Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

33636752 .. 33648598

Gene Structure 11847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGTTTGAAGCCGTCAAAGATTATCACCGGAGCAGGGTTTCAATGGCGGAGTAAGCTTGAGGCTGTGCAGATGCTAAGTGAAACTGGATCTATTGAGAACATTCCAGAGTTCATTGCGGGTGTGAAGAGCAAGAAGCGAAAGATGTCAGGTTTTGGGCATCGCATGTACAAGAACTATGATCCTAGAGCAAAGGTCATAAGAAAGCTAGTAGATGAAGTATTCTCCATTGTTGGAAGGGATCCACTGATTGAGGTTGCTGTTGCTTTGAAGAAAGCTGCACTATCTGATGAGTATTTTGTTAAGAGAAAGTTGTATCCTAATGTTGATTTCTACTCTGGGTTGATATATAGGGCAATTGGATTTCCAACGGAGTTCTTCCCAGTTTTATTTGCAATCCCTAGAATGGCTGGTTACTTGGCACACTGGAGAGAATCCCTGGATGCCCAAGCAGGTTTCATGCAGCTGTTCAAAAGCACAAGTCATGGATCAGTGAATGAAGAAGAAGCTGATAGGATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

174

Amino Acids

19.73

Weight (kDa)

9.57

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	21 - 147	8.4e-46	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	443
AciI	CCGC	2 cut(s)	49, 119
AclWI	GGATC	5 cut(s)	97, 176, 236, 249, 496
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	36, 406
AgsI	TTSAA	4 cut(s)	10, 44, 271, 472
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	5 cut(s)	58, 208, 278, 466, 509
AluI	AGCT	5 cut(s)	58, 208, 278, 466, 509
AlwI	GGATC	5 cut(s)	97, 176, 236, 249, 496
ApeKI	GCWGC	2 cut(s)	278, 463
AsuHPI	GGTGA	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	265, 475
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	327
BfaI	CTAG	3 cut(s)	186, 209, 402
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	2 cut(s)	279, 464
BlsI	GCNGC	2 cut(s)	280, 465
Bme1390I	CCNGG	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	440
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	3 cut(s)	63, 169, 433
BmuI	ACTGGG	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 406
Bse1I	ACTGG	3 cut(s)	91, 383, 431
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	2 cut(s)	36, 406
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	3 cut(s)	91, 383, 431
BseXI	GCAGC	2 cut(s)	265, 475
BsgI	GTGCAG	2 cut(s)	89, 264
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	36, 406
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	89, 181, 241, 488
BspACI	CCGC	2 cut(s)	49, 119
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	5 cut(s)	97, 176, 236, 249, 496
BspQI	GCTCTTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	91, 383, 431
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	4 cut(s)	89, 181, 241, 488
Bst2UI	CCWGG	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	4 cut(s)	92, 184, 244, 491
BstMBI	GATC	4 cut(s)	89, 181, 241, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	265, 475
BstX2I	RGATCY	2 cut(s)	89, 241
BstYI	RGATCY	2 cut(s)	89, 241
BsuI	GTATCC	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	3 cut(s)	245, 424, 498
BveI	ACCTGC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	166, 460, 485
CviJI	RGCY	8 cut(s)	13, 58, 65, 208, 278, 410, 466, 509
CviKI_1	RGCY	8 cut(s)	13, 58, 65, 208, 278, 410, 466, 509
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	4 cut(s)	91, 183, 243, 490
DpnII	GATC	4 cut(s)	89, 181, 241, 488
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	438
FaeI	CATG	3 cut(s)	169, 463, 488
FaiI	YATR	8 cut(s)	167, 180, 200, 349, 351, 461, 486, 523
FatI	CATG	3 cut(s)	165, 459, 484
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	279, 464
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	279, 464
FspBI	CTAG	3 cut(s)	186, 209, 402
GluI	GCNGC	2 cut(s)	279, 464
GsuI	CTGGAG	1 cut(s)	448
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	3 cut(s)	169, 463, 488
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	70, 281, 395, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	169, 463, 488
Kzo9I	GATC	4 cut(s)	89, 181, 241, 488
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	2 cut(s)	265, 475
LweI	GCATC	3 cut(s)	63, 169, 433
MaeI	CTAG	3 cut(s)	186, 209, 402
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	4 cut(s)	91, 183, 243, 490
MboI	GATC	4 cut(s)	89, 181, 241, 488
MboII	GAAGA	5 cut(s)	139, 283, 370, 512, 515
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	89, 241
MluCI	AATT	1 cut(s)	357
MmeI	TCCRAC	2 cut(s)	214, 392
MnlI	CCTC	2 cut(s)	55, 247
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	4 cut(s)	89, 181, 241, 488
NlaIII	CATG	3 cut(s)	169, 463, 488
NlaIV	GGNNCC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	280, 465
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	243
PsuI	RGATCY	2 cut(s)	89, 241
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	2 cut(s)	279, 464
Sau3AI	GATC	4 cut(s)	89, 181, 241, 488
ScrFI	CCNGG	1 cut(s)	440
SetI	ASST	9 cut(s)	60, 154, 198, 210, 258, 280, 457, 468, 511
SfaNI	GCATC	3 cut(s)	63, 169, 433
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	2 cut(s)	49, 119
SspMI	CTAG	3 cut(s)	186, 209, 402
StyD4I	CCNGG	1 cut(s)	438
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	3 cut(s)	252, 431, 498
TseI	GCWGC	2 cut(s)	278, 463
TspDTI	ATGAA	4 cut(s)	103, 231, 448, 513
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	3 cut(s)	252, 431, 498
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	3 cut(s)	186, 209, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.