Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

8846704 .. 8849736

Gene Structure 3033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAGAGTTAAGCGTTTCTTCTCAGTCCTCCTTTCTCCTCCTCCGACCCAAAACCGGAATTCTCCACAACCCCCGAACCGCCATTTCTCTTTCTCTAAGCGGCGCCGGAGCTCCGCGCCTGCGATTCGCGGCTTCCTCCGGTCAAGCTCGTAGCTTGAGGCTCGGGGTGGTCTCCGATCCTACAGCTCCCAGCTTATTCACCGTTGATTCTGGCACTAAGGGTATTGTGATCGAGCCCGAGATCGGCGGCGGCGGCGGAAACGGAGGCGATTCTGGCGGGAGAGGCGGCGGAGGAGGAGGAGGGGATAATAGTGACGATAGAAGCGAGGAGGGAGCTGACGATAGTAGCAAGAAGAAGGGGATGTCGATGTCTCAGAAACTAACCCTAGCTTATGCTCTGCTTATTGGAGTGGGTGGCGTTATGGGCTTTTTGAAGAGCGGCAGCAACAAGTCACTGTTGGCAGGAGGAATATCAGCATCCTTACTCTATCTTGTTTATACTGAGCTTCCTAAAAGAACAGTTTTTGCATCATCTCTTGGGCTTGGGCTGTCTGCTGCCCTTCTGGTTGTGATGGGCTCTCGTTTCAAGAGGTCAGGGAAGATATTTCCAGCCGGCGTTGTATCTCTCGTGTCACTCATAATGACTGGTGGCTACTTTCATGGAATTCTACGTGGCATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

228

Amino Acids

23.02

Weight (kDa)

10.04

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	129 - 219	2e-19	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	441
AccII	CGCG	2 cut(s)	118, 131
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	60, 666
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	56, 245
AgsI	TTSAA	2 cut(s)	436, 589
AluBI	AGCT	8 cut(s)	113, 149, 156, 188, 195, 338, 392, 508
AluI	AGCT	8 cut(s)	113, 149, 156, 188, 195, 338, 392, 508
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	178, 378
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	164, 239
ApeKI	GCWGC	2 cut(s)	444, 557
ApoI	RAATTY	2 cut(s)	60, 666
AspLEI	GCGC	2 cut(s)	107, 120
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	2 cut(s)	164, 239
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	3 cut(s)	115, 240, 581
BauI	CACGAG	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	456, 544
BccI	CCATC	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	178, 378
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	9 cut(s)	103, 132, 250, 253, 256, 289, 442, 445, 558
BlsI	GCNGC	9 cut(s)	104, 133, 251, 254, 257, 290, 443, 446, 559
BmeT110I	CYCGRG	2 cut(s)	164, 239
BmiI	GGNNCC	1 cut(s)	106
BmsI	GCATC	2 cut(s)	488, 539
BpuEI	CTTGAG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	178
BsaWI	WCCGGW	2 cut(s)	56, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 245
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	652
BseGI	GGATG	2 cut(s)	369, 479
BseLI	CCNNNNNNNGG	2 cut(s)	56, 245
BseMII	CTCAG	3 cut(s)	38, 389, 495
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	6 cut(s)	29, 32, 309, 312, 315, 344
BseXI	GCAGC	2 cut(s)	456, 544
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	118, 131
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	115
BsiHKCI	CYCGRG	2 cut(s)	164, 239
BsiSI	CCGG	4 cut(s)	57, 108, 141, 615
BslI	CCNNNNNNNGG	2 cut(s)	56, 245
BsmAI	GTCTC	2 cut(s)	178, 378
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	2 cut(s)	164, 239
Bsp1286I	GDGCHC	3 cut(s)	115, 240, 581
Bsp143I	GATC	3 cut(s)	178, 231, 243
BspCNI	CTCAG	3 cut(s)	37, 388, 496
BspFNI	CGCG	2 cut(s)	118, 131
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	614
BssMI	GATC	3 cut(s)	178, 231, 243
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	629
Bst2BI	CACGAG	1 cut(s)	629
Bst4CI	ACNGT	3 cut(s)	205, 459, 523
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	122, 616, 680
BstDEI	CTNAG	5 cut(s)	24, 98, 219, 375, 504
BstF5I	GGATG	2 cut(s)	369, 479
BstFNI	CGCG	2 cut(s)	118, 131
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	107, 120
BstKTI	GATC	3 cut(s)	181, 234, 246
BstMAI	GTCTC	2 cut(s)	178, 378
BstMBI	GATC	3 cut(s)	178, 231, 243
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 276, 285, 426
BstNSI	RCATGY	1 cut(s)	682
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	2 cut(s)	118, 131
BstV1I	GCAGC	2 cut(s)	456, 544
BtsCI	GGATG	2 cut(s)	369, 479
BtsIMutI	CAGTG	2 cut(s)	455, 682
Cac8I	GCNNGC	3 cut(s)	122, 616, 680
CfoI	GCGC	2 cut(s)	107, 120
Cfr10I	RCCGGY	1 cut(s)	614
CviAII	CATG	2 cut(s)	662, 679
DdeI	CTNAG	5 cut(s)	24, 98, 219, 375, 504
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	3 cut(s)	180, 233, 245
DpnII	GATC	3 cut(s)	178, 231, 243
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	2 cut(s)	273, 306
Ecl136II	GAGCTC	1 cut(s)	113
Eco24I	GRGCYC	3 cut(s)	115, 240, 581
Eco31I	GGTCTC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	113
Eco88I	CYCGRG	2 cut(s)	164, 239
EcoICRI	GAGCTC	1 cut(s)	113
EcoRI	GAATTC	2 cut(s)	60, 666
EcoT38I	GRGCYC	3 cut(s)	115, 240, 581
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaeI	CATG	2 cut(s)	665, 682
FaiI	YATR	6 cut(s)	396, 425, 501, 641, 663, 680
FalI	AAGNNNNNCTT	1 cut(s)	36
FatI	CATG	2 cut(s)	661, 678
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	9 cut(s)	103, 132, 250, 253, 256, 289, 442, 445, 558
FokI	GGATG	2 cut(s)	376, 466
FriOI	GRGCYC	3 cut(s)	115, 240, 581
Fsp4HI	GCNGC	9 cut(s)	103, 132, 250, 253, 256, 289, 442, 445, 558
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	106, 119
GluI	GCNGC	9 cut(s)	103, 132, 250, 253, 256, 289, 442, 445, 558
GsaI	CCCAGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	4 cut(s)	57, 108, 141, 615
HhaI	GCGC	2 cut(s)	107, 120
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	665, 682
Hin6I	GCGC	2 cut(s)	105, 118
HinP1I	GCGC	2 cut(s)	105, 118
HinfI	GANTC	3 cut(s)	126, 209, 272
HpaII	CCGG	4 cut(s)	57, 108, 141, 615
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	47, 178, 378
Hpy188III	TCNNGA	1 cut(s)	589
HpyAV	CCTTC	2 cut(s)	352, 572
HpyCH4III	ACNGT	3 cut(s)	205, 459, 523
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	2 cut(s)	530, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 276, 285, 426
HpyF3I	CTNAG	5 cut(s)	24, 98, 219, 375, 504
HpySE526I	ACGT	1 cut(s)	673
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	665, 682
HspAI	GCGC	2 cut(s)	105, 118
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	1 cut(s)	614
KroNI	GCCGGC	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	178, 231, 243
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	4 cut(s)	110, 118, 193, 335
Lsp1109I	GCAGC	2 cut(s)	456, 544
LweI	GCATC	2 cut(s)	488, 539
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	3 cut(s)	314, 453, 633
MalI	GATC	3 cut(s)	180, 233, 245
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	3 cut(s)	178, 231, 243
MboII	GAAGA	4 cut(s)	12, 367, 448, 613
MhlI	GDGCHC	3 cut(s)	115, 240, 581
MluCI	AATT	2 cut(s)	60, 666
Mly113I	GGCGCC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	614
MseI	TTAA	1 cut(s)	11
MspI	CCGG	4 cut(s)	57, 108, 141, 615
MvnI	CGCG	2 cut(s)	118, 131
MwoI	GCNNNNNNNGC	4 cut(s)	255, 276, 285, 426
NaeI	GCCGGC	1 cut(s)	616
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	3 cut(s)	178, 231, 243
NgoMIV	GCCGGC	1 cut(s)	614
NlaIII	CATG	2 cut(s)	665, 682
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	3 cut(s)	314, 453, 633
NspI	RCATGY	1 cut(s)	682
PaeI	GCATGC	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdiI	GCCGGC	1 cut(s)	616
PfeI	GAWTC	3 cut(s)	126, 209, 272
PkrI	GCNGC	9 cut(s)	104, 133, 251, 254, 257, 290, 443, 446, 559
PluTI	GGCGCC	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	674
Psp124BI	GAGCTC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	9 cut(s)	103, 132, 250, 253, 256, 289, 442, 445, 558
Sau3AI	GATC	3 cut(s)	178, 231, 243
SduI	GDGCHC	3 cut(s)	115, 240, 581
SfaNI	GCATC	2 cut(s)	488, 539
SfcI	CTRYAG	1 cut(s)	183
SfoI	GGCGCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SphI	GCATGC	1 cut(s)	682
Sse9I	AATT	2 cut(s)	60, 666
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	205, 459, 523
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	2 cut(s)	234, 368
TasI	AATT	2 cut(s)	60, 666
TauI	GCSGC	7 cut(s)	105, 134, 252, 255, 258, 291, 444
TfiI	GAWTC	3 cut(s)	126, 209, 272
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	3 cut(s)	314, 453, 633
TseI	GCWGC	2 cut(s)	444, 557
Tsp45I	GTSAC	3 cut(s)	314, 453, 633
TspDTI	ATGAA	1 cut(s)	650
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	462
XapI	RAATTY	2 cut(s)	60, 666
XceI	RCATGY	1 cut(s)	682
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.