I	GRCGYC	1 cut(s)	893
Hsp92II	CATG	7 cut(s)	418, 527, 769, 857, 962, 1492, 1583
HspAI	GCGC	3 cut(s)	144, 296, 555
KpnI	GGTACC	1 cut(s)	184
KspI	CCGCGG	1 cut(s)	142
LguI	GCTCTTC	1 cut(s)	1037
LmnI	GCTCC	6 cut(s)	88, 929, 938, 965, 1815, 1933
LweI	GCATC	6 cut(s)	517, 577, 895, 978, 1084, 1594
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	4 cut(s)	770, 1101, 1317, 2028
MaeIII	GTNAC	3 cut(s)	466, 1328, 1528
MfeI	CAATTG	2 cut(s)	363, 1917
MflI	RGATCY	3 cut(s)	1004, 1156, 1476
MhlI	GDGCHC	5 cut(s)	28, 93, 568, 943, 1988
MlsI	TGGCCA	1 cut(s)	1868
MluNI	TGGCCA	1 cut(s)	1868
MlyI	GAGTC	2 cut(s)	89, 767
MmeI	TCCRAC	5 cut(s)	916, 1129, 1307, 2013, 2046
Mox20I	TGGCCA	1 cut(s)	1868
MscI	TGGCCA	1 cut(s)	1868
MseI	TTAA	8 cut(s)	984, 1218, 1635, 1770, 1961, 2099, 2118, 2195
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	1868
MspA1I	CMGCKG	3 cut(s)	141, 482, 2150
MspCI	CTTAAG	1 cut(s)	983
MspI	CCGG	4 cut(s)	17, 171, 278, 299
MspR9I	CCNGG	7 cut(s)	116, 129, 185, 191, 279, 1355, 2174
MunI	CAATTG	2 cut(s)	363, 1917
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	6 cut(s)	116, 129, 185, 191, 1355, 2174
MvnI	CGCG	2 cut(s)	141, 1080
NciI	CCSGG	1 cut(s)	279
NlaIII	CATG	7 cut(s)	418, 527, 769, 857, 962, 1492, 1583
NlaIV	GGNNCC	8 cut(s)	120, 134, 182, 208, 672, 952, 1158, 1521
NmeAIII	GCCGAG	1 cut(s)	862
NspI	RCATGY	2 cut(s)	769, 1492
PaeR7I	CTCGAG	2 cut(s)	92, 1745
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	1488
PciSI	GCTCTTC	1 cut(s)	1037
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	4 cut(s)	340, 658, 1349, 1658
PflMI	CCANNNNNTGG	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	170
PleI	GAGTC	2 cut(s)	88, 767
PpsI	GAGTC	2 cut(s)	88, 767
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	1488
PsiI	TTATAA	1 cut(s)	795
Psp124BI	GAGCTC	3 cut(s)	28, 93, 943
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	6 cut(s)	114, 127, 183, 189, 1353, 2172
PspGI	CCWGG	6 cut(s)	114, 127, 183, 189, 1353, 2172
PspN4I	GGNNCC	8 cut(s)	120, 134, 182, 208, 672, 952, 1158, 1521
PspPI	GGNCC	7 cut(s)	52, 112, 118, 168, 187, 950, 1383
PspPPI	RGGWCCY	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	92
PsrI	GAACNNNNNNTAC	2 cut(s)	746, 778
PstI	CTGCAG	1 cut(s)	2182
PsuI	RGATCY	3 cut(s)	1004, 1156, 1476
PvuII	CAGCTG	2 cut(s)	482, 2150
RsaI	GTAC	7 cut(s)	182, 241, 350, 388, 546, 1085, 1457
RsaNI	GTAC	7 cut(s)	181, 240, 349, 387, 545, 1084, 1456
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	3 cut(s)	28, 93, 943
SacII	CCGCGG	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	1037
SaqAI	TTAA	8 cut(s)	984, 1218, 1635, 1770, 1961, 2099, 2118, 2195
Sau96I	GGNCC	7 cut(s)	52, 112, 118, 168, 187, 950, 1383
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	2 cut(s)	89, 767
ScrFI	CCNGG	7 cut(s)	116, 129, 185, 191, 279, 1355, 2174
SduI	GDGCHC	5 cut(s)	28, 93, 568, 943, 1988
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	6 cut(s)	517, 577, 895, 978, 1084, 1594
SfcI	CTRYAG	1 cut(s)	2178
Sfr274I	CTCGAG	2 cut(s)	92, 1745
Sfr303I	CCGCGG	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	142
SinI	GGWCC	4 cut(s)	118, 168, 187, 950
SlaI	CTCGAG	2 cut(s)	92, 1745
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	4 cut(s)	92, 983, 1589, 1745
SmoI	CTYRAG	4 cut(s)	92, 983, 1589, 1745
SspMI	CTAG	4 cut(s)	770, 1101, 1317, 2028
SstI	GAGCTC	3 cut(s)	28, 93, 943
StyD4I	CCNGG	7 cut(s)	114, 127, 183, 189, 277, 1353, 2172
StyI	CCWWGG	2 cut(s)	777, 2027
TaaI	ACNGT	5 cut(s)	154, 211, 1528, 1615, 1893
TaqI	TCGA	6 cut(s)	5, 93, 304, 311, 1746, 1777
TatI	WGTACW	3 cut(s)	386, 544, 1083
TauI	GCSGC	6 cut(s)	36, 65, 68, 144, 490, 1417
TfiI	GAWTC	4 cut(s)	340, 658, 1349, 1658
Tru1I	TTAA	8 cut(s)	984, 1218, 1635, 1770, 1961, 2099, 2118, 2195
Tru9I	TTAA	8 cut(s)	984, 1218, 1635, 1770, 1961, 2099, 2118, 2195
TscAI	CASTG	8 cut(s)	107, 226, 298, 922, 1167, 1346, 1765, 1864
TspDTI	ATGAA	7 cut(s)	826, 875, 947, 1018, 1146, 1562, 1691
TspGWI	ACGGA	3 cut(s)	670, 1301, 1453
TspRI	CASTG	8 cut(s)	107, 226, 298, 922, 1167, 1346, 1765, 1864
Van91I	CCANNNNNTGG	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	983
VpaK11BI	GGWCC	4 cut(s)	118, 168, 187, 950
XagI	CCTNNNNNAGG	1 cut(s)	1970
XapI	RAATTY	6 cut(s)	11, 424, 458, 1817, 2215, 2227
XceI	RCATGY	2 cut(s)	769, 1492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1660
XhoI	CTCGAG	2 cut(s)	92, 1745
XmaJI	CCTAGG	1 cut(s)	2027
XspI	CTAG	4 cut(s)	770, 1101, 1317, 2028
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.