Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

18784416 .. 18786226

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGATGCTTGCACTGCCCTGGCCGGTGGTTGGAGCTCTATCTGGTCCCCTTCATGGCGCAGCAAATTAGTTTCCTATTTGCTGAGGAAGCAAAAGATGTTAGGTTTTGGGCAGCGCGTTTACAAGAACTATGATCCTAAAGAAAAGATCATAAGAAAGCTGGTAGATAAACTCCGTCATATGACTCCTGGTCACATCGCTCTGGTGGCCTTTGGCGTCTACTTGGTCATCTCTCCTCTCCTTTCCTCACTGAACCAATTGCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

90

Amino Acids

10.18

Weight (kDa)

10.29

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	25 - 60	2.4e-07	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	117
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	30, 54
AhdI	GACNNNNNGTC	1 cut(s)	189
AjnI	CCWGG	2 cut(s)	18, 187
AluBI	AGCT	2 cut(s)	36, 160
AluI	AGCT	2 cut(s)	36, 160
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	21, 207
ApeKI	GCWGC	2 cut(s)	60, 112
AspLEI	GCGC	2 cut(s)	60, 117
AspS9I	GGNCC	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	72, 124
BciT130I	CCWGG	2 cut(s)	20, 189
BisI	GCNGC	2 cut(s)	61, 113
BlsI	GCNGC	2 cut(s)	62, 114
Bme1390I	CCNGG	2 cut(s)	20, 189
Bme18I	GGWCC	1 cut(s)	45
BmeRI	GACNNNNNGTC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	20, 189
Bpu10I	CCTNAGC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 54
Bse118I	RCCGGY	1 cut(s)	23
BseBI	CCWGG	2 cut(s)	20, 189
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	30, 54
BseMII	CTCAG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	72, 124
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	23, 209
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	30, 54
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	23, 209
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	133, 147
BspANI	GGCC	2 cut(s)	23, 209
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	133, 147
BssNI	GRCGYC	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	20, 189
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	60, 117
BstKTI	GATC	2 cut(s)	136, 150
BstMBI	GATC	2 cut(s)	133, 147
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 88, 206
BstNI	CCWGG	2 cut(s)	20, 189
BstSCI	CCNGG	2 cut(s)	18, 187
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	72, 124
BsuRI	GGCC	2 cut(s)	23, 209
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 248
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	2 cut(s)	60, 117
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	205
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	4 cut(s)	23, 36, 160, 209
CviKI_1	RGCY	4 cut(s)	23, 36, 160, 209
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	135, 149
DpnII	GATC	2 cut(s)	133, 147
DriI	GACNNNNNGTC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	18, 187
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	57
FaiI	YATR	5 cut(s)	55, 132, 152, 180, 182
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	61, 113
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	61, 113
GlaI	GCGC	2 cut(s)	59, 116
GluI	GCNGC	2 cut(s)	61, 113
HaeIII	GGCC	2 cut(s)	23, 209
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	2 cut(s)	60, 117
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	57
Hin6I	GCGC	2 cut(s)	58, 115
HinP1I	GCGC	2 cut(s)	58, 115
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	2 cut(s)	121, 220
Hpy8I	GTNNAC	2 cut(s)	121, 220
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	12, 262
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 88, 206
HpyF3I	CTNAG	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	57
HspAI	GCGC	2 cut(s)	58, 115
Kzo9I	GATC	2 cut(s)	133, 147
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	8 cut(s)	5, 28, 32, 37, 146, 174, 188, 201
Lsp1109I	GCAGC	2 cut(s)	72, 124
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	135, 149
MboI	GATC	2 cut(s)	133, 147
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	65, 257
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	11
MnlI	CCTC	4 cut(s)	78, 246, 256, 258
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	20, 189
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	2 cut(s)	20, 189
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	14, 88, 206
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	2 cut(s)	133, 147
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	62, 114
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	18, 187
PspGI	CCWGG	2 cut(s)	18, 187
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	2 cut(s)	61, 113
Sau3AI	GATC	2 cut(s)	133, 147
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	20, 189
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	4 cut(s)	38, 106, 162, 269
SinI	GGWCC	1 cut(s)	45
Sse9I	AATT	2 cut(s)	65, 257
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	18, 187
TasI	AATT	2 cut(s)	65, 257
TscAI	CASTG	2 cut(s)	19, 255
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	60, 112
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	19, 255
VpaK11BI	GGWCC	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.