Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8164368.1

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 532

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8164368.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 271 bp

gaagcgaaagatgtcaggttttgggcatcgtgtgtacaagaactatgatcctagagcaaatgtcataagaaagctagcagatgaagtattgtccattgttggaagggatccactgattgaggatgctgttgctgtggagaaagctgcactatttgatgagtattttgttaagagaaagctgtatcctaatgttgatttctactttgggttgatatataggtacttgtgcttgtataaagatatgaaagtttgtgggtttttctgtttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

89

Amino Acids

10.51

Weight (kDa)

9.18

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	42, 102, 115
AfaI	GTAC	2 cut(s)	36, 222
AluBI	AGCT	3 cut(s)	74, 144, 179
AluI	AGCT	3 cut(s)	74, 144, 179
AlwI	GGATC	3 cut(s)	42, 102, 115
ApeKI	GCWGC	1 cut(s)	144
AsuNHI	GCTAGC	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	52, 75
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	2 cut(s)	35, 113
BmtI	GCTAGC	1 cut(s)	78
BseGI	GGATG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	47, 107
BspLI	GGNNCC	1 cut(s)	109
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	42, 102, 115
BsrGI	TGTACA	1 cut(s)	34
BssMI	GATC	2 cut(s)	47, 107
BstAUI	TGTACA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	128
BstKTI	GATC	2 cut(s)	50, 110
BstMBI	GATC	2 cut(s)	47, 107
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	35, 221
CviJI	RGCY	3 cut(s)	74, 144, 179
CviKI_1	RGCY	3 cut(s)	74, 144, 179
CviQI	GTAC	2 cut(s)	35, 221
DpnI	GATC	2 cut(s)	49, 109
DpnII	GATC	2 cut(s)	47, 107
FaiI	YATR	6 cut(s)	46, 66, 215, 217, 235, 243
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	52, 75
GluI	GCNGC	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	47, 107
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	35, 113
MaeI	CTAG	2 cut(s)	52, 75
MalI	GATC	2 cut(s)	49, 109
MboI	GATC	2 cut(s)	47, 107
MflI	RGATCY	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	169
NdeII	GATC	2 cut(s)	47, 107
NheI	GCTAGC	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	2 cut(s)	36, 222
RsaNI	GTAC	2 cut(s)	35, 221
SaqAI	TTAA	1 cut(s)	169
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	47, 107
SetI	ASST	5 cut(s)	20, 76, 146, 181, 222
SfaNI	GCATC	2 cut(s)	35, 113
SgeI	CNNG	7 cut(s)	28, 42, 50, 64, 87, 236, 242
SspMI	CTAG	2 cut(s)	52, 75
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	169
Tru9I	TTAA	1 cut(s)	169
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	97, 258
TspRI	CASTG	1 cut(s)	118
XspI	CTAG	2 cut(s)	52, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.