Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8192116.1

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 452

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8192116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

atgaattgctcaacggctgctgctcggcatctggcgtctagtggtgtggatgtttacactgccctttccggagctgttggagctctttatggtccccttcatggtggagcaaatgaggctgtgcttaagatgctaagtgaaattggatctgttgagaacattccagagttcatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

58

Amino Acids

5.86

Weight (kDa)

4.92

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	68
AclWI	GGATC	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflII	CTTAAG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	74, 83
AluI	AGCT	2 cut(s)	74, 83
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	154
Aor13HI	TCCGGA	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	17, 20
AspS9I	GGNCC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	4, 7
BceAI	ACGGC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	18, 21
BlsI	GCNGC	2 cut(s)	19, 22
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	37, 120
BsaHI	GRCGYC	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	68
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	4, 7
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	146
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	125
BssMI	GATC	1 cut(s)	146
BssNI	GRCGYC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 116, 130
BstV1I	GCAGC	2 cut(s)	4, 7
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	92
CseI	GACGC	1 cut(s)	24
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	4 cut(s)	17, 74, 83, 119
CviKI_1	RGCY	4 cut(s)	17, 74, 83, 119
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	1 cut(s)	104
FaiI	YATR	2 cut(s)	90, 102
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	18, 21
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	18, 21
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	18, 21
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	104
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	69, 164
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 116, 130
HpyF3I	CTNAG	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	71, 80, 107
LpnPI	CCDG	2 cut(s)	17, 82
Lsp1109I	GCAGC	2 cut(s)	4, 7
LweI	GCATC	2 cut(s)	37, 120
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	2 cut(s)	4, 141
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	1 cut(s)	109
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	80, 116, 130
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	19, 22
Psp124BI	GAGCTC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	18, 21
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	2 cut(s)	76, 85
SfaNI	GCATC	2 cut(s)	37, 120
SgeI	CNNG	5 cut(s)	36, 44, 51, 81, 113
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	4, 141
SspMI	CTAG	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	85
TasI	AATT	2 cut(s)	4, 141
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	17, 20
TspDTI	ATGAA	3 cut(s)	17, 89, 160
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	92
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.